RNA id: XM_021597368.2


Basic Information

Item Value
RNA id XM_021597368.2
length 4711
RNA type mRNA
GC content 0.48
exon number 26
gene id LOC110520209
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54318683 ~ 54365397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGAAATCTTGCCTCCCTCTTTTCTTGGGACTTGTGGAAATTATCTCGTTAGGGTATCGATCGAATaggaaatacagtagaatacttATCGACCATGGAAACATTCGTTTTCATTTGTTTGTAAAGTGAACAATGCACGTGGATTGGTTGTTATTTTAGCCAAGTCTTTCGTGAGTTGCTATTCCTTTAGGACTTTCGGATCTACAAGTGGCCATCGGCGACAGCAGCAGCAAGTGTAGTGTTCACTAGGCCCCCACCATGCTGAGTTTCCTCCGCCGGACGCTGGGCCGGCGGTCCGTCCGTAAGCATGCTGAGAAGGCCCGGCTGAGAGAGGCCCAGCGGGCCACCACACACATCCCTGCTGCCGGGGAGGCCAAGTCTGTCATCACCTGTCGTGTGTCACTGCTGGACGGCACTGATGTCAGTGTGGACCTACCGAAAAAAGCCAAAGGTGAGGAGCTGTTTGACCAGATCATGTATCACCTGGACATCGTAGAGAAGGACTACTTCGGACTACGCTTCATGGACTCTGCACAAGTACCGCATTGGCTTGACGTTACAAAAAGCATTAAAAAACAAGTCAAAATCGGACCCCCATACTGCCTTCACATGAGGGTCAAATTCTACTCCTCAGAACCCAACAACCTGCATGAGGAGTTGACCAGATATCTATTTGTATTGCAACTAAAACAAGATATCCTGAGTGGCAAGTTAGAATGTCCTTTCGACACAGCAGTGGAGCTGGCGGCCTTCTCTTTGCAAGCTGAGCTGGGAGACTGTGACCCTGGGGAGCATGCCCTGGATCTGGTGTCGGAGTTCCGCTTCATGCCAGAACAGACTGAGGCCATGGAGCTGGCAATCTTCAACACCTGGAAGGAGTGCAGGGGCCAGATGCCATCGCAGGCGGAGATTAACTATCTGAACAAGGCCAAGTGGCTGGAGATGTATGGGGTGGACATGCACATGGTCAAGGCTCGAGATGGAAATGACTACCAGCTAGGACTGACCCCAACTGGAGTCCTGGTGTTTGAGGGAGAGACCAAGATAGGCCTGTTCTTCTGGCCCAAGATCACCCGTCTAGACTTTAAGAAGAGCACGCTGAccctggtggtggtggaggatgaTGGAGAAGAGGCTCAGGAGACCGAGGAGGGTAAAGAGCAGGAGCACACGTTTGTGTTCCGTATGGACCACCCCAAGGCCTGTAAGCACCTGTGGAAGTGTGCTGTGGAACACCATGCTTTCTTCCGGCTCCGCGGCCCGGTCCAGAAGGGATCAGCACGCTCTGGGTTCATACGCATGGGATCACGCTTCCGCTACAGTGGGAAGACTGAGTACCAGACCACCAAGGGCAACAAAGCCAGGAGGTCTGCATCGTTTGAGAGGAGGCCCAGCCGACGCTACTCCAGGAGGACCATGATGAACCGGGGAGCCAACAAGCCCCAAGAtcacaacaatggagtGAACCCCAACAAAGACACTAAGCCACTCCACATCAGAAGCCCCTGGTCTCTTCCTGTGGTCAGCCCTGCTCCCTCAGTCTCCACCAGCAGCCCCATGGAAATCGAAACCCTCCCCAGGAGTCCTGGCGGTGGCCAATCAGAGAAGAGCATGCCACTGCCCCTCGTAGCTGATCTGCTGGAGACGTGCGTCAATGATGTCATCCGGGCGCCTGTTCCCATGGCGACAGCAGGCCTGCCTGAGGAGGCGGGGCCAAGCATGGCAGCCTCCGCCTCCAGCCTCACGGCAGACGACACAGTCTCTCTTGCTGAGGCAGCAGCGCGGCTGAAGCAGCTGGAACTGGACAGTGCCCCACTCCCTGTCCCTTCCAGAGCTAACGTCAATCTCAACATGAACAACCAGgaggACGTGGTGAAGCTCACAGAGAAGTGTCTGAACAGTGTAGGCAGCAGCCCTGTGCTCGCTCCACTGCGCCCCCCAGAGGACCTGAAGAGCAACATCCTTAAAGCTCAGGCAGAGGCTGCTCTCAAGGGATCACTGGAGGAGCATGTTGTGATCGGGGACAAGAACACCAACCTACAGGAAGCATCAGCCAGGCTGAAGGTGCGTAGTGGGCGTATGGGCAGCAACTCGTCCCTGTCTCTCACTggacgtcctgagagacatgaGTCATGGGACCTGCTCAAACCCACGCTGCTGACCAATGCTGGGCCCAGTGTTGAGATGGTGGCTGCGGATCTCATGCCGTCAGCAACCATGATGGCTGCTGAAATACTTAACGAAGGACTGCCGTCAAAGGCCAAACCAGAGGAGCTGGAGATGCCCACCCTGCCGCCGCTGCCAGTCCCGCTGAGTGATAACCTGATAGATTTCTCAGATCCAACCCCAGTATTACCACCAGCACCAGTGCAGTCTAAGTCCATGATATCACCTCGCTGGATCGTCCCTGCTGCACCGCCCACTGCCATCTTTACTAACGGCCTCCTTGACCCCTCTGCCAAGACCGCCGCCCCTCTCCAACCTGAAGGGGGGGCTATTGCCCCAACCCTGCACCCCCATCTGTTCTCTCAAACTCACAATGTGATTGCCACAAGCATTGCTGCCCAGGTACCCAAGAAGGACGGCACAAAGCCCAAAGGTCTGTTGACCACTGAGCTCTGAGAGGGAATCGGGGGCTAGCTTCTGCCCTTCTCATAACAATTATGTCCTATTCCTGGCATTCCCAAACTAGTGGGCTACTTACCACCCTTAACACAAGATTCATATTTTACTGCATTTCCAAAACTGGGGAAAGTTCCTGCCCTAGTTACAACCAGCAACTCCTATGGCATTCCCAAACAATTCCCAAACCAGCTGCAATCATGAAATTGgattattggaattctttcttacAACAGTCCAGTTTGGAGaagtatttattattttattcctTTTTTTTCTATTTTAGTACTTTAGTTGTGTCACTGGTCCTCTCATAAGCATTCCTAATTACCTACACAGTGCGCACACCGTTCTTTTAGATATGTTTATAGCTGGAAGGGACTGCAATAAATGCTGAGAGCTAAGGAAGAAGACAAAGCAAAGATGACCATGTCTGACTGGACTCTTTGAGACCATTTTTTGACACCCTTTGGCATTGGGTACATTCCTGTGTTCAGCACACCACCTCCACACAGCCCATTCAGGGAGATGATCTGTCAACCTGAGGCTGCCTACCTGGATGAAGAACCACTGTATCAAAGAACCTCAAAGAGCCTCATCACTGTACCTCAAACCGCTGAATTAAATTGGAGCACTAGACCTGGACTCTTGATAGGATGGGCAATGACTTTCTACTGacattttactttttatttttattttattttgtcctgttttTTCCCCTTTTGCTTTTTTTAAAGTGAGTTGTATTGATCAAGCGCCAGCGTTTAGTGTTCAGTTAGGACCTGGCTTTCACTAGAATGTTCTGATCCAGATTATGACTCGATCATCTGAGGATGACAACGGCAATCTGTAGCATGCAGGTATGAATTGAACCACGAACAATTCATACCTAAAACGTTATACCTTTTCTATCTCCATATAAAAACACTAGCTACGACCTGCCTTACTTAGCTAGCTCAATGTGAAATTCTGATTGTAATTTTATACAACAAGGAACTACTAATACTTCTATTATTACTCCTGTGTCTAGGCCTATACTTACTGtactttttattttttgtgttactatatactgtatgtgatggtAATTTCTCATCATGTCGTCTTGACACTGTTTCTGGCTGTGGTCATCAATGACTCTCAGGCTTGACACGGGAAATAGGCCTAACACATACTGGCACCCCATTGGTTCTTCTCCAGACTAACCCAATCACATCTAGGATCTCTGGTGGTACGAATGAGTCGgtcaactgtattattgactcaCATAAATGTATTTCAGGACTTTTTATATGTTGCCTCTGCGGACGGTAGATCAGAAGTAGATATTTTGCGAGGCTGTGTGCAGTAGAGGTAAAAGCAGAAGGAATTATTTTAAATACTGCTAATTTGAATAAGTAAACTGTGAGCTATTAACACCCATCTCAACAGAAAAGTCTTAAAATcacatttatttcattttttgtgAAGTTTCAGAATAATTGATGCTTTCTTGATTTATGTTTTCGCTGGACGACTTAAAAGAACGGCCAAGCTTTGTAGTactatctctctttctcaactGGCTGTATCATGAGTTATCTAAACTGATTTGCCTGGCAAGAACAATTCTGTGTCATATAAATGATTTATGTCTGCATCAGAAATTGTAGAGAGAGTGATTGACCAACATGAGTGCTCTGTGTACCTACCTAATAACTTTTCGTTTTGCCTCTGTATCTGAGATGAGACTTCTCTTGGTTAGAAATTATACTTCACCATGTAAGTGCAATTTCGCTGTAGCTCTTCTACGTTAATTTATTCCTCTTTTTGTAAGAGCACCCTTATTCACGCTGTATTTAAGTTGTTTGTAGATGTAAAAAATTGCTCTAGGTATTGTCACCACACCAATTTGTATCATGTACATTGATCATCATTACTTTTGAAGGATATGTAGACTATTAAGCCAGTAGCAATTTTGTACAATGTAGTAAATTCTTCAAGTAAAAAGTattcaaagaaaaaacaagtgTGAGTTCTTCCAATGAATATATCTGGGCCTTGTCTCTACTacgacaaataaataaaaaacgtgAAGCCTATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310883 lncRNA upstream 864 54251703 ~ 54317819 (+) True LOC110520208
TU310882 lncRNA upstream 93536 54212480 ~ 54225147 (+) False LOC110520208
TU310846 lncRNA upstream 143876 54174571 ~ 54174807 (+) True G273801
TU310225 lncRNA upstream 169743 54148122 ~ 54148940 (+) True LOC110520205
TU310226 lncRNA upstream 171323 54146748 ~ 54147360 (+) False LOC110520205
TU311064 lncRNA downstream 138717 54504114 ~ 54505805 (+) True G273989
TU311162 lncRNA downstream 253457 54618854 ~ 54653554 (+) True G274076
TU311136 lncRNA downstream 255136 54620533 ~ 54622052 (+) False G274056
TU311140 lncRNA downstream 256285 54621682 ~ 54656329 (+) False G274056
TU311134 lncRNA downstream 277872 54643269 ~ 54656329 (+) False G274056
XM_036974588.1 mRNA upstream 854 54208875 ~ 54317829 (+) False LOC110520208
XM_021597373.2 mRNA downstream 532 54365929 ~ 54437361 (+) True LOC110520210
XM_021597380.2 mRNA downstream 303453 54668850 ~ 54672399 (+) True LOC110520220
XM_036974611.1 mRNA downstream 307835 54673232 ~ 54677914 (+) False LOC110520222
XM_036974610.1 mRNA downstream 307836 54673233 ~ 54689498 (+) False LOC110520222
XM_021597383.2 mRNA downstream 314651 54680048 ~ 54689498 (+) False LOC110520222
TU310076 other upstream 477066 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 660000 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 666252 53648825 ~ 53652431 (+) False G272965
TU309923 other upstream 666531 53648825 ~ 53652152 (+) True G272965
TU309244 other upstream 982157 53291330 ~ 53336526 (+) False LOC110520190
TU311754 other downstream 509002 54874399 ~ 54875115 (+) False G274592
TU312073 other downstream 1009149 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 1009149 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 1534797 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 1549932 55915329 ~ 55916133 (+) False G275553

Expression Profile