RNA id: XM_036974662.1


Basic Information

Item Value
RNA id XM_036974662.1
length 5263
RNA type mRNA
GC content 0.53
exon number 27
gene id ankrd44
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55856319 ~ 55890098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTgagtggaggagagagcgagaggctggAACTTCCTGTGTGCAATCTCTGTTCACCcgttttacatacagtacatatgaatATTTCCGGAGCtgtaaagtgagagagagggagtgtatgGCGATTTAGAGAGAAAGTCCCCAGTGCAGAAGCAGTAAATGCAGATTGTTTACATTAGTCGGATAAGCTTTTCCTTCTTCTGCTCACTGTGGCGGCGGTTGCCTCGACTCACCTTCGCCGCAGATAGCGCCAGTGGAGCTGGCCATGGGGCCGTGATACAGCCCGGGCCCTGACCGAGGATCTGCGTTGCATGAGAAAACTAACATTATTTACTTCCCTGACTGCTGCATCAAACAAGAGCGATAAaggaaaaaacgttttttttttactgaaatatTGTTCCAAGACAATTGCATGATCTGATGTTTGAGGGAGTGTGTTGATGTGCGGACCAAGCTGACCGAGATTATTATGGCTGTTCTTAAACTCGTCGAGCAGCCTCCGCTGGTTCAGGCCATCTTCAATGGAGACCCTGAGGAGATACGCATGCTTATCTACAAATCGGAAGACATCAACGCTCTGGATGCAGACAAGCGTACCCCGCTCCATGCTGCAGCCTTTCTGGGTGATGCTGAGATCACTGAGCTTCTCATCCTCTCCGGGGCGCGGGTCAACGCCAAAGACAACATGTGGCTCACCCCTCTACACCGCGCGGTGGCATCCCGTAGCGAGGAGGCCGTTCGCGTGCTGATCCGTCACTCTGCTGATGTGAATGCCCGGGATAAGAACTGGCAGACGCCGCTTCACGTTGCCGCGGCCAACAATGCCCTGCGCTGCGCTGAGGTCATCATCCCCCTGCTGAGCAGCGTCAATGTGTCAGACCGCGGGGGGCGCACCGCCCTGCACCACGCTGCCCTCAACGGGCACACTGAGATGGTTAACCTGCTACTGGCTAAGGGAGCCAACATTAATGCCTTCGATAAGAAAGATGGCCGCGCCCTGCACTGGGCAGCATATATGGGTCATCTGGATGTAGTGTGTCTGCTGGTCAGCCAGGGGGCAGAGGTCAGCTGTAAGGATAAACGTGGTTACACCTCTCTACACACGGCCGCTTCTAACGGTCAGATCGCTGTGGTCAAACACCTGCTCAACCTGGCCGTGGAGATAGATGAGACCAATGCGTTTGGTAACACAGCTCTACACTTGGCCTGTTTCAACGGTCAGGATGCTGTGGTCAGTGAGCTGATAGACTACGGGGCTAACGTCAGCCAGCCCAACAACAAGGGTTTCACCCCCCTGCACTTCGCTGCAGCCTCCACCCACGGAGCCCTCTGTCTGGAGTTCCTGGTCAACAACGGGGCTGACGTCAACGTCCAGAGTCGGGATGGGAAGAGCCCCCTCCACATGACAGCGGTCCATGGCCGCTTCACTCGCTCCCAGACACTCATCCAGAATGgtgggGAGATTGACAGTGTGGACAAGGATGGAAACACTCCTCTTCACATCGCTGCTCGCTATGGTCACGAGCTCCTCATTAACACACTCATCACCAGTGGAGCCGACTGCACAAGacGAGGAGTCCATGGTATGTTCCCTCTGCACCTGGCGGCAATGAACGCCCACTCAGACTGCTGCCGGAAGCTGCTCTCCTCAGGAAGGAGGTATAGCATAATGTGTCCCCTCAGTAACGACCCCTCGTCCTCGGCTCTGTCTGCAGGCTTCCAGATCCACACCCCAGACGCACTGGGGAGGACATGTCTACACGCTGCCGCCGCcgggggTAATGTGGAGTGTGTGAAGTTGCTTCTGAGCAGCGGTGGGGACCATAACCGGAGGGACAAGTGTGGCAGgacccCTCTCCACTATGCGGCTGCCAGTCGTCACTATCAGTGCCTGGAGACCCTGGTGTCGTGTGGGACCTGCATTAATGCCACTGACCAGTGGGGGCGCTCTGCCCTGCACTACGCAGCTGCCTCCGACCTGGACAGAAGGCGACGTCAGGCTCTGGAGCCAGAGAGTGAAGGGGTGCAggcagagaaggagaaggaggctgCACTATGTCTGGAGTTCCTGTTGCAAAGTGGTGCTACTGCCTCTCTGAAAGACAAGCAGGGCTATAGTCCTGTCCACTATGCTGCAGCCTATGGCCACAGACACTGTCTAGAGctgCTGTTGGACCGAGACGAGAGTCAACAGGAGCACCCAGAATCTCTGTGTGCCAGGAGCCCCCTGCACCTCGCTGCGTACCACGGCCATGCCCAGGCTCTGGAGGTGTTGCTGCAGGGGGAGAGGGAAGTGGACCAGGGGGACGAGGCTGGTCGTACTCCTCTGGCCCTAGCGGCCCTCAGGGGCCACACGGACTGTGTCCACACCCTCCTCAGCCAGGGGGCCTCGCCACGCACCACAGATACCAACAGGGGACGCACCCCTGTACACCTAGCAGtGATGAATGGCCATACCTCGTGTGTACGCCTCCTGCTGGATGACCAAGACAGTGCAGACCTGGTGGATGCTGCAGACTCTCGGGGACAGACTCCTCTGATGCTGGCGGTGGCAGGGGGACATGTGGACGCTGTGTCTCTGCTGCTGGAGAGAGAGGCTGCTGTAGACACAGCAGACAGCCATGGCCTGACTGCCCTGCACCttgggcTGCTGTGTGGTCAGGAGGAGTgtgtccagtgtctgttggagCAGGAGGCCTCTGTGTTGCTGGGGGACTCCAGGGGCCGAACAGCCCTCCATCTGGCTGCAGCGAGGGGCCACGCATCCTGGCTTGCTGAGCTGCTGAGTATCGCTTTTTCTGAACCGCCCACGCCCCGCCTCCGAGACCACCAGGGGTACACCCCCCTgcactgggcctgctactatggtcacGAGGGCTGTGTGGAGGTACTGCTGGAGCAGAAAGGTTGTCGCTGTATCGATGGGAACCCCTTCACTCCCCTGCACTGTGCTGTGGTGAATGATCATGAATCCTGTGCCGCACTACTGCTGGAGGCCATGGGATCAGACATCGCCAGCTGTAAGGATACTAAAGATAGgACTCCACTCCATGCTGCAGCGTTCTCTGGTCATGTGGACTGTGTCCAGCTGCTTCTGTCCCATGATGCACCTGTGGATGCTGTGGATCAATCAGGGCGCAGTGCGCTGATGATGGCTGCAGAGAAGGGAGGAGTGGGGGCTGTAGAGGTGCTGTTGACCAGTGCTAACGCCAGCCTAGGTTTGGTCGACCAGAATGGCAACACAGCCCTCCACCTGGCCTGCAGTAGCGGAAAAGAGGATTGTGTTCTGTTCATCCTGGAGAGGCTAAAGGATACTGTTCTCATAGGTGCCACAAACGCAGCACTGCAGACGCCGCTCCACCTAGCAGCTCGTAGCGGTCTGAAACAGGCTGTCCAGGACCTGCTGTCCAGGGGGGCAAGTGTTCAGATGTTGGATGAGAATGgtCTGACGCCTGCTCTAGCTTGCGCTCCTAGCAGGGAGGTGGCTGACTGTCTGGCTCTCATTCTGGCTACCATGATGCCTTTCTGCTCCCCTTGCAGCTCCGGAGTCCCCTCCCCAGGTTCCCTCCTGAGGGCCCTATCCAGGCAGAAGGGTTCGCGGGACCCTCGTAGCCCCAAGGCCCCCTCTGGCCCCTCCAGCGAGGGAAGTGCCAGTCAGGGCACCACTGAAAACGACTCAGACTCAGAAACCTTTTGACCCCTATGACTTTTAAAAGACTACCAGGATGTCTGCAGAGCCGCAGTTTCCCACCACCACGAATCCCTCGCTTGTGTCCCAAGAGTAGAACCTGTGTGGGGGCTTGTACAGGACTTTGTCCCCCCCTAATGGCTGGAGCTCAATCATGTGATCCTAGCTGCTGGTGTTTCTTATCCAGATCAATCTAGGTACTCCGTCTCAGCTTGGCTATCTATGACAGCAGCTGAGACTTTTCTAATTAAAGCCATTTTGTTTGTATGAAAGAggaccttttaaaaaaaaaaaaagtttattttggttGATTGATGTACCAAATATTGACATATACCTGTAGTTAACACAAGTATATGTATATTTTTGTGTCAGCGTTCATACTTATCTGCCCAGAGATGTGAGTATAGCACAAACCAACTAAAGCACAATTCTACAATTGACTTAAATCTATTATAAAGAAACATGATGGCATGAGGCGGATAGAAGTGGTACCCTTTCAACTTCTTGTTTCCACACCAATAGAAATCACCCACGTCAACTAACCTGGAAAAGCTCTGGGCTGTAGTTATTGGCTATAGGTGACTAGGACTGTTCCTGATCCTGTCCCTAGTGTTACAGGACCACAGTGCTTCAGTAGTTTACATGATCAGGTCTCCAGTGAAGAGGTTGACACCTGTACGGTATTTATTAACGCTTATATTATGGTACAGAATACTGCTTGCACTTAAACTGTAAAGGAGAGCAGGACCTtgacctctctccatccccctttcCCATCTAGTTTGTCTACCTACCAGCAATGTGCCAGTCTAACTTGTCCAGTGCCTTGTTAAACCTTTGTATTCattttttaatttacattttccAAAAAAAGTGTACGCATTCTTCTGGTGCGTGTGGtgtctattcaatccgtatcgcagaagttcagctttacatttaaaggcaatgttcctgctTGAGCGGAGACGACCGTAACATTTCTATAGCGGAATCTGTCACGCTTCAACtgtacagattgaatagagccctagatTGTGTATTATGGATGTATGTGACTGAGATGAGTTGATCAACTCTTGGGGTCATGTCACTTCTAaccctgaagaaaaaaaaacaccaaTGTTTTTACACTCCTATGATCAGAGACGTGTGTATGTCTGCAACAATATGTCGTTCTGCATGTCATTGTAAAGCACAGCCTTGTCTGTAATAACTCTACCCCATAGCACACACTTTTTAAAAAGCACAGTGTTAGTTTAAACACCTCAAGGCTTGTTGATAATGAAAGTAACAAGAGAttgggtctgtgtcccaaatggacccctattccctacatagtgtaatACTTTTGAGAAgaaccctatgtagtgcactatagggaatatagCCATTTAGGATGCTGCCATGGATCAGTATTATGCCAGAAGGAGCATCACACCACCAGTCAGTTGTGACAATCGGATCAGATTGATTTTCATACCAGTTCCTGATGCAGTATGAAATGCTCAAGGCTGTTTGTCTTTTTATGAATGAATTGTACAATAATATAAACATCTGTTTTAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312761 lncRNA upstream 64898 55788403 ~ 55791421 (+) True G275495
TU312766 lncRNA upstream 87906 55768059 ~ 55768413 (+) True G275500
TU312764 lncRNA upstream 88343 55766012 ~ 55767976 (+) True G275498
TU312749 lncRNA upstream 112060 55743985 ~ 55744259 (+) True G275484
TU312745 lncRNA upstream 118406 55737614 ~ 55737913 (+) True G275480
TU312823 lncRNA downstream 10879 55900977 ~ 55904490 (+) True G275544
TU312825 lncRNA downstream 14724 55904822 ~ 55905288 (+) True G275545
TU312828 lncRNA downstream 19385 55909483 ~ 55910082 (+) True G275548
TU312829 lncRNA downstream 20074 55910172 ~ 55910394 (+) True G275549
TU312830 lncRNA downstream 21715 55911813 ~ 55912242 (+) True G275550
XM_021597411.2 mRNA upstream 6995 55833744 ~ 55849324 (+) False LOC110520240
XM_021597410.2 mRNA upstream 6995 55833745 ~ 55849324 (+) False LOC110520240
XM_021597412.2 mRNA upstream 6995 55835832 ~ 55849324 (+) True LOC110520240
XR_005051418.1 mRNA upstream 12496 55843754 ~ 55843823 (+) True LOC118964369
XR_005051417.1 mRNA upstream 13976 55842205 ~ 55842343 (+) True LOC118964367
XR_005050118.1 mRNA downstream 43465 55933563 ~ 55935062 (+) True LOC118962850
XM_036974674.1 mRNA downstream 52209 55942307 ~ 55948111 (+) False si:dkey-57a22.11
XM_036974673.1 mRNA downstream 52443 55942541 ~ 55948120 (+) False si:dkey-57a22.11
XM_021597416.2 mRNA downstream 52447 55942545 ~ 55948111 (+) True si:dkey-57a22.11
XM_021597418.2 mRNA downstream 58495 55948593 ~ 55953872 (+) False LOC110520246
TU312074 other upstream 480793 55374546 ~ 55375526 (+) True LOC110520231
TU312073 other upstream 481310 55374546 ~ 55375009 (+) False LOC110520231
TU311754 other upstream 981204 54874399 ~ 54875115 (+) False G274592
TU310076 other upstream 2014702 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 2197636 53657461 ~ 53658683 (+) True G273004
TU312821 other downstream 10096 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 25231 55915329 ~ 55916133 (+) False G275553
TU312838 other downstream 25414 55915512 ~ 55916133 (+) False G275553
TU312836 other downstream 25646 55915744 ~ 55916133 (+) False G275553
TU314786 other downstream 1374469 57264567 ~ 57264892 (+) True G277296

Expression Profile