RNA id: XM_021597416.2


Basic Information

Item Value
RNA id XM_021597416.2
length 3558
RNA type mRNA
GC content 0.46
exon number 9
gene id si:dkey-57a22.11
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55942307 ~ 55948120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATGAGCGATCTCAGCTGTGATTAGCTCGTTGCAGTCCAAAGAGCACGCCTATTTTTTACTTGAAACAGCGGCGCCGGTTGGTTGCTAGAATGTTTATGTTTAAGCTGAGCCACCGGTAATCTAGCTAGCATGTAAATACAACTAGTTAACGTTTTCACCGGCTATATTAACGTTCCAATTACATAGCTATAGCAAATCCGTCCACTTTAAATAAGAAGACATAACGCCCGGATCAGGATGAACATGTCAGCTGAGGGAAGGACCATCCTCTCAACTATGTTACCAGGGAAGAAACCTATGCCCTCGAAGGCTGCTAAAAATAACTCCCTAACAGTGGCATCGAAGATAAAGACCAAGATTCTCAACACATCCTCGTTCTTCAAGGTCTCCCTGAAGACTAACAACAAGGCTCTGGCTCTGGCCTTGGTGGCtcagagggagagaagcagaCAGCTTGAAGTGGAAACTGTGCACCTACGGAAACAAGTGGAGTCTCTGAATTTTGACCTGGCTATTCGCAGATTCAAGCACAACCAACTGATTATAATCTTGAAAGACCTTCAACGCAACACTTTGGATAACTTGGAAAGGGCTGTGGACCTCTTCTCTGATGAAAATgattCCCCTGAAATATCTGAAGACCGCAGTAAGCCACCCCCCGATAAAAAAGAGGAAAATGGTCAGATGgagagGGTAGCGGTTCAGATACCTCTTATCATAGCAGAGCAGTCCAGGGATTTGGTGTCCCCTTCAAAACAGACCAGCATGAGCCAAGAGGTTGTAGTAAATGACAGAGGAACCACGTCCACAAATCCTTTTGGGACCCAAAGTAGGTCATCAGAGTCCAATGCCAGTAAAGACAGCATTAATAAGATGGAGCAACAAGTGGACAATACTTTGAAATCGACCCAAAAGAGAACATCCCGGCAATCCAGTAGCCTAAAAGATGAGGTGGAAAAGTGGTCAAAGATTTATTCTGACGCTGGACTTGACCCTATCCCAGCAGTCTTGCCTTCTGTTGTCTCCACAACTAATATTCTACAGCCCTCTGGTACTGATAAAGTTGTGCACCATCCAAACAGCTTAAAGGTGGAGACCACATTGGCGCATGCAATAAAGACTGCTGTCGGGGAAGCAGAGAAGACCACCATCAATGATACAGAGATGGAGATAACTATTGGGGACAGCGCTGCTGAAATCATTACAGTGGAGACCAAGCCCAAGAAAGCTGGTGGACCGAAGAAACTGAAGGTGCCAAAGACAAAAATCCCTTGTCTATTAGTGAAGGTTGGAAATAAGAACTGTGGGCCAACACGTGTTGTTGAGAATCTAGAGGTGAAGAGCTCTGCTGTAAACGTGGAGCTGCCGACAGCGATACAAAAGGTGTTTTCCGCAACACCACTACATACAGACAACCCTACAGCGGAGGGTGTGGATGTCGAACACCGAGAAGAGAACTTCATAGAGAACTCAGACAGTGAAATAGAATCCCTTGTTGCCCGCAGAAAGACTTATGTCACCTCTCGCATCACCAAACACAAAAAACCTACCCGAGAATCCCATAAAACAACACAAGATTTTCCAAAAACGTTTGACCCCAGAAAAACTTTTGGAGTGCCTCTCCAATCCAAATCCCATCGAAGTGTCTCACCTGACCCGTTTGAAGATGACTTTTTCAATGACCCTGAAGCTCAGAAGTCTGTATTTAAACTAGCTGGGGCAAACCCATTGGTCATAGATGCCACGGAGAACAAAGTCACTAAAACTAAAGGTCACAAGACTTTTGTGATTTCTAATTTTGTGATTTCTAATGAGCCTACATCTAGAAAGGGCCAGAAGAAATCCAAAGAACGCAGGAAGACTAAAGCACAGCCTGTCATGGTGGACCATGAATTACTCATTGAAACAGAAAAGGATCCATTCCTTCTGCCTCAATCTCTCATTGAAGAGGAGTCTCATTCTCCTGAAGGGTGCACAGCCTATGTAGACATGGATACCACCCTGCATGAATACAGGGAATCACACAGGGCTTCCAGACCTCGGTCCACTACACGGAGCAGTAAGAGACCCACCAAAGTGAAAGGCAGAGGGACGTTTGTGGTCTCGGTGAACAGGGACAGCTCCTCGTTGAACAGTACAATATTAGATGATGCTTGGGCTGAAAAGCTGGCGTGCACTCCGACTACAGGGTATGACTCTGTTGCAGAAGAAGGGAAAGAAACGGTCTGGGAAGAAAGCATAGAGGAGCATCTGACTGGACCTCACCCAGATCACTGTCTAGCTGCTGGGCGCAAGACTACAGACTCTGGGGTTGAAGAAACTCATGCCTCCTCTAAACGTCCATGGCTTGCTACCCAGGAACCTGCAAGGAATTCAGAGGGCCAAGAAAGCTTATGCGTTGAGGAAGAAATGCCCCCATGGGAGATCGGTGACCCCATTTCAGTTGCTGCAAAGCAAAAGCCTAAGAAAGCCAGGAGAGTGGAGATGGCAAAATCAAGAATGAAGAGTGATTCACAGAAGGGTTACTGTCTTGCCCCTGTGAAGGAAAGGAAAAAAAAGACTAAAAGTAGCATCACTAAAGAATTGGCGCCTGGGGTTGCaggtaatattttgtctactctGGATAGCCAGAGTAGTATAGGTGTACGCACTGCAGCACAAAATGCAGAAGTACAGCCTGTGGCGGATCCCAAAGTTTTGCACGTCTTCACACATTCTGCCACCGCTGAGGAGAGCTGTGAAACTCATGAACGTTTGTCTTCACTTGAGGTCCTGAGTCCAGACTTCAAAGTCAGCAGCTTCAAGCCCCGGTCCAACCATGGCCCTAAACCGAGATGTAGAGCCACTTTTGTCATACCCAATCGTTTTAGCGATTCCACCAGAAACGGGAAGAACCACATTGTTCCTGACTCCTTGTCCCAGGATGATGGTGACACAAACAGCCGGACATCTAATGTGTCATTATCAACTGTTGAGACCAACACAGAATTGCCTGACAGTGGTGAGGGAGTACGTCAGAGCCTGAGGGAGCTGCTCATGGACGATAGGCCTCCGTGGGAGTCCTCTGTGGATGTCAGCTGTTCAAATGAGACTGGATTTGACACTCCAGCCTCAAGCCCTGAAAGGGTTGCTTCTTCTGCTCACAAGGTTGCTGTATATAAAGAGTCGGCTGAGGTTATGGCTGAAAGATCTCCAGTAGCAGAAAGAGCCCTGAAGTCACTAACCAACACCAACTGGACGGATGATGAGGACACAGGACGGGCCAGGCGACGGGGAGCTGCCATTAGCTACAAGTTGCCACCCATTAACTGCAAAATGAGACGTGGAGATAAGTTCTCAGACACCAAGTACCTGAGTTCTCCCATTTTTAAAGCGAAGAAGAAGAAAAGACGACAACAGAAGGACACACATAAACCTGACAGTTTGGAGAACATGCATTCAGTTAATTGACTTTATTCTGTGATCTAATTTAATTCTTACACGTATTGCCAATGCTTTTATTGTTTTTCCCTTTTGTTTTAATATAAGtttacaaataaaatgtcaaTACATTTTA

Function

GO: NA

KEGG:

id description
K11581 SGOL2; shugoshin-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312845 lncRNA upstream 22175 55919833 ~ 55920370 (+) True G275559
TU312842 lncRNA upstream 23961 55918061 ~ 55918584 (+) True G275556
TU312841 lncRNA upstream 24997 55917315 ~ 55917548 (+) True G275555
TU312834 lncRNA upstream 26412 55915893 ~ 55916133 (+) True G275553
TU312839 lncRNA upstream 27653 55914292 ~ 55914892 (+) True G275554
TU312811 lncRNA downstream 739 55948850 ~ 55949120 (+) True LOC110520246
TU312909 lncRNA downstream 60328 56008439 ~ 56011288 (+) True G275598
TU312988 lncRNA downstream 192143 56140254 ~ 56175231 (+) True LOC110504343
TU313035 lncRNA downstream 265044 56213155 ~ 56213389 (+) True G275716
TU313038 lncRNA downstream 269207 56217318 ~ 56217543 (+) True G275719
XR_005050118.1 mRNA upstream 7483 55933563 ~ 55935062 (+) True LOC118962850
XM_036974662.1 mRNA upstream 52447 55856319 ~ 55890098 (+) False ankrd44
XM_036974666.1 mRNA upstream 52447 55856319 ~ 55890098 (+) False ankrd44
XM_036974663.1 mRNA upstream 52447 55856320 ~ 55890098 (+) True ankrd44
XR_005051418.1 mRNA upstream 98722 55843754 ~ 55843823 (+) True LOC118964369
XM_021597418.2 mRNA downstream 482 55948593 ~ 55953872 (+) False LOC110520246
XM_036964987.1 mRNA downstream 9220 55957331 ~ 55961495 (+) True LOC110504321
XM_021584468.2 mRNA downstream 14684 55962795 ~ 55964012 (+) True LOC110505308
XM_021597420.2 mRNA downstream 17981 55966092 ~ 55968048 (+) False LOC110520248
XM_021597422.2 mRNA downstream 18000 55966111 ~ 55968048 (+) True LOC110520248
TU312833 other upstream 26412 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 26412 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 26412 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 41802 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 567019 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 1316456 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1841623 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 4104605 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 4104605 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 4339277 60287388 ~ 60290567 (+) True G281141

Expression Profile