RNA id: XM_021597375.2


Basic Information

Item Value
RNA id XM_021597375.2
length 1334
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110520214
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54639230 ~ 54646342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATATGGCTATTTGGACAATCTGGGCACACTTCCGGTAAAACTGTGAGAGGGACCTGGCAACTTTGCTTACGTGGAATTTTCAGCTGAGAGAGAAACACATATGGCTTTACAAGCTCCATTGCATTTTGGAAGATCCTAGTGAAGGAGCAGatcagtctctgtgtctgtgtctctgtgtctctgctgaGTCACTGCAAGCTGGAAGGAGCACTAGGCTAGCTGCGCAGACGACAGCAGAGCACCATGACCTACCGGCTGTTTGAGGAGAAACACCATGCCTCCATCTACCAGAGGTACCGCTTTGTACCCCCAGAGGAGATCAGAGACATCATCCTGCATTACCTGGAAAGGAAGAAAGTCCAGCCTCATGCCCTAGCTGTGGACCTGGGATGTGGGACGGGGCAGAACTCACGCCTGATGGCCCCACACTTCCAGGAAGTGGTGGGCATCGACATCAGCGAGTGCCAACTGGAGGAGGCCAGGGCAGTGGCAGGGTTCAACAACATCACCTACAGGAAAGGGACAGCTGAAGAGCTGCCGTTTCCGGATGCTTCTGTGGACCTACTGACTGCAGCCTCAGCGGCCCATTGGTTTGACCAGCAGCGGTTCCTCTTGGAGGCAGGTCGGGTCCTGAAGCCTTGCGGCTGCATGGCTCTGCTTGGCTTTGCTGATAACTTCAGACTCCATTACGGCTCATGTGGGGACAGACTCACTGACATCTGTGATGAGTTCAAGAAGGTGCTGTTACCATACACCAGCACACAGGTAGCAGTGGCCAACACCAAACTACAGGAGCTTTACACTGCTATCCCCTTCCCTGACAAAGAGAGGATTGAGTGTATCCCACTGAAGCAGCAGATCTCAGTGAGGAACATAGTGGGCTTCATGGAGTCCTTCTCCATGTACCAGGCCTTCCAGAGGGCCGAGCCTGATGCTGCCAACGCACTGCTGCAGAGAACACTCGACAGGTTTCTGAAGGAGATGGGAGTCACATCACCAGACACACTCATGGAAGTGACGCTGGAGTATTTCTGTGTTCTGGCGTCTAAACCGGAGTGAACACTCTTTACagtgtgaatgtgtttgtgtgtagacaGATGTGTTTTAAGCTTGTGTTTAGGCTTGTGTCAATCATGTTCAAGCTGATACTAGAAATGTTATTCTGTTCACATAAGATGTCATTGAAGTCCCTTTGGTTTTGTCTCTTCTTTTATATGTTGTAATGTAGAGCAAACTATTCACCTTAGTCACATCATTACCAAAATGCTTGCCACCTTCAGTATCTTCCTTGCCTGAGATTGACAATAAAATGTCTGCAGACACAATTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311571 lncRNA downstream 31858 54607167 ~ 54607372 (-) True G274412
TU311333 lncRNA downstream 321444 54315329 ~ 54317786 (-) True G274208
TU311321 lncRNA downstream 349959 54281582 ~ 54289271 (-) True G274198
TU311243 lncRNA downstream 410053 54174850 ~ 54229177 (-) True G274126
TU311488 lncRNA upstream 23020 54669362 ~ 54678112 (-) True G274339
TU311690 lncRNA upstream 162477 54808819 ~ 54809081 (-) True G274531
TU311695 lncRNA upstream 167960 54814302 ~ 54814543 (-) True G274536
TU311697 lncRNA upstream 172926 54819268 ~ 54819476 (-) True G274538
TU311711 lncRNA upstream 184263 54830605 ~ 54831374 (-) True G274552
XR_002472959.2 mRNA downstream 2752 54633738 ~ 54636478 (-) True LOC110520218
XM_021597379.2 mRNA downstream 14686 54617528 ~ 54624544 (-) True LOC110520216
XM_036974604.1 mRNA downstream 45150 54504064 ~ 54594080 (-) True LOC110520213
XR_002472958.2 mRNA downstream 210016 54425558 ~ 54429214 (-) True LOC110520212
XM_021597360.2 mRNA downstream 447401 54181672 ~ 54191829 (-) False LOC110520207
XM_021597378.2 mRNA upstream 281 54646623 ~ 54659681 (-) False LOC110520215
XM_036974605.1 mRNA upstream 281 54646623 ~ 54659681 (-) True LOC110520215
XM_021597393.2 mRNA upstream 401176 55047518 ~ 55050859 (-) True LOC110520226
XR_005049721.1 mRNA upstream 425451 55071793 ~ 55122008 (-) False LOC110520227
XM_036974620.1 mRNA upstream 425509 55071851 ~ 55122008 (-) False LOC110520227
TU309646 other downstream 1388146 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 1930414 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3039000 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 3039332 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 3165091 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 33576 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 457152 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 763801 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 763801 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2624440 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile