RNA id: XM_021597411.2



Basic Information


Item Value
RNA id XM_021597411.2
length 4596
RNA type mRNA
GC content 0.55
exon number 23
gene id LOC110520240
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55833743 ~ 55849324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGGACCACTGAGCTAAAGATTTGTACAactctcattgttctatctgtgactAGGATTTATCAATTTTTTGCTGAACGGATATGAATTAGTTCGGACTTCCGGTTTCAGTCTTACCGAACCACCAAAATGGCGAAAGTCGCCAAAACACACGAAGaCATTGAGGCCCAGATCCTGGAGATCCAGGGTATGAAGGCTGCCCTGGTGGAGGAGGGAGCAGATCAGGGTGTGGGCCTGGACTCAACTGGATATTACGACCAGGAGATCTATGGTGGCAGTGACAGCCGCTTCGCTGGATATGTCACCTCCATTGCTGCCAATGAACAGGAGGATGATGACGAGGAGGACTCTTCAACAAGTCTACTTGGACAGAAGAAACCGGGGTATCATGCTCCGGTGGCTATACTCAATGCGATACCACAGTCAGATGAACAGtacgACCCGTTCGCCGAGCACAGGCCCGCCAAGATTGCAGAGCGTGAGGACGAGTACAAGGCCAGACGACGACAGATGATCATCTCTCCGGAGCGACTCGACCCCTTTGCAGACGGGGGCAAAACGCCGGACCCAAAGCTGCAGTCCAGGTCGTACATGGATGTCATGAAGGAGCAGCACCTGACCAAAGAGGAGAAAGAGATCCGTCAGCAGATGGCAGAAAAGGCCAAGACGGGAGACCTGAAGGCTGTCAACGGCTCTGCTGCCTCCCAGGCTGCCGCTGCCGCCGCCAAGCGCAAACGTCGCTGGGACCAGACGGCCGAGAAACAGGACCAATCAGGAACCCCCAGCAACACCGGCACACCCAAGAAGATGTCTAGCTGGGACCAGGCTGACCTGTCTGCTGAGACCCCAGGACACACCCCTGGCCACACCCCCTCCAACAGCCGCTGGGACGAGACCCCTGGCAGGAATAAGGGCAGCGAGACCCCAGGGGCCACTCCCAGCTCCCGGATGTGGGACCCAACCCCCAGCCACACCCCGGCCGGAGCAGCCACCCCAGGCAGGGGGGACACACCGGGACACACCACCCCCGGACATGGGGGAGCCACAGGCAGCGTGCGCAAAAACCGTTGGGATGAGACCCCCAAGACTGAGAGGGAGACCCCTGGTCATGGTAGTGGTTGGGCTGAGACTCCCCGTACAGACAGAGGAGACGAGTCTGTGGGAGAGACCCCCACCCCCGGGGCCAGTAAGAGGAAGTCCCGTTGGGACGAGACCCCTGCCAGCCAGATGGGCTCTTCCACTCCACTGATGACCCCTGGGAAGACCCCCATTGGAACCCCTGCCATGAATATGGCCACTCCCTCTCCAGGTCACCTGATGAGCATGACCCCAGAGCAGCTGCAGGCGTGGCGTTGGGAGAGGGAGATCGATGAGAGAAACCGACCTCTCACAGACGATGAGCTGGACGCCATGTTCCCAGAGGGATACAAGGTCCTTCCCCCACCAGCAGGCTATGTGCCCATCCGTACCCCGGCCCGGAAGCTGTCTGCCACACCCACCCCCATGGGGGGCATGACGGGCTTCCACATGCAGCAGGAGGACCGCTCCATGAAGCAGATCAACGACCAGCCCAGTGGGAACCTGCCCTTCCTCAAACCAGACGACATCCAGTACTTTGATAAACTGCTGGTTGAGGTAGATGAGTCCACTCTGAGCCCAGAGGAACAGAAGGAGCGTAAGATCATGAAACTGCTGCTGAAGATCAAGAACGGAACACCTCCCATGAGAAAGGCTGCCCTGCGTCAGATCACAGACAAGGCGAGGGAGTTTGGAGCAGGGCCCCTGTTCAACCAGATCCTGCCCCTGCTCATGTCTCCTACTCTGGAGGACCAGGAGCGTCACCTACTGGTCAAGGTCATTGACCGCATCCTCTACAAGCTGGACGATCTCGTCCGCCCATACGTACACAagATCCTGGTGGTGATTGAGCCCCTGCTGATTGATGAAGATTACTACGCCCGAGTGGAGGGCAGAGAGATCATCTCTAACTTGGCCAAGGCTGCCGGCCTGGCCACTATGATCTCCACCATGAGGCCTGATATTGACAACATGGACGAgtatgtcagaaatacaacagcCAGAGCTTTCGCTGTCGTAGCGTCCGCTCTGGGTATCCCATCCCTGCTGCCCTTCCTCAAGGCTGTGTGTAAGAGCAAGAAGTCATGGCAGGCCCGCCACACGGGCATCAAGATTGTCCAGCAGATCGCCATCCTCATGGGTTGTGCCATCCTGCCCCATCTGAGGAGTCTGGTGGAGATCATCGAGCATGGTCTGGTGGATGAGCAGCAGAAGGTGCGGACCATCAGTGCCCTTGCCATTGCTGCCCTGGCGGAGGCTGCCACTCCCTACGGTATCGAGTCCTTTGACTCCGTACTCAAACCCCTATGGAAGGGTATCAGACAGCACAGAGGAAAGGGTCTGGCTGCGTTCCTGAAGGCCATTGGCTACCTGATCCCTCTAATGGATGCTGAGTATGCTAACTACTACACCAGAGAGGTCATGCTGATCCTCATCAGAGAGTTCCAGTCCCCTGACGAGGAGATGAAGAAGATCGTGCTCAAGGTGGTGAAACAGTGCTGTGGTACTGACGGTGTGGAGGCCAACTACATCAAGACAGAGATCCTGCCCCCCTTCTTCAAGCACTTCTGGCAGCACAGGATGGCCCTGGACAGACGCAACTACAGACAGctGGTGGACACCACAGTAGAGCTGGCCAACAAGGTGGGAGCAGCAGAGATCATCTCTCGTATAGTAGATGACCTGAAGGACGAGGCAGAGCAGTACAGGAAGATGGTGATGGAGACCATAGAGAAGATCATGGGGAACCTGGGAGCTGCTGACATCGACCACAAGCTGGAGGAGCAGCTGATCGACGGCATCCTGTACGCCTTCCAGGAACAGACCACTGAGGACTCTGTAATGCTGAACGGGTTTGGCACGGTGGTGAATGCCCTGGGGAAGAGGGTGAAGCCCTACCTGCCTCAGATCTGTGGTACGGTACTGTGGCGTCTCAACAACAAGTCTGCCAAGGTCCGCCAGCAGGCAGCTGACCTCATCTCTCGTACCGCCGTGGTCATGAAGACCTGCCAGGAGGAGAAGCTGATGGGTCACCTGGGAGTGGTGTTATATGAGTACCTAGGAGAGGAGTATCCTGAAGTACTGGGAAGCATCCTCGGTGCTCTCAAGGCCATCGTCAACGTCATCGGCATGCATAAGATGACTCCACCAATCAAAGACCTGCTGCCGCGCCTGACGCCAATCTTGAAGAACAGACATGAGAAGGTGCAGGAGAACTGTATTGACCTGGTGGGCAGGATTGCTGACAGGGGTGCTGAGTACGTGTCGGCCAGGGAGTGGATGCGGATCTGTTTTGAGCTGCTGGAGCTCCTCAAGGCCCACAAGAAGGCCATCCGCAGAGCCACTGTCAACACCTTTGGATACATCGCCAAGGCTATCGGaccCCATGACGTGCTGGCCACACTACTAAACAACCTGAAGGTTCAGGAGCGTCAGAACAGAGTGTGTACCACTGTAGCCATCGCCATCGTGGCTGAGACCTGTTCTCCCTTCACCGTGCTCCCCGCGCTCATGAATGAGTACCGCGTGCCAGAGCTCAACGTGCAGAACGGCGTGCTCAAGTCCCTCTCCTTCCTGTTTGAGTACATTGGGGAGATGGGCAAGGACTACATTTACGCTGTCACGCCCCTGCTGGAGGATGCACTGATGGACAGAGACTTggtccacagacagacagccagtgcCGTGGTGCAGCACATGTCCCTGGGCGTCTACGGCTTCGGCTGTGAAGACTCGCTCAACCACCTGCTCAACTATGTGTGGCCCAACGTGTTTGAGACGTCGCCCCACGTCATCCAGGCTGTGATGGGGGCCTTGGAAGGCCTCAGGGTGGCCATCGGCCCCTGCCGCATGCTGCAGTATTGCCTACAGGGTCTGTTCCACCCAGCCAGGAAGGTGCGAGACGTCTACTGGAAGATCTACAACTCTATCTACATCGGCTCCCAGGATGCTCTCATTGCTCATTACCCACACGTCTACAACGATGAGAAGAACCCTTACCTCCGCTATGAGCTGGAGTACTTCTTGTGATTCTGCTCTTCTCACTCTGAcgatttctctccctcttctctttgtCCTATCTCTCTTTGTGTATAGGACTTGGtccattttttatattatttatctCCTCTGTCTTTGTAGTGGTTGTATCCAACACAGCCACAGTGGCTGTGGCCTGAGATTGATTTTTAATACAATAAAAACTGTGTATGATAGGGAAATGGAGTATAAAATGGAACAACTTCTTAGAGCTTGTAtgtattgttttgttttctcCTTTTTCTAATCATTTCTATAAGGAatgacagacagtacagtagatgGAGTGCAGGCTCTAAGTTAGCCTTGTTATGGAATGGAAAAGCAACTCAGTGAAACTCTTTAAAATATTGTCATGGTTTCTTTTTACCGGCCTTGACCATTCCTTCTCAATGCTTTGCTCGCTTATCAGTGATCACCCCCCTGTTCTTATCAGAATGTTGCTTTATTTGACTGAATAAACGTTTGTGTATAAAATAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU312761 lncRNA upstream 42323 55788403 ~ 55791421 (+) True G275495
TU312766 lncRNA upstream 65331 55768059 ~ 55768413 (+) True G275500
TU312764 lncRNA upstream 65768 55766012 ~ 55767976 (+) True G275498
TU312749 lncRNA upstream 89485 55743985 ~ 55744259 (+) True G275484
TU312745 lncRNA upstream 95831 55737614 ~ 55737913 (+) True G275480
TU312814 lncRNA downstream 21374 55870698 ~ 55903415 (+) True G275536
TU312823 lncRNA downstream 51653 55900977 ~ 55904490 (+) True G275544
TU312825 lncRNA downstream 55498 55904822 ~ 55905288 (+) True G275545
TU312828 lncRNA downstream 60159 55909483 ~ 55910082 (+) True G275548
TU312829 lncRNA downstream 60848 55910172 ~ 55910394 (+) True G275549
XM_021597402.2 mRNA upstream 33114 55792359 ~ 55800630 (+) True LOC110520236
XM_021597403.2 mRNA upstream 54430 55741697 ~ 55779314 (+) False rftn2
XM_021597404.2 mRNA upstream 54430 55741703 ~ 55779314 (+) True rftn2
XM_036974640.1 mRNA upstream 337156 55432116 ~ 55496588 (+) False LOC110504295
XM_036974662.1 mRNA downstream 6995 55856319 ~ 55890098 (+) False ankrd44
XM_036974666.1 mRNA downstream 6995 55856319 ~ 55890098 (+) False ankrd44
XM_036974663.1 mRNA downstream 6996 55856320 ~ 55890098 (+) True ankrd44
XR_005050118.1 mRNA downstream 84239 55933563 ~ 55935062 (+) True LOC118962850
XM_036974674.1 mRNA downstream 92983 55942307 ~ 55948111 (+) False si:dkey-57a22.11
TU312074 other upstream 458218 55374546 ~ 55375526 (+) True LOC110520231
TU312073 other upstream 458735 55374546 ~ 55375009 (+) False LOC110520231
TU311754 other upstream 958629 54874399 ~ 54875115 (+) False G274592
TU310076 other upstream 1992127 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 2175061 53657461 ~ 53658683 (+) True G273004
TU312821 other downstream 50870 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 66005 55915329 ~ 55916133 (+) False G275553
TU312838 other downstream 66188 55915512 ~ 55916133 (+) False G275553
TU312836 other downstream 66420 55915744 ~ 55916133 (+) False G275553
TU314786 other downstream 1415243 57264567 ~ 57264892 (+) True G277296

Expression Profile


XM_021597411.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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XM_021597411.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021597411.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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