RNA id: TU313833


Basic Information

Item Value
RNA id TU313833
length 1075
lncRNA type sense_over
GC content 0.48
exon number 1
gene id LOC110520241
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55890382 ~ 55923883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agccaagtaaagcccccccggccagACCGTCCCCTAACCTGGAagatgctgggacaattgtgtgcgccctatgggactcccggtcacggccggttatgacacagcctgggatcgaaccccaggctgtagtggcgCCGCAACACttcgatgcaatgccttagacagTTACGCCACTCGAGGGCCCCTTTCACCTTATTCTATCTCACTCTGTATCCTGCTCTCTCACTCTGACACTCTTTCTCGCTCGCttgctcgccctctctctccatctcgcaattactctttcgctttctctctctcttgcttccctCTATCCTCAATCTTTCcctatatctctgtctgtataATTTGTTCTGTCCAATTTACAATCCATTCTTGACAAAGCAAACATAAGTCATTTTTGACTGACTGTGATGACATGTAGGACTCATCCCAGCTCAAAGACCTGTGGAAGAAGATTTGTCACAACACTACTGGTATGGAGTTCCAGGACCACCGCTACTGGCTCCGTACATACCCCAACTGCATTGTGGGGAAGGAGTTGGTCAACTGGCTGTTAAGGAATGGAACTATCTCCACAAGGTAAAGACAGACATCATGCTGAGTGAAAACCATTCTGGATGTCTGAGAAAGCATCCTGTTGTATTAAGCAGAGATTACATGAGTTACTAATGTTATTTTTCCCTCATccatcctctttctctgtctctctatcgctcATTCACACTCTTGCACACTCTTGCAGGGCACAGGCGATAGCCATTGGTCAGGCTCTGGTAGATGGTCGTTGGTTGGACTGTGTCACTCACCACGACCAGCTGTTCAGAGATGAGTACGCTCTCTATCGCCCCCTACAGGTGAGATACTGTTTTGTGGGAATAAGGGGAAGAGTACATTAACAATGCTGATGGGGGTGgtgttgatcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcagatgttgacgcacgttggctaggaaaaactccctagaaaggccaaaacctaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313819 lncRNA downstream 29845 55881007 ~ 55881558 (-) True G276421
TU313856 lncRNA downstream 143067 55766309 ~ 55768336 (-) False G276458
TU313857 lncRNA downstream 143067 55766309 ~ 55768336 (-) True G276458
TU313844 lncRNA downstream 171647 55739422 ~ 55739756 (-) True G276446
TU313843 lncRNA downstream 172815 55738370 ~ 55738588 (-) True G276445
TU313828 lncRNA upstream 8057 55920534 ~ 55923859 (-) True LOC110520241
TU313832 lncRNA upstream 21359 55933836 ~ 55934130 (-) True G276434
TU313818 lncRNA upstream 24140 55936617 ~ 55937022 (-) True G276420
TU313897 lncRNA upstream 30942 55943419 ~ 55944159 (-) True G276497
TU313919 lncRNA upstream 64983 55977460 ~ 55977673 (-) True G276518
XM_036974651.1 mRNA downstream 90161 55779503 ~ 55821242 (-) False LOC110520238
XM_036974648.1 mRNA downstream 90193 55788401 ~ 55821210 (-) True LOC110520238
XM_021597406.2 mRNA downstream 119228 55788401 ~ 55792175 (-) False LOC110520238
XM_021597405.2 mRNA downstream 123284 55779503 ~ 55788119 (-) False LOC110520238
XM_036974642.1 mRNA downstream 195618 55592364 ~ 55715785 (-) True LOC110504309
XM_021597425.2 mRNA upstream 71396 55983873 ~ 55985472 (-) False LOC110520251
XM_036964471.1 mRNA upstream 71396 55983873 ~ 55985477 (-) True LOC110520251
XM_021597424.2 mRNA upstream 74626 55987103 ~ 55988048 (-) True LOC110520250
XM_021584491.2 mRNA upstream 85289 55997766 ~ 55999047 (-) False LOC110505323
XM_036964483.1 mRNA upstream 85291 55997768 ~ 55999561 (-) True LOC110505323
TU312498 other downstream 499916 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 499916 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 792191 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1228598 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2660319 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1358305 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1490507 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1671909 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6802098 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9057072 64969549 ~ 64970755 (-) True G286522

Expression Profile