RNA id: XM_021597418.2


Basic Information

Item Value
RNA id XM_021597418.2
length 2201
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110520246
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55948593 ~ 55953872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGTTGTCTTTCTGCTCCCCTCGGTCTCTACTGTACACAGCCTTTCCACAAGCAGGTGTCCCCTGAAGCGGCTACCGTTTGCAGTGTGTCTTTTGGTTGGTTTATTTACATGAAACACATTTGTGATTTTGTGCTACTCTGACATTTGGAGTAGTACTGCAGTTTTTGGGTGTAACCATTGCTGATAATTCTGCATCGTGTGGTAAGTACAGATTGCTTTACAACATGAATGTGTGTCTCTGTATTAAAAATATGACCAGCTGTAATGTTATATGGATTTAGATAGCCAATTTGATCATGTAACTCAGATTTGAATAAGCACCCATTTTACCAGGCACATGCTACATAAAATGTTATGTAAATCAACAGTGACCTATTTAGGTCAACATCTCATTTTGGAGACTAGTTGTGGGAAAAGGTTGTGAGGCCAAATCTTTGTCAGACAAAGTCTAGACCTACTTCTAATCGCCTTGCTTTTGCCTTGCTTAAGCACTTCAGCCTGCACAATAATCGTCAGTGATTAAAGGTTTAGTAAAAACATATTTGTCTTCTGCTGGATGTGAGTTTAATGGCTTGTATCACATTTCCTGGACCCTGTCTAGGGCCAGAGAGGTGCCAGGTTCAAGACTACTCTGCAGTCTGCACTATGTCTTATGTCTCATATACTATGTCTTGTATATGAGCCCCAGCTGAGGTCAGCGTGGATACGCAAACAGACATGCAGTATCATACTATATCATCACCTGTTGATTTCTTTCCATCTCCATCCTTTATCTACAATGTAACTTCCCTTCCTCCAATTTCTTACCCTGGTCCAAGATCGGTTTGTGCTGCCATGCCAACTCCTACGGTCATTGTCAAGTACTTTGACGTTATATTTGCAAACCTAGTTTTGTGTAGGCTACAGGACCCCCAAGGAGTTATCCCTCTGCATGAGTAGCGCTATCTCAGAGAAATGGAGACAAGGCGACTGAGAAGAGACATTGAAGCCCTTCTGGGAGATTACATTGGTCAGAAACTGAGAGAGAATGGCTTTGACCCCAAGGGGAAAGGATCCACTAGCATGCTGGATGACCTGGCCCATTATGACTTGGCCATAAGTGTTGCCCTTTGGTGGCTAGAGAAAGAGGAGCGACATGATGTGATGGACAGAGACATTGTTGGAGTGGGCAGCCCAGGTTATAATGACCAGTACCCCAACCACCTGGAGAGAGAAGCCATGATCCTTTCTTCCTTCGCTGGGATGATCCTGAATAGCTTGCCTGTAAAAGACATTCTTGCCCTCTACACCACCAAACCGTCTGCCGCTTATCCCCACCAGCACTCCAAGAGCGCCATTGTTCATCCCTTCACCTTGTCCTATCACCCGTTTGCCATGCTGGGCTCATTCAAGGCCGTGGACCACTCCAGAAAGCAcaCCCAGAATTTGAAGCGATGGCTATCTGTGCAGGGTAAACGAGGTGCTGCCCCTGATGGACGGAGGGCCTTGGTGCAGTCCTCCTCATCCACATCTAACTCCTTTCTCTGTGACAGTGGTGAGTCCTTGAAAGAACAAGCAGAGCATTATGAAGTACCACAATAATCTCTACAGGATTAAGCAAAGTCCTTTCCTCTTCTGTGTTACTACAccattattatattgttattacaTGGTTATTACAGGGTTATTCCTGTGTTATTACACTGGGTGAAATTTGTGACGTCCCTGTTATGAGCCTGCTACTATGAGCCTGCTACTACTGGGCCTTCACATTCAAGGAACCCTGGCCAATAGTAAGTATCAATCCTCCAGTGTGTTATCATGTCACTAGGGGTTTCGTCTATATTAGGTTGTAGCTCAGACCATGTCCATCTATAAGCAATACAAATGTTTGACTACATCAGACATTACTGTACACACTTTACTGTACAATAAACCATTCACTGTCTGTAACaaagttgcctagttaaataaaggttcaattaaaaaatacaTATGTATATCAGTTATGTGACAATCAGGCATGTAGTGTTTAAGTGCTAATTATGGGGGAATTCTGACCCGAGTTAAGCGCTCCTAAATGGAATGTATTTTTtatgcatttttttttctctATGCATATTCTGACCTTGAGAATAGCATGCCAATCACCCGCTATTCGTTTGGGGTGGAGATCAAAGAGAGGAAGTTGTgtcaacatacagtggggcaaaaaagtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312845 lncRNA upstream 28223 55919833 ~ 55920370 (+) True G275559
TU312842 lncRNA upstream 30009 55918061 ~ 55918584 (+) True G275556
TU312841 lncRNA upstream 31045 55917315 ~ 55917548 (+) True G275555
TU312834 lncRNA upstream 32460 55915893 ~ 55916133 (+) True G275553
TU312839 lncRNA upstream 33701 55914292 ~ 55914892 (+) True G275554
TU312909 lncRNA downstream 54567 56008439 ~ 56011288 (+) True G275598
TU312988 lncRNA downstream 186382 56140254 ~ 56175231 (+) True LOC110504343
TU313035 lncRNA downstream 259283 56213155 ~ 56213389 (+) True G275716
TU313038 lncRNA downstream 263446 56217318 ~ 56217543 (+) True G275719
TU313039 lncRNA downstream 263781 56217653 ~ 56218376 (+) True G275720
XM_036974673.1 mRNA upstream 473 55942541 ~ 55948120 (+) False si:dkey-57a22.11
XM_036974674.1 mRNA upstream 482 55942307 ~ 55948111 (+) False si:dkey-57a22.11
XM_021597416.2 mRNA upstream 482 55942545 ~ 55948111 (+) True si:dkey-57a22.11
XR_005050118.1 mRNA upstream 13531 55933563 ~ 55935062 (+) True LOC118962850
XM_036974662.1 mRNA upstream 58495 55856319 ~ 55890098 (+) False ankrd44
XM_036964987.1 mRNA downstream 3459 55957331 ~ 55961495 (+) True LOC110504321
XM_021584468.2 mRNA downstream 8923 55962795 ~ 55964012 (+) True LOC110505308
XM_021597420.2 mRNA downstream 12220 55966092 ~ 55968048 (+) False LOC110520248
XM_021597422.2 mRNA downstream 12239 55966111 ~ 55968048 (+) True LOC110520248
XM_021597419.2 mRNA downstream 14317 55968189 ~ 55970943 (+) True LOC110520247
TU312833 other upstream 32460 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 32460 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 32460 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 47850 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 573067 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 1310695 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1835862 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 4098844 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 4098844 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 4333516 60287388 ~ 60290567 (+) True G281141

Expression Profile