RNA id: XR_005049680.1


Basic Information

Item Value
RNA id XR_005049680.1
length 2495
RNA type mRNA
GC content 0.50
exon number 9
gene id creb1b
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54993444 ~ 55001733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCCCATTTTCGAGATGACTTCGGGCTACTCCGTCAGTTGTTCGGCTTGTTTCGCCCATCATTCGGTCGTTCTCGATGGTGCCGCTGACGATTTGATTTTCGTCCCTCTcgttctctgtgttgttgttctcGGTGACGCGACGGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGCCTGAATAAAAGTGGAGCTCCGAGGGCCCGGGAGTGACCGAGGGAGTCTGTTTCGCTAAGTCGATGACCATGGAGTCGGGAGCAGAGGTTCATCAGGGAGGAGACACGGCAGTGTCAGAGATAGACAGCCAACAGATCTCCCAGGCACAGATAGCCACCCTGGCACAGCAGGATTATGTTTATGCTTTGCAGGTTTCCATGGCAGCAGGTCACGCCACATCCAGCGGTCCTACGGTCACCCTGGTGCAGCTGCCCAATGGCCAGACGGTCCAGGTTCACGGCGTCATCCAGGCCGCTCAGCCCTCTGTCATACAGTCACCACAGGTCCAGACTGTTCAGATCTCCACCCTAGCAGAGAGTGAAGACTCTCAGGAGTCAGTGGACAGTGTGACTGACTCTCAGAAACGCAGAGAGATCCTCTCACGACGCCCCTCATATAGGAAGATCCTGAATGACCTGTCATCAGGTGACACCCCAGGGGTTCCCAGGATCGAGGAAGAGAAATCGGAGGAGGACACAGCGCCCGCAATCACCACGGTTACCATGCCCACATCATGCCCCATCTACCAGACCAGCAGTGGCCAGTACAtcgCCATCACCCAGGGCGGGGCAATCCAGCTGGCCAATAACGGAACAGACGGGATCCAGGGACTGCAGACCCTGACTATGACCAACGCTGCGGCCGCCCAGCAGGGCACCACCATCCTGCAGTACGCTCAGACCTCAGACGGCCAGCAGATCCTGGTGCCAAGCAACCAGGTGGTAGTGCAAGCTGCGTCAGGAGATGTGCAGGCCTACCAGATCCGCACGGCCCCCACTAGCACCATCGCCCCTGGGGTGGTCATGGCCTCCTCCCCTGCCCTGTCTGGCCAGGGGGGCCCAGAGGTAGAAGTTACCCGCAAGAGAGAGGTCAGACTCATGAAGAACAGAGAGGCGGCCCGCGAGTGTCGCAGGAAGAAGAAGGAGTATGTCAAGTGTCTTGAGAACCGCGTGGCCGTGCTGGAAAACCAGAACAAAACCCTCATAGAGGAACTGAAAGCACTTAAAGACCTGTACTGCCATAAATCTGAGTAGCTTCAAAATAACCCATCCTAGCCCAACTGTCACTCCCTATTCAGCGGGCATCAGACTGCCCACTGACCTGTACAGAGACTCTGCCAAGCATTGGCCTACGGGCATGACCCATGACaTCCTCTTGCTTCCACTCCTTCTTCTCCCGCTCACTTGTTATCCACCTTTTCATCTTTCTTTGCCTCTCCCAACTTCTCTCAATATTATCCCACCGCGGAACTGAAAGGATGAGGATTCATTCGTCAGTTGTGGTTCCAGGGATAACGTGGTGAAACATAACACTAACTCTTTTACACTATTCAAGCTTCTTGTTTGGGGTTTGAATACTGGGAAGAGAAGTCACAGACTTCTGACATAGTCATTTTTTATTAACCCAAAGCCTCTTATCTCTTCACTAACAATGGTTAGCCAATCAAACCATAGGGTTAGTGTCTGAATGTCCAATCAGCTCAAGAGGAAGTCAAGACAAGGAAGTCAAGGTAGCCTCCAGAACCCTGGCATTGGAGTCAGTTAAGACATTGTAGATTtccctgggcccggtttcccaaaagcatctgaaggctaagttcatcgttagaacTTTTGTAGGAGCCTCGTTAAATCTCGTTATTAACGTTGCACTTGAAAGCGCTCGTAATCTAACGCATGCTtcagaccactcgtagaacagcAGTGCGTCGTTAGATGCTTTTTTGCCCTCCTTTATGTACAGAAGATCTCCGCTAAACATCACATGGTTTTATCCGTCTCTCTGTGTCCGCCGATAACTTCAGAACAATGTTGACTACAAATGCAAAGGTGCTAATGTCTTTGTAATTGATACAAACAAGCAACGTATAAAAatatgcttcaaatgaaaaccgagatgactgcattaaGATATAAACAGTAGGATGTAGGCCTATTTCAGTCCTATTGAAATACATaccatgttcaatcaattgagttctatgttgctacttgtaggctactgtttgtaatttgtctcaatatatttcatgatgtgtagccTAACGTGCTTAATGATGTGCCAAATCTTTGATTTAGTGGGTAAGCATTAGACTAAGGCGCCTCAATATTTGCATCCATGGGTGGTAATATCCGTAGCCGCGGGAAGtaagggtgctgagggtgctgcatcACCCCCTGATAAATCACAGTAAACCAAATTAGTGCACTAGGCCTTTGAATAAACCAAATTGGTGCACTAGGCCTTTATTACCCCTGTATGAGCGGAGAAAAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311780 lncRNA upstream 90755 54902216 ~ 54902689 (+) True G274608
TU311758 lncRNA upstream 109064 54883798 ~ 54884380 (+) True G274594
TU311755 lncRNA upstream 118329 54874565 ~ 54875115 (+) True G274592
TU311747 lncRNA upstream 121962 54871226 ~ 54871482 (+) True G274588
TU311742 lncRNA upstream 128301 54864597 ~ 54865143 (+) True G274583
TU311842 lncRNA downstream 41766 55043499 ~ 55044679 (+) True LOC110520225
TU311895 lncRNA downstream 115515 55117248 ~ 55117567 (+) True G274714
TU311896 lncRNA downstream 117576 55119309 ~ 55119856 (+) True G274715
TU311901 lncRNA downstream 124468 55126201 ~ 55126515 (+) True G274720
TU311905 lncRNA downstream 133718 55135451 ~ 55146403 (+) True G274723
XM_021597385.2 mRNA upstream 61901 54859520 ~ 54931543 (+) True LOC110520223
XM_036974610.1 mRNA upstream 303946 54673233 ~ 54689498 (+) False LOC110520222
XM_021597383.2 mRNA upstream 303946 54680048 ~ 54689498 (+) False LOC110520222
XM_036974611.1 mRNA upstream 315530 54673232 ~ 54677914 (+) False LOC110520222
XM_021597380.2 mRNA upstream 321045 54668850 ~ 54672399 (+) True LOC110520220
XM_036974616.1 mRNA downstream 19997 55021730 ~ 55044467 (+) False LOC110520225
XM_036974614.1 mRNA downstream 19997 55021730 ~ 55045043 (+) False LOC110520225
XM_036974615.1 mRNA downstream 19997 55021730 ~ 55045043 (+) False LOC110520225
XM_036974617.1 mRNA downstream 19997 55021730 ~ 55045043 (+) False LOC110520225
XM_036974619.1 mRNA downstream 31117 55032850 ~ 55045043 (+) False LOC110520225
TU311754 other upstream 118329 54874399 ~ 54875115 (+) False G274592
TU310076 other upstream 1151827 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 1334761 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 1341013 53648825 ~ 53652431 (+) False G272965
TU312073 other downstream 372813 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 372813 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 898461 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 913596 55915329 ~ 55916133 (+) False G275553
TU312838 other downstream 913779 55915512 ~ 55916133 (+) False G275553

Expression Profile