RNA id: XM_036974677.1


Basic Information

Item Value
RNA id XM_036974677.1
length 4384
RNA type mRNA
GC content 0.54
exon number 26
gene id LOC110504343
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56139812 ~ 56289186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCGATAAGAgcgagaaagataaagagagagattgatggagagagtgggagagtgaaCAGATCTATGTAATCAGGGTGTCAGAAAAAAAAGTGCAGGGACATTTTCAGCCTGCTAAGGCTGGGAAAATAATCACATAGGATCTGCAAAGCAACACTCACtagggcagagagagaaacagagagaagagagagagagggacgaaactgaacagagagagtcggtgacagtgagagagacagagagcgagagagagacagagagagaggaagctatATAGCAACAGAGCAAAGGAGAGGAACTAagcaaaagggagagagaggaaaaaagctTAATTAATTCAGgctgaatgggagggagggatgttgcTACCTCTGCCGGGGCTCCAGTGCCTTTGCTGTGCCTCTCTGTGTAGCTGGAGCTGTGTTGTGTAGCTGTGGCTCTGCTCTTTGTAGCTGTAGCTGCCGGTTTGTGTTGTGAGTGGCTCGCTGCTCTGCTCACGGGGGAAGGGAGAGCAACCCATGCCCCGGGCAGCTTGGAACGGACTGCCTATCAACCTATACTGaaggaaggaacacacacacagacagcaaaaCTGCTGGGATGGGCAGAGGTCATTATAGGTCATTGGTGCAGCAGACCTGCTAAGGGACCCTGTGTGGACTGACTGTGGGCTGTGGACATATCACTTCCTACCAGAGATGAGGGGAACAGCTTGAGTCTGACGTCAGAGAGCGGGAAAGACCTAGAGACCTGCCTCTAGCTGGACCTCCATATCACATACTGCCCGTCCTTATCCCCCTTCCCCCACCCCACCATCTCTGGCATCTGTTTCTACCACCACCCCCACTCACTGGGAAGGATTTGGGATGACAGTTAACCTCCTCAGCTCTACCTCACTCCTCTTCACCACCCAGGGATAACCAGCACTAGAACCTCTGTACCCTGAGAGGCACACTACCATCCTCCCTCACCTCCCCCAGCTGGCATCATGATGGGAGATGGAGTTGGGAACTGGGAGTGTCTGAGTCCATCTGAGTTTGGACAGCTGCAGCAGTACAGCGAGTATTCCACCAAGAAGCTCAAGGATGTTCTGGAGGAGTTTCACGGTGAAGGAGTCCTCTCCAAGTACAATCCTGAGCAGAAGCAAGACGTTCTCAACCAACCCATAGACTATGAGGGTTTCCAGCTCTTTATGACCACATACCTGGAGAACGACATCCCTGAGGAGCTGTGTCAGCACCTGTTCACCTCCTTCAAGAGCAAGACAGGGGGCTGCTCTCCTGAGGTGCCCCGCGCTGGAGCAGGACTGCTGGGAATGAATGGGAAGAGCATCCTGACAGCAATGGGCCGGCACACACCAGAGCATTCCATTGTGATGGCCACATGTTCAGGTGCCGTGTCTacctctccctgctcctcccGTTCCTCCTCACAGCACTCTGGGACAGGGGCCCACACACCCGGGGGTTCCTACCACTCACCTGCCTGCACCCAAGCCAAACTCTCCACAGGTAGCAGTAGTAATGCTCTGACCCCCACCCCAGCCAAGTCCCCAGCCTCCCCTCGCCTCTCCCCAGAGAGGATCAGAGCGGAGAAGAGGAGGAGTCCATCACCCCAGAAGGGCTCCCCTTTACTCTCCCCCCAGGTGGTGTTTCTGAAGGACATTGTGTGTTACCTGTCCCTGCTGGAGAGGGGCACACCAGAGGACAAGTTGGAATtCATGTTCCGGCTGTACGACACAGATGGCAATGGAGTACTGGACAGCTCGGAACTGGACCGCATCATCAATCAGATGGTCCACGTGGCAGAGTACCTGGAATGGGACTCTACAGAGCTGCGACCAATCCTGAAGGAGATGATGGAAGAGATAGACTATGACCGGGACGGAACGGTCACCTTGGAGGAGTGGATCAGGGGAGGCCTCACCACCATCCCTCTGCTGGTCCTGCTGGGCATGGAGACGaatgTGCAGGAGGATGGGCAGCATGTGTGGAAATTAAAGCACTTCAACAAGCCAGCCTACTGTAACTACTGCCACACCATGCTGCTGGGAGTCCGCAAGCAGGGCCTCTGCTGCTCTATATGCAAGTACACAGTCCATGAACGCTGTGTGTCCAAAGACATCGCTGCCTGCATCAGCACCTACGCCAAGTCCCGCAGACACACTAATgctaTGCAGCACGTGTGGATGGAGGGAAACTCTCCCACTAAGTGCGACCGCTGTCACAGAAGTATCAAGTGCTACCAGGGCTTAACGGGCCTACACTGTGTGTGGTGTCAGATCACTCTCCATAATAAGTGTGCGTCCAACATGAAACCAGAGTGTGATGGAGGAGCCCTTAGAGACCACACTCTACTCCCATCCTACATCTGCCCTGTAGTCCTGGACCGTCATTCTGTTGTGAAGCGGGGTGAAGGGGACTCCCCGCCCAGCACCAGCCCTGACGACCCGAGTCAGAGCTTCAAATTCACAGGAGACGGACAAGCACTGCAGATCACTCCTCTCCCAGGCACACATCCCCTCCTGGTCCTGGTCAACCCAAAGAGTGGCGGGAGACAAGGGGAGCGGGTATTGAGAAAGTTCCAGTACCTGCTGAACCCCAGACAGGTGTACAGTCTAGACCGAGAGGGACCCATGGTGGGGCTCAACTTCTTCCATGATGTCCCTGATTTCCGGGTGCTGGCATGTGGAGGGGATGGGACAGTGGGATGGATCTTAGACTGTATTGACAAGGCCAACTTCACCAGAGATCCCCCTGTGGCCATTCTCCCTCTGGGCACAGGGAACGACCTGGCAAGATGCCTACGCTGGGGCGGAGGTTATGAAGGAGGCAGTCTTCTGAAGTTCCTGCGGGACATAGAGCACAGCACAGAGATGGTTCTGGACCGATGGAACATCGACATCGTCCCTGTTGacaaggaggagaagggagaccCTGTCCCCAACAGCATCGTCAACAACTACTTCTCCATCGGAGTGGATGCCTCCATCGCTCATCGCTTCCACTTGATGAGAGAGAAGCACCCAGAGAAATTCAACAGCAGAATGAAGAACAAGTTGTGGTACTTTGAGTTTGGCACCACAGAGACCATCTCCGCCACTTGCAAGAAACTCAACGAGTGTATCGAAGTGGAGtgTGATGGTATCATCCTGGACCTCAGCAGCACGTCGTTGGAAGGCATCGCCGTCCTCAACATACCCAGCATGCATGGCGGCTCCAACCTGTGGGGTGAGACCAAGAAGAGGAGGAACTACAGCCGCATGAGCAAGAAGGTTCCAGACAGGATGCCCGCCAGTACCGTCACCGATATAAAGGAGCTCAAATTCTGTGTTCAGGaccTGAGCGACCAGTTGCTAGAGGTGGTGGGTCTGGAGGGCGCCATGGAGATGGGGAAGATCTACTCAGGCCTGAAGAGTGCTGGCCGCAGACTGGCCCAATGTGCTAACGTCACCATCAGGACATCCCGGCTGCTGCCCATGCAGATCGATGGGGAGCCTTGGATGCAGCCCCCATGCACGATCAAGATCACACATAAGAACCAGGTCCCCATGCTACTGGGCCCTCCTCAGAAGACCCCCTTCTTGTTCTTCAAGAGACGCAACAGAAGTCGGGACTATGAGTGAGGAGGACACTTCAAACTCCCCCCTCTTCACAAACACATTCACCAACCCCTCGGGACAACTCAATAGGTCCCACAGACCAAGGCATTGCCCCTTGGACCTACAGTACCACTTCAGAATGAACTGACTTCCTCTCAGTGTAATGACCACTTCCTGTGTATCCATGTTCTAGCTTCTAGAACTTCCTGTGAACTCTGAACTCTGACCCTGCCACTGGCACACTAGCTCAGTCAACCTCAGCTCCAGACTCAGCTTCAGCCCCAGACCCATCAGTAATGCCACACTGCCTTGGCAAAACACAGTGCCAGCAGCATATAGGTTCATCTAGGATACTGCCTTGGATCTcaaatggagggatagagagatggagtgataaGGAaacacataaagagagagagagacaaagagagaagcaGCAGAAGGGGAATGGGAAGAGAAGAGTAGAagaaaagaaagagcgagagcaaGGGATGGGATGATTGACATACAGCAGATGAAAGTAGTAtggctgtgttgtgtgtgtgcgtgcgtgcgtgtgtgtgcgtgtgtgtgtgtgcacgtgtgtgtatgtgcgtgcgtgtgtgcaagttctctctctctttgaggaGCCTGTTGAATAATGGATCAGAGCTTGTAGAGTATTCACTCCAGTGTCTCTCCACGGCACAGAACACTGCACTGCCTGAGAGATGAAACGGAAAGAGATCATCTATTATTGACTGCTTCGTTTACGCTTGACGGTGGCAGCAGGGCAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312909 lncRNA upstream 128524 56008439 ~ 56011288 (+) True G275598
TU312811 lncRNA upstream 190692 55948850 ~ 55949120 (+) True LOC110520246
TU312845 lncRNA upstream 219442 55919833 ~ 55920370 (+) True G275559
TU312842 lncRNA upstream 221228 55918061 ~ 55918584 (+) True G275556
TU312841 lncRNA upstream 222264 55917315 ~ 55917548 (+) True G275555
TU312987 lncRNA downstream 3663 56292849 ~ 56295217 (+) True G275673
TU313100 lncRNA downstream 19121 56308307 ~ 56309663 (+) True G275776
TU313174 lncRNA downstream 134827 56424013 ~ 56424916 (+) True G275846
TU313191 lncRNA downstream 158410 56447596 ~ 56447865 (+) True G275860
TU313194 lncRNA downstream 162691 56451877 ~ 56452654 (+) True G275863
XM_021584527.1 mRNA upstream 48837 56087619 ~ 56090975 (+) True LOC110505342
XM_021583112.1 mRNA upstream 55150 56083841 ~ 56084662 (+) True LOC110504333
XM_021584518.2 mRNA upstream 60516 56077184 ~ 56079296 (+) True LOC110505333
XM_021584505.2 mRNA upstream 76839 56062335 ~ 56062973 (+) True LOC110505326
XR_005039901.1 mRNA upstream 108735 56028104 ~ 56031077 (+) True LOC118944547
XM_021597432.2 mRNA downstream 14240 56303426 ~ 56320718 (+) False etv5a
XM_021597433.2 mRNA downstream 14240 56303426 ~ 56320718 (+) True etv5a
XM_036974690.1 mRNA downstream 35816 56325002 ~ 56329352 (+) False LOC118936648
XM_036974694.1 mRNA downstream 35828 56325014 ~ 56329352 (+) False LOC118936648
XM_036974678.1 mRNA downstream 35832 56325018 ~ 56329352 (+) False LOC118936648
TU312833 other upstream 223679 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 223679 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 223679 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 239069 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 764286 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 975381 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1500548 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 3763530 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 3763530 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 3998202 60287388 ~ 60290567 (+) True G281141

Expression Profile