RNA id: XR_005039902.1


Basic Information

Item Value
RNA id XR_005039902.1
length 1687
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC118944547
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56028101 ~ 56031077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATAACTTGCAGATGATTGTTGACGCATCAACCAGGATTAAGGGGAAGGGCAACTTGGGACTGTTGTTGATTTCATAATCAGTGGCTGTATAGGAGAGTGAGTGTTTTTTCCTCTCAtaggcaatcagcaattagtaCAGGGAGGTGTGCACTTTACCTCTGCTAGGCAATTAACAATTAGTGTTAGTACTTCAGTCTCACATGGTTCCTCAGCAGCCGCTGTAAGCAGCGGTCATGCCAGTAGCAGTCATGTCTGTGAAACTAAGACCGTCGCTGAAACAAAGACTGCTCTCCTAAGTTCTGCAGAGTTCATAGAGAAAGGCTCCACACCACTCACTTGAgcATTACAGACGGTCCCCACCccttggctgcaacccttctaatttGGTGTACTCTGTGcgcacaacccatgtggaatCCGGGTCTCTGGAAGTGTTTGGAACTGCCGATCTGCAGTCAAGAAAGCCAAATTCATTTCAGCCTATGCTGCTCTTCAGCCCCTTGACTTTTGGGCCCTGACAgagacatggatcaccccagagaacactgctgcTCTCTTCATCTGATGATTGTCGAGGTGGTACAGgtgcccttggaGAGTTTCTCAATGAGCTTGATACCTTGAAGATAATTTCCTGATGACGGTTCACTGCTTTTCGTACTGGaccTATCCACTGCCTTCGACACCgggaaccatcagatcctcctctccaccctctcagggctgggtgtctcaggttCTGTACTTTCTTGGCTCACATCCTACTtggcaggccgctcctaccaggtgacatgGAGAGAATCTGTGTTTGCACCACAGACaccactactggtgtcccccagggcttggTTCTAggtgctctcctcttctctctatacaccaagtgaCTTgactctgtcatatcctcacattgTCTcgcctatcattgctatgcggatgacaacTATTTTTCTCCTACCCCCTCCCCCTGACACCAAGAtggcgacacgcatctctgcgtgcGTGGCAGATATCTCGGCTTGATGTTGGCCACCATAACCTTGCCGTGAcactggacaacaccctgttctctgcaaacatcaatgcggtgactcgctcctgcaggctTATGCTCTACAACATCTGCAGAGTATGACCCTAGCTCACACAAGTCCTAATCCAGTTCTGTCAGGACTGACCAAGAGAATCCAAATAGGTCGGATCAGGTTTGCAATGACTGACTTCAATTAGACCCCCTTTCACCCGTAGAGGGGGGTAGGATAGAACTAGTGGGGTTTGACACTCACatcctgttgtaaatcaagggaGAAGATCCAAAATTCACCAAAGGAATGTGCTTTGTCTCAAAATACTTTTTTCCAGCTGAAATTCTAACAAATTCAAAATGGAATATTGGAACAATATTTAGAATGTTGGAAATGGTCAGAGGTGCTCTATAGAACActcattttgttttattttgtgatgtcattaaaggTATTGTCACATCTACTCCCGTTCCACGGCACTCGACGTTGCCGGTTTACTAATCACTGGCTCTGACAAGCATtatgagactcacctggactccatcacatcACTAATTACCTCCCcatatatctgtcactccccagGCAGTATTGACTGTGTTTTGTCTAGATGCTACTCTTGTCTTGTTTGTTCATtatattattaaactcaccaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312909 lncRNA upstream 16813 56008439 ~ 56011288 (+) True G275598
TU312811 lncRNA upstream 78981 55948850 ~ 55949120 (+) True LOC110520246
TU312845 lncRNA upstream 107731 55919833 ~ 55920370 (+) True G275559
TU312842 lncRNA upstream 109517 55918061 ~ 55918584 (+) True G275556
TU312841 lncRNA upstream 110553 55917315 ~ 55917548 (+) True G275555
TU312988 lncRNA downstream 109177 56140254 ~ 56175231 (+) True LOC110504343
TU313035 lncRNA downstream 182078 56213155 ~ 56213389 (+) True G275716
TU313038 lncRNA downstream 186241 56217318 ~ 56217543 (+) True G275719
TU313039 lncRNA downstream 186576 56217653 ~ 56218376 (+) True G275720
TU313041 lncRNA downstream 188566 56219643 ~ 56219856 (+) True G275722
XM_021597423.2 mRNA upstream 46751 55980352 ~ 55981350 (+) True LOC110520249
XM_021584479.2 mRNA upstream 53309 55973695 ~ 55974792 (+) True LOC110505314
XM_021597419.2 mRNA upstream 57158 55968189 ~ 55970943 (+) True LOC110520247
XM_021597420.2 mRNA upstream 60053 55966092 ~ 55968048 (+) False LOC110520248
XM_021597422.2 mRNA upstream 60053 55966111 ~ 55968048 (+) True LOC110520248
XM_021584505.2 mRNA downstream 31258 56062335 ~ 56062973 (+) True LOC110505326
XM_021584518.2 mRNA downstream 46107 56077184 ~ 56079296 (+) True LOC110505333
XM_021583112.1 mRNA downstream 52764 56083841 ~ 56084662 (+) True LOC110504333
XM_021584527.1 mRNA downstream 56542 56087619 ~ 56090975 (+) True LOC110505342
XM_036974675.1 mRNA downstream 108735 56139812 ~ 56289186 (+) False LOC110504343
TU312833 other upstream 111968 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 111968 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 111968 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 127358 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 652575 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 1233490 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1758657 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 4021639 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 4021639 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 4256311 60287388 ~ 60290567 (+) True G281141

Expression Profile