RNA id: TU312293


Basic Information

Item Value
RNA id TU312293
length 2627
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC110520227
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55068639 ~ 55122013 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatttggtgaGGGGTGTCTATGACTCCCAGTAGTGTGACTGGTCTAAGCTCAAAGGACTGGCGGTGGAGGATGAGAGccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtaggtgtgagagccccagtgtgtgtactgtatgtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtaggtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtaggtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagctccagtgtgtgtactgtatgtgtgagagctccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtaggtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtaggtgtgagagctccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtaggtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtatgtgtgagagccccagtgtgtgtactgtaggtgtgagagccccagtgtgtgtactgtatgtgtgctttTGGATCCCCTTTTTCCATTACTTGAACTCTACTTGGGCAAGAACAtgttttctctgcattgttgccTTTTCCTCTCCTATCTTTCTTCTCCTGCTTTCTGAGGTACTGTGCTTTAATCATACAAAACTTAACAAGACAGATGCTTTAGCTAGAGTCATGTCTTCCTTATGCAGCTGGGCCTTTATATTCAGATTCTGCTTTCCctagaatgtctttgtttatcACTTTCCACATTTCTTCCCGTTTTGTCTCATCTCTCCTGAAAGGGCCTTAGTACTCCTTAAGCTGCTCATCCAAGTTTCAGTTTGTTTATGTATTCATGTATTTGTATGTAAGTATGTATGGTTTACATTTGAAGTTACAAGTCATATCACCTTCTGGAAAAAGGCTTGATAGAAAGCTGGATAACAGCTAACTCTGGTTCAGGCTGTTTGTGTGGCCTGCTAACACTGAGCCAGTGTTACCAAGCAGCACTAATGCCCTGGACAAGAGCAAGATAACAGCTAGCTAAGTGGCAGTGCTTGTTTAAATGCAGCTACATTATCATTTGGTTTTCAGTATTTTAACATTTTGCACTATCAATTATTTTGCTGTTGTAATGTTTGGGGTTGTATGCTATTATGTCCAGTAAATCAATCGCTTGTTTTTTGTGTGAATTATAATGACCTGTTCTGACAAATTCATTCATGTTATTTATTGAGTGTCTTTTCGCCTGCCTTAAAATGAAAGCCAATCCTGTTACAGCGATAATGTAGTTTGTGTGAGACGTGTGGGCTTCCATCTTTAATCATCAAAATGCCTCAGATGCCCATGTAGTATTAAGccatgtgtctgtttttcattGTATAGAAGAGATCCAAAACCGATGGTCACTGTTGCTTGAATAAAGGTGTCTACTCCAATCTGGAAAGCAAAGGAGATAATATCTtaaatttgttttgtttttttttatttggctTCAACAAAGCTCAATGTACTAAGAGCAGAAAGGGAAGGCTTATAAACGGTCTGTTCTTTGAAGTAAAACTCTGCATACTTGTAGTCAAATGTACATAACTGAAGTCTATCAGAGTGCAGGCTCTCATAGACTGTCTTAAAAAGCTTAAATGACTAGGAGTGTTACTGCTTCTCTTAATGTATGTTGAGCTTAAACATCAGGAATTCATTATACTGGAAATGGTGGACAATACAGTCTCTACTGAGGGACTGATGAGGGCAATGAACCTAAGGGAAGTATTCTCCTGGACATGTTTTTCCTGTTCAGATGCACcgccaaatagggatatctttcTTTCCACATACTTTCTCCAACCTTCACACCATGAGCACTTGGTTTCTGGATTAATGAATACACCCTGCTTTTCAATACTGGGTTTTTATTGTGGATTTTACTCTGCCTTcgttacattttgttattttgtgtcacttatttatttgatttatgttGTGCACCAAGCAGCACTTAGGACTTAAGCACTGTTTCAGGTTTCCCTACTGTTCTATCTTTCTGTTTCGATATGTATCACAGCCAACCTCTTACAGAGACTTGTGTTTCAGTACCTGACCCCTCCTTCCTCCTGCTTTTCTTTGTCTTTTTTTACCACTGATGCCAATAAAACAAACAACTTAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312242 lncRNA downstream 66082 55000183 ~ 55002557 (-) True G275020
TU312213 lncRNA downstream 134839 54929696 ~ 54933800 (-) True G274996
TU312173 lncRNA downstream 172306 54895770 ~ 54896333 (-) True G274971
TU312172 lncRNA downstream 173088 54895258 ~ 54895551 (-) True G274970
TU312164 lncRNA downstream 181471 54886901 ~ 54887168 (-) True G274962
TU312392 lncRNA upstream 167675 55239719 ~ 55244575 (-) True G275151
TU312441 lncRNA upstream 240967 55313011 ~ 55313235 (-) True G275196
TU312445 lncRNA upstream 250359 55322403 ~ 55322661 (-) True G275200
TU312446 lncRNA upstream 251367 55323411 ~ 55323622 (-) True G275201
TU312450 lncRNA upstream 256698 55328742 ~ 55328941 (-) True G275205
XM_021597393.2 mRNA downstream 17780 55047518 ~ 55050859 (-) True LOC110520226
XM_021597378.2 mRNA downstream 408958 54646623 ~ 54659681 (-) False LOC110520215
XM_036974605.1 mRNA downstream 408958 54646623 ~ 54659681 (-) True LOC110520215
XM_021597375.2 mRNA downstream 422297 54639230 ~ 54646342 (-) True LOC110520214
XR_002472959.2 mRNA downstream 432161 54633738 ~ 54636478 (-) True LOC110520218
XR_005049715.1 mRNA upstream 1449 55073493 ~ 55122013 (-) False LOC110520227
XM_021597395.2 mRNA upstream 59350 55131394 ~ 55146386 (-) False idh1
XM_036974621.1 mRNA upstream 59913 55131957 ~ 55144962 (-) False idh1
XM_036974622.1 mRNA upstream 59913 55131957 ~ 55145408 (-) False idh1
XM_036974623.1 mRNA upstream 60558 55132602 ~ 55146388 (-) True idh1
TU311493 other downstream 385834 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 1817555 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2359823 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3468409 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 3468741 51597399 ~ 51599898 (-) False il1rl1
TU312299 other upstream 31450 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 338099 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 338099 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2198738 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 2330940 57402984 ~ 57403575 (-) True G277673

Expression Profile