RNA id: XM_036974636.1


Basic Information

Item Value
RNA id XM_036974636.1
length 3617
RNA type mRNA
GC content 0.58
exon number 13
gene id LOC110504295
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55430193 ~ 55496588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACCCGCTGTCAGTTAGCGCGCCCGTTGGCACGGGAAAGATTGAAAGTGACACGCAGATTGTTTTGCGCGAAATTGTGACTGTTCTATCGAGATTTCTTCAGTTAACACCTTCTCTTTGTCGCAGACATTTTGATTTCGGTCTGTTTTGCTTGAGCGACTTGGTTGTTTTGCCTGTTGTTCACTTGAACATTTTCCTTATGATGCGTTTTGCGTTTTCCTTGTTCCCGCCGGTGAAGAAGCCACGAGTTCAGAAGAGGACCGATTTGTGGCTCGGTCGTGTCTAACCGGGGACGACAGGACACAACGTGCGATCAAACGACTCCAACTGGCCGGTTGACAAGTTTATCTGCCCCGCGAGACGCAGCGGCTCGAGCTCCAGCAAGATCCCCGCGCACTCAGCAAGCAAACCTCGACGCACTGGTCTCGAGCgaaagagacacacactctctctctctctctctctctctctttctctctctctctctgaggcgaACACCACTCTCACACAGACAATAAACCAACGCACATTGTCTACCTTTGTCTCCCATCTCTCTCGGACTCGCTCACATCCAGCGCTTGGGGCACGAAGTTGTGTCCACCAGCACAGACTCCAGCGGATCTCTGCCGGTCGTGGACCCGACGCAGCCCAGCCCTGGATTCAATAATTTTAATCAATGGACAGAGCCTCCTCAACGGCCAGCAGAGGTACAGACACCCCATAAACAGCCCTTACCCTCTGGCAGTAGCCCCCCCTGGTGGTTGGAGGGGGATGGAGCGTGGTGGCGGGGAGAGCCCCCGCATGCAGGACAGTCCTGAGCGGGAGCGGCGGGGGAGCAGCCCGGACTTCAGTGGACCCCCGCCAGGGAAGATGGGGCGTTTGGAGCTCAATGGGAGCCCCACTGGGCCACGCCTCCTACGCCACAACGGCCACCCACACAGACCTCTGGGAGgtctgATGATCCCAGTGTTCTGTGTGGTAGAGCAGGCAGGGTCTGACGGAGGGATGCAGCGTGAACGAGAGcgtgaggaggtggagaggaaggagggacataGAGAGGAGCATGCTGAGTTTGTCCTGGTCAGGAAAGATATCCTCTTCAACCAGCTGGTGGAGACAGCCCTGCTGGCCCTGGGGTACTCCCACAGCTCAGCAGCTCAGGCCCATGgCATCATCAAGGTGGGTCGTTGGAACCCTCTGCCCATTCACTTCCTATCAGATGCTCCTGAAGCCACGGTGGCTGATATGTTGCTGGATGTCTATCACATGGTCACCCTCCGCATTCAgctacagagCTTTGCCAAGTTGGAGGACCTTCCGTCAGAGCAGTGGAACCACGCCACGGTGAGGAACGCCCTCAAGGAGCTTCTCAAGGAGATGAACCAGAGCACACTGGCCAAGGAGTGCCCCCTCTCACAGagtaTGATTTCCTCAATAGTAAACAGCTCCTACTATGCCAATGTCTCCACTGCCAAATGCCAGGAATTTGGACGCTGGTACAAGAAGTACAAGAAAATCAAAGGAGATTATCTGGAGAAGATGTGGCCAGGAAGAGATAATTCAGAAATCAAAGtggagagagacagcctGGCAGACTTCTGTGTCATGGGCCATCGTCCCCCTCCCCACCTGGCCCAGCTCAGCCACCTTGGAGGGGGTGGAGGTACCCTCCTCAAGGGTGGATCTGGAGACCCCCACAACCCCTCCCAACCCCCACAACAACAACCCCAACAACAACACCCTCCCTCGCCCCACGGCCAGCTCCACCACAGCCCCCCTCTGCGTGGCCAGATCCCCCCTCCCGGCCCTCCAGCCTCCCTTCAGCCTCTCCTTGGCCCAGGCGGGCTTCTCTCCCCCCAGCTTAGCCCTCAGCTTGTCCGACAGCAGCTAGCCATGGCTCACCTCATCAACCAGCAGCTCGCTGTTAACCGCCTGCTAGCCCACCAGCACCCACAGGCCCTCAACCAGCAGTTCCTCAACCACCCTCCCATCCCTCGGCCCTCCAAGGCAGGGGGCCCTGGGGACCCCGGGAACAACCCGTCTGCTGCGGAAGTCTCCACTGATATCTACCAGCACGTCAGGGACGAACTGAAGAGAGCTAGCGTCTCACAGGCTGTGTTCGCTCGCGTGGCTTTCAACAGAACACAGggCCTGCTGTCGGAGATCCTGCGGAAGGAGGAGGACCCTCGCTCTGCCTCTCAGTCCCTGCTGGTCAACCTCAAAGCCATGCAGAACTTCCTCAACCTccctgagggggagagagaccgtATTTACCAGGAGGAGCGTGAGCGCAGCATGAACCCCCCTGTCGGCCTGCCCCCTACCCCTAGCTCCAGCCCCGGGGGCCCCCGCCTCTCACAGGACGTATTTAGACCGACCATCACTAACCATGTCCCATGCCACCTCATGCAGAAGGTGTGGGAGAGAGGTCTGGACGAACAGCTCACTCCTGACGCCTGGGCTTCTATCTGGAAGAATAAGACTAAAATCTCCAACTCGCCCAAGCCGCCATGCCTCAACCCAGACCTGCCCCTGAAGCTGGAGTCTCTGGTCAACATCACGTCAGGTATCTATGATGAGATCCAGCAGGAGATGAAGAGAGCGAAGGTGTCTCAGGCGCTGTTCGCCAAGGTGGCTGCCAACAAGAGCCAGGGCTGGCTGTGTGAGTTGCTGCGGTGGAAGGAGAACCCTAGCCCAGAGAACCGTACTCTGTGGGAGAATCTGTGTACCATCCGGAGGTTCCTGACCCtgctccagacagacagagacctggTGTATGAAGAGGAGTCCAGGCACCACCACAGTGAGAGGCTGCATACTGTACTACACCTGCCCCAAGAACCACAGCTGTACCTGCTTTCTCACCAGGCACTGCACAGACAACCCCCACAACCCCTGAAGGACCACTCCCCGATGCGCGAGGACCCCATGCCCCTCCAGCGTAACGATGAAGAGTCCCCGAATGTTGAAAGAGTCAGTTCAGGAGTCGGTGGTGGCGTGGTCATTAAGAAGCCTCGGTCGCGCACTAAGATCTCTCTAGAGGCCCTGGGCATCCTGCAGAGCTTCATCCAGGACGTGGGTCTTTACCCGGACCAAGAGGCCATCCACACTCTGTCAGCCCAGCTGGACCTGCCCAAgcacaccatcatcaagtttttcCAGAACCAGCGCTACCACGTCAAGCATCACGGCCGGCTGAAGGAGCTGGGGGAGGGGGGCGGTGGTGTGGACGTCAGCGAATACAGAGACGAGGAGCTCCTCTCCAGCTCAGAGGACCCTGAGTCCAGCGAAGACGGTCATGAGGAGATGTACCCCActacagagagggaaagaagggGAAGCAACCCAGCAGGGTCAGCCCCTGCCCTGGCACCAGCCCAGCCTTCAGGGACCAGCATGGGGGCCATGGAGGAGGGCAAGGACAAGGGgcattctcatggtctgagtgggGGCCGAGCCAGCTCCCTGCCCCCTGGTAGCTCCTCATCCAGCCCCAGAGAGCAGGCTGACTTCCAGAGATAGAGACCCAGAGACCAGAGGAGAtgcagaaagagagcgagatccagacagacagacagacagacagacagacagacagacagacagacagacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312090 lncRNA upstream 17732 55414101 ~ 55414384 (+) True G274895
TU312087 lncRNA upstream 33913 55397890 ~ 55398203 (+) True G274892
TU312080 lncRNA upstream 44549 55387032 ~ 55387567 (+) True G274885
TU312068 lncRNA upstream 53122 55375913 ~ 55378994 (+) True G274876
TU312072 lncRNA upstream 57811 55373142 ~ 55374305 (+) False LOC110520231
TU312630 lncRNA downstream 92589 55589177 ~ 55589380 (+) True G275373
TU312631 lncRNA downstream 92953 55589541 ~ 55589744 (+) True G275374
TU312635 lncRNA downstream 95817 55592405 ~ 55593322 (+) True G275377
TU312688 lncRNA downstream 181527 55678115 ~ 55678400 (+) True G275429
TU312713 lncRNA downstream 210319 55706907 ~ 55707151 (+) True G275450
XM_036974635.1 mRNA upstream 20561 55405871 ~ 55411555 (+) True LOC110520234
XM_036964963.1 mRNA upstream 43394 55380671 ~ 55388722 (+) True lcmt2
LOC110520231 mRNA upstream 57258 55371759 ~ 55374858 (+) False LOC110520231
XM_036974624.1 mRNA upstream 76466 55157443 ~ 55355650 (+) False kcnh3
XM_036974619.1 mRNA upstream 387073 55032850 ~ 55045043 (+) False LOC110520225
XM_021597403.2 mRNA downstream 245109 55741697 ~ 55779314 (+) False rftn2
XM_021597404.2 mRNA downstream 245115 55741703 ~ 55779314 (+) True rftn2
XM_021597402.2 mRNA downstream 295771 55792359 ~ 55800630 (+) True LOC110520236
XM_021597413.2 mRNA downstream 337155 55833743 ~ 55838543 (+) False LOC110520240
XM_021597411.2 mRNA downstream 337156 55833744 ~ 55849324 (+) False LOC110520240
TU312074 other upstream 56590 55374546 ~ 55375526 (+) True LOC110520231
TU312073 other upstream 57107 55374546 ~ 55375009 (+) False LOC110520231
TU311754 other upstream 557001 54874399 ~ 54875115 (+) False G274592
TU310076 other upstream 1590499 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 1773433 53657461 ~ 53658683 (+) True G273004
TU312821 other downstream 403606 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 418741 55915329 ~ 55916133 (+) False G275553
TU312838 other downstream 418924 55915512 ~ 55916133 (+) False G275553
TU312836 other downstream 419156 55915744 ~ 55916133 (+) False G275553
TU314786 other downstream 1767979 57264567 ~ 57264892 (+) True G277296

Expression Profile