RNA id: XM_021597395.2


Basic Information

Item Value
RNA id XM_021597395.2
length 2607
RNA type mRNA
GC content 0.48
exon number 9
gene id idh1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55131394 ~ 55146388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagaacACCGATTTCTGGCCCAGTTATCCTTCTCGTTTAGCCCTTTGCTCTTTGGTGATAGCCTAGCAACTACATCTTTTGAAATAGGTTTATTTGAAAGCGCATGAATGTCATATGACTCTTTTTTGTTGTCAAAATCTACCGCAGATTATCTAATCTATGAATTTCTAAACAACTTGGTTATGAACAGGTTCTTATGTTGCAATGAGTAGCACAGCACAAACCGACCCTCTATGAACAAACACCTACCCGACACCCGCCCATAAACACGCTCCCACTGCTGTGTGGGTTACTGTATTGGCTGTTTTAGATTATACATCTCCGTTGATTGGTACAGGGAGTGTCTTTCGAGCGGGCGAGTGCACGGTTGCCGACGAGGTTGACGCCTCTGTTGATACTTTTGGAAGTCGGTGTAGAACAAGACGTTCTACTGCTTCATCGAATATTACTTGTTCAGGCAGGAAACAAAGTTCCAGGATGTCTCAGAAGATTAAGGCAGGGTCGGTGGTGGAGATGCAGGGGGATGAGATGACCAGAGTCATCTGGGAGCTCATTAAGGAGAAGCTCATCTTCCCCTACCTGGAGATGGACCTGCACAGCTACGACCTAGGCATGGAGAACCGAGACGCCACGGACGACAAGGTTACCGTTGAGGCGGCGGAAGCGACGCGACGATACAACGTGGGCATTAAGTGTGCCACCATCACGCCGGATGAGAACCGGGTGGAGGAGTTCAAGTTGAAGCAAATGTGGCGTTCGCCCAATGGAACCATCCGTAACATCCTGGGAGGCACCGTGTTCAGGGAGGCCATCATCTGTAAGAACATCCCTCGCCTTGTGCCCGGCTGGGTCAAACCCATCATCATCGGCAGGCATGCCCACGGAGACCAGTACAAGGCCACAGACTTTGTAGTACCAGGGCCTGGGAGATTGGAGATGAAATTCACACCCAAGTCTGGGGAGCCAATGAACTTTGTTGTCCACGACTTTGAAGgttCAGGTGGTGTGGCTCTGGGGATGTACAACACCGACAGCTCCATCAGGGACTTTGCCCACAGCTCCTTCCAGATGGGCCTGGTTAAAGGCTGGCCTCTGTACCTCAGCACCAAGAACACCATCCTCAAGAAGTATGATGGACGCTTCAAAGATATCTTCCAGGAGATCTACGAGAAGGAGTACCGCTCTAAGTTTGAGCAGAAGGGGATCTGGTATGAGCATCGTCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGATGGAGGATTCATCTGGGCCTGCAAGAACTACGACGGAGACGTTCAGTCTGACTCTGTAGCACAAGGCTACGGGTCCCTGGGTATGATGACCAGCGTGCTCATCTGTCCTGACGGTCGTACAGTAGAGTCAGAGGCTGCCCACGGTACAGTGACACGCCACTACAGACAGCACCAACAGGGCAAGGAGACCTCCACCAACCCCATTGCGTCCATCTTTGCGTGGTCGCGGGGGCTGCTGCACCGGGCGAAGCTGGATGACAACGCAAAGCTGCGTGTGTTTGCTGAGGCCCTGGAGGTTGTCTGCATTGAGACCATCGAGGCTGGCTTCATGACCAAGGATCTGGCTATCTGTGTCAAAGGAATGGCAAATACCAAACGCTCAGACTACCTGAACACCTTTGAATTCTTGGATAAGCTGGCGGATAACTTGAAGATCAAGATGTCCAACCAACCCAAACTGTGATCTCCTTAGCtctcaattacacacacacacactgttgacaCCCAGGACTATGGGTCCCAAGCCAACACTAAACCACTGACGGAGGGACTGTTTGACACAGTACTGAATCAATCGTTCCCATCTCCAGGAGTCTGTCTGCTAATGGAGGTTCCTTGTCCAGGAGGAGGGGATGTAGGCTGAGCTGAGGCCCCTCCATCGATCATTCACCACTATAGCAAAGCCATATCTTCTGGTAACACTCATCCAGTCTAAGTGTCCTGAATCTTAACTTGAGATCCATGAGCATAACTCATGTTTATCATGATTTAAGAGTTAAATGTGATTATCCAAGTTAGGATTCTGCCAAGTATGATCTTATGACTGTCAATACATCACATACAGATGGTTCCAGAAATCAGACTGGACACAGTCAGTAATATATTTTGCGATAATtgcactttttattttattttttatgacgTGTGTGTTTTTAAGTGTTGTCAGTCAGTGATCAGTAATAGTGGATTGTCCTGCCTGAGTTTGTTTGAGGGTCGTCTTACCCTTGTTGCCTTATTTGTTTTATGTCAAGTAATTGATCCGTGTCACACATAATATATTCCATGTCGACTACTGTGGTAGACGAAAGCCTGCTTGATTTTTGACTGTTCACGTGGTCTTTGATTCACACAAAGGTGTTCTCATCACTTACTCCTTATGGATGGTTGTGTAAGGGGTTGTTGTGGGCCTGCGTGTTATCTTTGTGTGTATAATCCATAGCTTAACACTTTACTCCTCAAATACAGAAACCAGTGTCAATGTACGTCTGCCAGTATCGGGTTGTTGGTTGGTACTCGACGGTGTGTGTGGTTAGAATATTAACtcaataaatattttattttattgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312273 lncRNA downstream 21743 55034597 ~ 55109651 (-) True G275045
TU312293 lncRNA downstream 59350 55068639 ~ 55072044 (-) False LOC110520227
TU312294 lncRNA downstream 59350 55068639 ~ 55072044 (-) False LOC110520227
TU312295 lncRNA downstream 59350 55068639 ~ 55072044 (-) False LOC110520227
TU312242 lncRNA downstream 128837 55000183 ~ 55002557 (-) True G275020
TU312392 lncRNA upstream 93333 55239719 ~ 55244575 (-) True G275151
TU312441 lncRNA upstream 166625 55313011 ~ 55313235 (-) True G275196
TU312445 lncRNA upstream 176017 55322403 ~ 55322661 (-) True G275200
TU312446 lncRNA upstream 177025 55323411 ~ 55323622 (-) True G275201
TU312450 lncRNA upstream 182356 55328742 ~ 55328941 (-) True G275205
XR_005049715.1 mRNA downstream 9381 55073493 ~ 55122013 (-) False LOC110520227
XR_005049721.1 mRNA downstream 9386 55071793 ~ 55122008 (-) False LOC110520227
XM_036974620.1 mRNA downstream 9386 55071851 ~ 55122008 (-) False LOC110520227
XM_021597393.2 mRNA downstream 80535 55047518 ~ 55050859 (-) True LOC110520226
XM_021597378.2 mRNA downstream 471713 54646623 ~ 54659681 (-) False LOC110520215
XM_036974625.1 mRNA upstream 210981 55357367 ~ 55371667 (-) False armc8
XM_036974626.1 mRNA upstream 210981 55357367 ~ 55371667 (-) False armc8
XM_036974627.1 mRNA upstream 210981 55357367 ~ 55371667 (-) False armc8
XM_036974628.1 mRNA upstream 210981 55357367 ~ 55371667 (-) False armc8
XM_021597399.2 mRNA upstream 229529 55375915 ~ 55382161 (-) True LOC110520232
TU312299 other downstream 12182 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 448589 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 1880310 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2422578 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3531164 51597935 ~ 51600230 (-) True il1rl1
TU312498 other upstream 263757 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 263757 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2124396 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 2256598 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2438000 57584386 ~ 57589183 (-) True G277749

Expression Profile