RNA id: XR_005050118.1


Basic Information

Item Value
RNA id XR_005050118.1
length 1297
RNA type mRNA
GC content 0.36
exon number 3
gene id LOC118962850
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55933563 ~ 55935062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taggctaccctgccaccccataaaGTGTAAAGGAGGGGAAATAACTCACACCATGCAGCAGGACACCTTCAGCTGTGGGGTCTTTATAATGCAGGTTTGATAGTTATATTTTCAATAATGAATGGTTAGCTGTTATGTGACAATTaggtaaaaaaaactattttattttTTGGTGTAGATGGCCAAGGAAGTTGCACAGAACTTCCCCAACATCCCCTCCCAAATTCATATGGAACCTTCAAAAACATATGGAGCAACTGCGAAAAGAAATGGCTGAGGATATTCAAAAAATGTCTGAGTTCAACAAAGCCAACAACTGCTTCATGTGTGCCACTGATAAAGAACCTGGATATGGCCCAAAGACTGACTGGGTTAATCTTTTGACAACAGTGATGGCATATTGAATGTTTGCATGCCAACGGTGGTTCCATGTGCTGTAACTAGGAATGAAGACAAAACAGTTCAACAGAGTAAAGAACACAAACTGGAAGTACagtctttgttgttgaaaatgtatgctataccccatccacactgaagaggctctgaaatgtacatcaaccagggataaagagaaagTTAACACTGTGAAATGTTTCATACTTATTTGAAGTTAAGTGTCTGTTGACATGTTGGAAAGACTAAAGGTCTACAATTTCTGTTTAATTTGTCAATATTATATTTTTATTAATTGCTTTACTGGCCACCATTACCATGGTTacatgttcagtatatgtattgaccAGCCTACCTCactagctcactctccatccctgctttggacaattaatagcatGACTCTCGTACTTTGCTCTTTTCCTTTATAGTTGATATTAACGATGAAAGGAgatattatctgtctctctcctattgttGTTAGCTGTTAAATACtgtggaaaaataaaaaaaactgggaAAATAAGTACTTAACTACCAATTTGTATAGATAAATATTAAAGAAAAGGGtaaacacaacactggactgaCCCCCCTAATTATCAAACTAATATTAATGTACAACAATATAGAAGAGACATACGAGGTTATGCATTATGGGTGTATATCCACTGCACGCTTCTTAGGTGTGTAATTGatatgaccaaggagctattgataTTTAAAACTGAAAAATGTACATTAAACCGCGTTATTGTAcagtacacaaacaagtgtgcaataCAGAAGGGTACATTCTGCACCACGTTTGAAGtaagtaggtcacatgaccaaggagctatttaAATTTGGAAAAATTCATGTAAAATGAGATGAAAATGGAAAATGGactaactaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312845 lncRNA upstream 13193 55919833 ~ 55920370 (+) True G275559
TU312842 lncRNA upstream 14979 55918061 ~ 55918584 (+) True G275556
TU312841 lncRNA upstream 16015 55917315 ~ 55917548 (+) True G275555
TU312834 lncRNA upstream 17430 55915893 ~ 55916133 (+) True G275553
TU312839 lncRNA upstream 18671 55914292 ~ 55914892 (+) True G275554
TU312811 lncRNA downstream 13788 55948850 ~ 55949120 (+) True LOC110520246
TU312909 lncRNA downstream 73377 56008439 ~ 56011288 (+) True G275598
TU312988 lncRNA downstream 205192 56140254 ~ 56175231 (+) True LOC110504343
TU313035 lncRNA downstream 278093 56213155 ~ 56213389 (+) True G275716
TU313038 lncRNA downstream 282256 56217318 ~ 56217543 (+) True G275719
XM_036974662.1 mRNA upstream 43465 55856319 ~ 55890098 (+) False ankrd44
XM_036974666.1 mRNA upstream 43465 55856319 ~ 55890098 (+) False ankrd44
XM_036974663.1 mRNA upstream 43465 55856320 ~ 55890098 (+) True ankrd44
XM_021597411.2 mRNA upstream 84239 55833744 ~ 55849324 (+) False LOC110520240
XM_021597410.2 mRNA upstream 84239 55833745 ~ 55849324 (+) False LOC110520240
XM_036974674.1 mRNA downstream 7245 55942307 ~ 55948111 (+) False si:dkey-57a22.11
XM_036974673.1 mRNA downstream 7479 55942541 ~ 55948120 (+) False si:dkey-57a22.11
XM_021597416.2 mRNA downstream 7483 55942545 ~ 55948111 (+) True si:dkey-57a22.11
XM_021597418.2 mRNA downstream 13531 55948593 ~ 55953872 (+) False LOC110520246
XM_036964987.1 mRNA downstream 22269 55957331 ~ 55961495 (+) True LOC110504321
TU312833 other upstream 17430 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 17430 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 17430 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 32820 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 558037 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 1329505 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1854672 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 4117654 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 4117654 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 4352326 60287388 ~ 60290567 (+) True G281141

Expression Profile