RNA id: XM_036974628.1


Basic Information

Item Value
RNA id XM_036974628.1
length 4550
RNA type mRNA
GC content 0.48
exon number 22
gene id armc8
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55357367 ~ 55371667 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGTGCAACTATAAACAATAGTTTCATTATCACAGGAAACGTTATCTGTGGCTTAAACAGACCAAATACACCCGACTAACTCCACCTAACCCATGAAATACTAAGTGCTTCTAAAGTGTTGCGTGATTTAGCTATATTTACTTTTTTAATCTGAGCAGCTGGTCTGGAGGGCAGAGTGTTTGGAAAGTGCTGCTCCGATTGGGGTGCTcgacagggggaagagagatggcGTGCTTGTTGGAGGCCCCTCTCCGCATCAGCGTGCTATCTGAGGTCACGGCCACCAGTCGCCATTATGTTGACAGGCTTTTTGACCCTGACCCGCAGAAAGTGCTGCAGGGAGTCATTGACATGAAGAATGCTGTCATCGGAAACAACAAACAGAAAGCCAACCTGATTGTCCTGGGAGCTGTGCccagGTTACTATATCTGCTCCAGCAGGGCTCGTCCAGCTCAGAGCTGAGGGCAGAGTGTGCGGTGGTGCTGGGCAGTCTGGCCATGGGCACTGAGAACAACATCAAGTCCCTGGTGGACTGCCACATCATCCCTGCCCTACTGCAAGgtctCCTATGTCCAGACCTGATCTTCATCGAGGCTTGTCTACGCTgcctcaggacagtcttcatcaGTCCAGTCACCCCAGTGCAGCTGCTCTACACTGACCCCACTGTGATCCCCCACCTCATGTCCCTGCTGAGTCGGTCACAGCGGACGCAGGAGTACATCACCCAGATCTTCTCCCACTGTTGCAAGactCCGGAGCACCAGACGGTTCTGTTTAACCATGGGGCTATCCAGAACATTgctcctcttctcatctctccctcctatAAGGTACGGATGCAAGCATTAAAATGCTTCTCGGTCCTGGCCTACGAGAACACTCAGGTCTCCATGACACTGGTGAATGtGCTGGTGGATGAGGAGCTGCTCTCTCAGGTATTTGTCAGAATGATGCAAAGGGATCAGCCCATTGACATGCAGCTCACAGCAGCCAAGTGtctAACATACATGTGTCGAGCAGGAGCCATTAGGACCGATGACAGCTGCATCGTGTTAAAGACCCTGCCGTGCCTGGTGAGGATGTGCAGTAAGGAGAGGTTGTTGGAGGAGCGTGTGGAGGGGGCAGAGACCCTGGCCTACCTGATGGAGCCTGATGTGGAGCTGCAGAGGATCGCCAGTGTAACCGACCACCTAGTGGCCATGCTGGCTGACTACTTCAAATACCCCAGCTCTGTCAGCGCCATCACTGACATCAAGAGGTTGGATCACGACCTGAAGCATGCTCACGAGCTGAGACAAGCTGCCTTTAAACTGTACGCCTCACTGGGCTCCAACGATGAAGATATCCGCAAGAAGatcACAGAGACTGAGAACATGATGGACAGGATAGTGAGTGGCCTGTCAGAATCCAGCGTCAAGGTGCGGCTAGCTGCCGTCAGGTGTCTTCACAGTCTGTCCCGGTCAGTCCAGCAGTTGAGGACTAGTTTTCATGACCACGCCGTATGGAAGCCCCTTATGAAGTTGTTACAGAACGCTCCAGACGAGGTGTTGGTCATGGCCTCTTCTACACTATGCAACCTGCTACTGGAGTTTTCACCCAGCAAAGAGCCCATCTTGGAGTCAGGGGTGATAGAGTTACTATGCAGTCTGACCCAGAGTGATAGTCCAGCCCTGAGGGTCAATGGCATCTGGGCTCTAATGAACATGGCGTTCCAGGCGGACCAGAAGGTGAAGGGGGAGATTGTGAGAGCGTTGGGAACAGAGCAGCTCTTCCGTCTGCTTTCTGACCCTGACTCTAACGTCCTGATGAAGACCCTGGGCCTGCTACGGAACCTGCTCTCCACCCGACCCCACATAGACCAGGTCATGAGTTCTCATGGGAAGCAGATCATGCAGGCAGTCACTCTAATCCTCGAGGGAGAACACAGCATCGAGGTCAAGGAACAGACACTCTGTATCCTAGCCAACATTGCCGACGGCAACACAGCCAAGGAACTCATCATGACCAATGACGACATCCTCCAGAAAATCAAATATTACATGGCTCACTCTAATGTGAAGCTCCAGCTGGCGGCCACCTTCTGTATCTCCAACCTGATCTGGAACGAGGAGGACGgttCCCAGGAGCGTCAGGACAAGCTGAGGGAGTTGGGCTTTGTAGACATCCTGCACAAACTCACCCAGGCCTCAGACCCCAACCTCTGTGACAGgGCGAAGACGGCAATGCAGCAGTATCTGGCGTGACCCTACGAGAGCAGTCTCCGATGTCGTTGCCCCTAACAACACAACTAACAATCCAATGGCCTGCCAGGAGGAGACttgcctgcctgctgccattgTTTTGTTTTCTTCTCCTTCAGTTTAATCTTAGTTTTGTTGCACAAAGACACCTTTGAGCTGCAGCGGCAGACGCCCCCCTTCCACCCCATCACCCCCAACCTGACCCCCATCCCACCCGGAGACGAGGTTGGCGGGGGAACTGGGAAACACCTTCTGCATAGCAACGGTTACTGGAGGGGGGGAGGGGTCATTCAATGGTTTttgcctttttatttttttatgcaaAGATGGATGTGAATGAAGAAGGGTtagtagagtgcagtacagtagcCAGCCAGTGCAGCACATCGCCACCATGTGGCCAGGAGGCTTTGGTGCTATTGGACTCCTAATGAGGAGACTGAACATAAAGATGTCTCAGAGAGCTGGACTAAAGGCTCTGACGAAGAGGGCAGGGTTGTGGGAGCATCGCTTCCTCCTGGTTTTATTTAGCTAATTAATgattgatattattattattattattattattattattattagaggGGCTTTATGTCACGATTGGTTGCGTTTGGAAAAAGACTGCTCAATTTGTACttttttgtgttttctttttttGTGGATACATACCTCgtaaatatatataaacatataaatatattttttagattATAATTTTCCCCCTCTGTTTCTTTTTCTCTGTGTCTGATCCCGGGTTCCTTGTACAGTAGGGTGTGAACATAATATCAATGGGAGGATGATGTGGTCAATAGAACAAAGTTAGAAGGTTGACTGGGAATATGGGCTGCTTTCACAGACCCAGGTTAAgtttagtcctggactaaaaagcactttcaatggagaatctccattgagcaTAATTTTTAAATCTCGTACTagatttagggctctattcaatctgtgttGTGGAAGTTCAGTGTTATAGCGTGATTGAAATTtcaaggcaatgttcccgcattagtggtaaacgctgcatatgttggTTCAACCGGAATGTACCTTTTACATTTCGATCTGGGAATTTGTAACGATTCAGCGATACAGATTTAATTGGGCCCTTAATCTGTATCTGGTAAACCGGCCCATAGTGTCACTATGTATGACCCTGACTCTCTCTAGTCTTACCTTTCAGGAGGCACAAACATGGATCCACGAAATAGGATAAAATGCTAAATGTCCTTCACCTGTAGCCATTTGGTTTCTCCCAGAATCTTCTAGATCTTTCCTCTCCCTGACATTTCCATTCTTACAGAAGCTCTGACAGAATGAATGCTACCATTTGAAATATATGCAGACCTGAAAGATGGACTTGGTCATTGAgtactgtctttttttttttgtccatggGGCACCGGGTGGAGGGAAGTGGAGAACACTTGTCAATGTGAGGCATGTGAACAGGTGAACGAAACAAGTCACAAGTGTAACATATCTGAATACATGCATCAATTAAAGCTCCACTGGTTATAAGAGCATTACCATGGTTGTGCCACATGTTAAAATGACTTAGGAAGTGATCCCACTGGCGCTGGACATCACGTCATCCCTGACTGATTCGGATCCAAAGCATCACAGAAGCCTGGATCTTataaaacaacactttgtttattCTTGTATAATGTATTTCTGGTAAAGTTGGTGACATTTAATAATAAAATACATCTGAAGCCTCGGGCAGCACAGTAAGCCTACCTTCCTCTCCCTTAGTTCTGAAGCAGGCACATTCCTCATGCAGATAGCTGTGACATGCATTTAACACCCCCCACCCCAAACCCCTCTCGATGGGCCCCCCCTCCTCCCACTACTCTCACACCTCCATGCAGCCGCATCCAAGTCCTCACCTTGTTACAGAAAATAGAAACCAGCATCTGAATCTGTCTATATTACGCATAGTGCACCACCCCCAAACAACTCTGGTACACATTCCAAGTACACAGCGCATCAGACGATGCTAGTAAAATTAGGCCTCTGACCAATTTAGCAGTATCTGAGCATTGTAGGATAAGTCTGTGTTATCCAGAGGTTGACAATTGTTCATGGGTTGCGGATGATGCTGGGGACATGGCAATAGTGTGTGTTGGTGCATGTGGGCTTTCATATGAAGCtgttgaagtggaaatgtctggTTGAACAACTAGTGATGGATGGAAAAGGGCCAGAACACTCCTCTGCATTTTCAACAGAAGATATTGCCAGAATATATAATTTACTaacacaaataaatacataacttacttttcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312428 lncRNA downstream 936 55355925 ~ 55356431 (-) True G275183
TU312427 lncRNA downstream 1776 55354015 ~ 55355591 (-) True G275182
TU312469 lncRNA downstream 5960 55350984 ~ 55351407 (-) True G275224
TU312465 lncRNA downstream 12587 55344531 ~ 55344780 (-) True G275220
TU312464 lncRNA downstream 15778 55341103 ~ 55341589 (-) True G275219
TU312475 lncRNA upstream 3433 55375100 ~ 55375519 (-) True G275229
TU312480 lncRNA upstream 15307 55386974 ~ 55387224 (-) True G275234
TU312488 lncRNA upstream 20590 55392257 ~ 55392949 (-) True LOC110520233
TU312490 lncRNA upstream 26223 55397890 ~ 55398246 (-) True G275243
TU312491 lncRNA upstream 28136 55399803 ~ 55400473 (-) True G275244
XM_036974623.1 mRNA downstream 210979 55132602 ~ 55146388 (-) True idh1
XM_021597395.2 mRNA downstream 210981 55131394 ~ 55146386 (-) False idh1
XM_036974622.1 mRNA downstream 211959 55131957 ~ 55145408 (-) False idh1
XM_036974621.1 mRNA downstream 212405 55131957 ~ 55144962 (-) False idh1
XR_005049715.1 mRNA downstream 235354 55073493 ~ 55122013 (-) False LOC110520227
XM_021597399.2 mRNA upstream 4248 55375915 ~ 55382161 (-) True LOC110520232
XM_021584437.2 mRNA upstream 17434 55389101 ~ 55391332 (-) True crygs2
XM_036974634.1 mRNA upstream 20522 55392189 ~ 55395003 (-) False LOC110520233
XM_036974642.1 mRNA upstream 220697 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 407836 55779503 ~ 55788119 (-) False LOC110520238
TU312299 other downstream 238155 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 674562 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2106283 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2648551 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3757137 51597935 ~ 51600230 (-) True il1rl1
TU312498 other upstream 38476 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 38476 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 1899115 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 2031317 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2212719 57584386 ~ 57589183 (-) True G277749

Expression Profile