RNA id: XM_036964471.1



Basic Information


Item Value
RNA id XM_036964471.1
length 734
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC110520251
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55983873 ~ 55985477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTCAACTGAGACCACAGGTGGCACGAGCACAAGTTTGGCTGGAAGTATTCCAAAACCTGACCACTGAAACAGTACTGAAACCACCAGGATATAAAAGGACCATGGCTCGCTTAGTCAGTGTTGCAGTGTGATCACATTTACCTAACACAATGGGAAAGATAATCTTCTACGAGGACAAGAACTTCCAGGGTCGCTCCTATGAGTGCAACACCGACTGTGCCGACCTGCACACCCATTTCAGCCACTGTAACTCCATCCAAGTGGAGAGTGGTAGCTGGATGGTCTATGAGCGGCCAAACTACATGGGCTACCAGTACTTCCTGAGAAGAGGCGAGTATCCCGACTACCAGCGCTGGATGGGCTTTAATGATTGCGTGAAATCCTGCCGGATGATCCCTCAAAACCAGGGAGCTCACAAGATGAGAATCTACGAGCGCTCTGACTTTGGCGGTCAGATGCTGGAGTTTGCCGATGACTGCCCCTCACTCTACGATCGATTCCATTACAATGATATCAACTCTTGCAATGTTATGGAGGGGTATTGGCTTTTCTATGAGCATCCCAACTACAGAGGCAGGCAGTATCTCCTGAGGCCTGGCGAGTACAGGAGATACAGTGACTGGGGAGCCATCAATTCCAAGATTGGCTCCATCAGACGTGTTGTTGCTCACCCAAACTGAGAGGCAATACATGAAACTGAGCCTAACATTGAAATTAATAAAAGTTAGGTCCA

Function


GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU313919 lncRNA downstream 6200 55977460 ~ 55977673 (-) True G276518
TU313897 lncRNA downstream 39714 55943419 ~ 55944159 (-) True G276497
TU313818 lncRNA downstream 46851 55936617 ~ 55937022 (-) True G276420
TU313832 lncRNA downstream 49743 55933836 ~ 55934130 (-) True G276434
TU313828 lncRNA downstream 60014 55920534 ~ 55923859 (-) True LOC110520241
TU314075 lncRNA upstream 195281 56180758 ~ 56181147 (-) True G276661
TU314078 lncRNA upstream 200675 56186152 ~ 56186362 (-) True G276664
TU314090 lncRNA upstream 214696 56200173 ~ 56200414 (-) True G276675
TU314105 lncRNA upstream 231761 56217238 ~ 56217453 (-) True G276689
TU314155 lncRNA upstream 286874 56272351 ~ 56361440 (-) True G276722
XM_036974653.1 mRNA downstream 59990 55890382 ~ 55923883 (-) False LOC110520241
XM_021597424.2 mRNA upstream 1626 55987103 ~ 55988048 (-) True LOC110520250
XM_021584491.2 mRNA upstream 12289 55997766 ~ 55999047 (-) False LOC110505323
XM_036964483.1 mRNA upstream 12291 55997768 ~ 55999561 (-) True LOC110505323
XM_021597427.1 mRNA upstream 18355 56003832 ~ 56004785 (-) True LOC110520252
XM_021597426.2 mRNA upstream 31783 56017260 ~ 56018372 (-) True LOC118936311
TU312498 other downstream 572386 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 572386 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 864661 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1301068 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2732789 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1285305 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1417507 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1598909 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6729098 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 8984072 64969549 ~ 64970755 (-) True G286522

Expression Profile