RNA id: XM_036974622.1



Basic Information


Item Value
RNA id XM_036974622.1
length 1594
RNA type mRNA
GC content 0.52
exon number 9
gene id idh1
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55131394 ~ 55146388 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAGTTTTCAGAAGAAGCAATTTCCAGGATGTCTCAGAAGATTAAGGCAGGGTCGGTGGTGGAGATGCAGGGGGATGAGATGACCAGAGTCATCTGGGAGCTCATTAAGGAGAAGCTCATCTTCCCCTACCTGGAGATGGACCTGCACAGCTACGACCTAGGCATGGAGAACCGAGACGCCACGGACGACAAGGTTACCGTTGAGGCGGCGGAAGCGACGCGACGATACAACGTGGGCATTAAGTGTGCCACCATCACGCCGGATGAGAACCGGGTGGAGGAGTTCAAGTTGAAGCAAATGTGGCGTTCGCCCAATGGAACCATCCGTAACATCCTGGGAGGCACCGTGTTCAGGGAGGCCATCATCTGTAAGAACATCCCTCGCCTTGTGCCCGGCTGGGTCAAACCCATCATCATCGGCAGGCATGCCCACGGAGACCAGTACAAGGCCACAGACTTTGTAGTACCAGGGCCTGGGAGATTGGAGATGAAATTCACACCCAAGTCTGGGGAGCCAATGAACTTTGTTGTCCACGACTTTGAAGgttCAGGTGGTGTGGCTCTGGGGATGTACAACACCGACAGCTCCATCAGGGACTTTGCCCACAGCTCCTTCCAGATGGGCCTGGTTAAAGGCTGGCCTCTGTACCTCAGCACCAAGAACACCATCCTCAAGAAGTATGATGGACGCTTCAAAGATATCTTCCAGGAGATCTACGAGAAGGAGTACCGCTCTAAGTTTGAGCAGAAGGGGATCTGGTATGAGCATCGTCTGATTGATGACATGGTGGCTCAGGCCATGAAGTCTGATGGAGGATTCATCTGGGCCTGCAAGAACTACGACGGAGACGTTCAGTCTGACTCTGTAGCACAAGGCTACGGGTCCCTGGGTATGATGACCAGCGTGCTCATCTGTCCTGACGGTCGTACAGTAGAGTCAGAGGCTGCCCACGGTACAGTGACACGCCACTACAGACAGCACCAACAGGGCAAGGAGACCTCCACCAACCCCATTGCGTCCATCTTTGCGTGGTCGCGGGGGCTGCTGCACCGGGCGAAGCTGGATGACAACGCAAAGCTGCGTGTGTTTGCTGAGGCCCTGGAGGTTGTCTGCATTGAGACCATCGAGGCTGGCTTCATGACCAAGGATCTGGCTATCTGTGTCAAAGGAATGGCAAATACCAAACGCTCAGACTACCTGAACACCTTTGAATTCTTGGATAAGCTGGCGGATAACTTGAAGATCAAGATGTCCAACCAACCCAAACTGTGATCTCCTTAGCtctcaattacacacacacacactgttgacaCCCAGGACTATGGGTCCCAAGCCAACACTAAACCACTGACGGAGGGACTGTTTGACACAGTACTGAATCAATCGTTCCCATCTCCAGGAGTCTGTCTGCTAATGGAGGTTCCTTGTCCAGGAGGAGGGGATGTAGGCTGAGCTGAGGCCCCTCCATCGATCATTCACCACTATAGCAAAGCCATATCTTCTGGTAACACTCATCCAGTCTAAGTGTCCTGAATCTTAACTTGAGATCCATGAGCATAACTCATGTTTATCATGATTTAAGAGTTAAATGTG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU312273 lncRNA downstream 22306 55034597 ~ 55109651 (-) True G275045
TU312293 lncRNA downstream 59913 55068639 ~ 55072044 (-) False LOC110520227
TU312294 lncRNA downstream 59913 55068639 ~ 55072044 (-) False LOC110520227
TU312295 lncRNA downstream 59913 55068639 ~ 55072044 (-) False LOC110520227
TU312242 lncRNA downstream 129400 55000183 ~ 55002557 (-) True G275020
TU312392 lncRNA upstream 94311 55239719 ~ 55244575 (-) True G275151
TU312441 lncRNA upstream 167603 55313011 ~ 55313235 (-) True G275196
TU312445 lncRNA upstream 176995 55322403 ~ 55322661 (-) True G275200
TU312446 lncRNA upstream 178003 55323411 ~ 55323622 (-) True G275201
TU312450 lncRNA upstream 183334 55328742 ~ 55328941 (-) True G275205
XR_005049715.1 mRNA downstream 9944 55073493 ~ 55122013 (-) False LOC110520227
XR_005049721.1 mRNA downstream 9949 55071793 ~ 55122008 (-) False LOC110520227
XM_036974620.1 mRNA downstream 9949 55071851 ~ 55122008 (-) False LOC110520227
XM_021597393.2 mRNA downstream 81098 55047518 ~ 55050859 (-) True LOC110520226
XM_036974605.1 mRNA downstream 472276 54646623 ~ 54659681 (-) True LOC110520215
XM_036974625.1 mRNA upstream 211959 55357367 ~ 55371667 (-) False armc8
XM_036974626.1 mRNA upstream 211959 55357367 ~ 55371667 (-) False armc8
XM_036974627.1 mRNA upstream 211959 55357367 ~ 55371667 (-) False armc8
XM_036974628.1 mRNA upstream 211959 55357367 ~ 55371667 (-) False armc8
XM_021597399.2 mRNA upstream 230507 55375915 ~ 55382161 (-) True LOC110520232
TU312299 other downstream 12745 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 449152 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 1880873 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2423141 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3531727 51597935 ~ 51600230 (-) True il1rl1
TU312498 other upstream 264735 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 264735 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2125374 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 2257576 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2438978 57584386 ~ 57589183 (-) True G277749

Expression Profile


XM_036974622.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_036974622.1 Expression in each Bioproject

Bar chart with 20 bars.
XM_036974622.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.