RNA id: XM_021597433.2


Basic Information

Item Value
RNA id XM_021597433.2
length 4520
RNA type mRNA
GC content 0.47
exon number 13
gene id etv5a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56303426 ~ 56320718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTAACCGTCCATTAACTATAGGCTCAGTCAAGTTTTGGGAGTCGGACGGACTGCATAAATTGATCACTAAACGGAGACAGACGACGTTAGTGTCTtttgtggattttttttattGCATTCTTTCCATACTGTAACGGAATTGAAACACGCACAGGTTGAACAGCTAGTACATAAAGTGACCCTCGCGCTATCGCTTTAAAGCGAATACCTTTTTCTGGGAACCTTTGGAGACCCAGATAACATGGACCGATTCTACGACCAGCAAGTCCCATTTATGGTCCCACCCAATCAGAAATCTCATGTGGAGGAACCATACAGCAGACCAGTCATCGACAACAGGAAAAGGAAGTTTGTAGACACAGAACTCGCCCAGGACACGGAAGACCTGTTCCAAGACCTCAGCCAGTTACAGGAGATTTGGATTGCAGAAGcccAGGTACCTGATGACGAACAGTTTGTCCCAGATTTCCAGTCTGATAGCTtgATGTTTCATGGCCCCCCACAAACCAAGATTAAACGGGAACTGAGTCCTTCCAAAGAGCTTTCTCCTTGTGGCCAGGACAGGAGTCTCATGCCGTACGGAGAGAAGTGCCTTTACAGCTACAGTGCCTATGAGAGGAAACCCAGTTTGGGCTACAAGCCATTGACCCCTCCCTCTACACCTGTGTCACTGTGCAGCTCTACCAACACCCCAGGGACACACCCACTCAGTGAGCAGACTCCTCCCCCTCAAATACCCAATCAGAACCAGGTGCTTGGGCCACATCCACTGCAGCACGGGCAGTCTGGCAACCAAGCAGTTGGCTCCGCCCACAGCCAGCAGAGGCCGCTCTCCCTCCACAGCCAGAGCCCGCCCTTCGCAGTGCCCTGCCCACCCTCACACCACAGTCAGGATGGCACCTACAGCCCTGAGCACAGGTTCCAGAGGCAGATGTCGGAGCCatgtctccccttccctccctctgagAGCCAGGATCGCCCCCAGTTCCTAGCCCAGCAGCAGGCCCCCAGCCACAGCACCCTGCCCAGGGATGGGAGGCCCCCCTACCACCGCCAGATGTCTGAGCCCCTGGTCCCTGGTCTACATGGCTTCAAGCAAGAGCTGCTGGACCCCCGCTACACCGAGGAGGGTGTCCCCTCCATGGGCTCTCAGGGTGCCTTCCACCCCATGGCCATCAAACAGGAGCCCCGGGACTTCTGCTTCGACTCTGAAGTGCCTATCTGTCAGTCTACATTTGGAAGAGCAGGGACCTTCTACCAAAACAACCATGAAAGTTTCTCCTTCAGAGAGCTTCACCTGTACTACGACGATACCTGTGTGGTTCCTGACAGACTTGAAGGGAAGGTCAAGCAGGAGCCCTCGGTGTACCGTGACTGCCCTCCATACCAGCGTCGCGGCTCTCTGCAGCTCTGGCAGTTCCTGGTCACCCTATTGGACGACCCGGCCAACGGTCACTTCATCGCCTGGACAGGCCGGGGCATGGAGTTCAAACTCATAGAGCCTGAAGAGGTGGCTCGCCGCTGGGGCATCCAGAAGAACAGGCCAGCCATGAACTATGACAAGCTGAGTCGTTCTCTGCGATACTACTACGAGAAGGGCATCATGCAGAAGGTTGCTGGTGAGAGGTACGTGTACAAGTTTGTGTGTGACCCTGAGGCCCTGTTCTCCATGGCCTTCCCTGACAACCAAAGGCCCAACCTGAAGGCCGACCCAGACAGTCTGCCCTATGGTCAGGTGGACGACGACACCCTGCCTCTCACCCACTACGACAAGAACACCCCTTACCTGGGGGATTCTggggagcagtgtgtaggaggcCTACCCTTCCCTGACGGCTACGGCTACTGACACGCACTTCCCCTACTACTAAACCCAACCCAGAGATCAAACGGCTGAGGCGGAGCAAGAAACTATCAAACCCGAAaccttcctctcctcttaccGCTAAATTACTCCTCCAATCTTACAGATTAATttaaccctccctccccctgaAAACGACTGAGGAGAAACCTGCACCAACCACCATCTCTGGCATCATCTACTATACCAAGAGAGGGGGGGGCCATGGAAGTGTGGAATGGACTCCAGTGGTTCCGCCAACTTAAGGCGAGGTGGCGTTGTTGCAATGGAGACCAAGAGGACGTGATGGCGGGCCAGGGGCTGCATTATGATGACAACATGCAGGAGGACTGTCTGATAGGTCTCTCTGCGCAGACTGCAAGAATTGTACCAATTCTGATTGACAATCTGCTTTTTCTAAAAGAGTATAATAAGTATCTTAAGTTAATTCtgacaaaatatataaatgcagCACTATTCTATAGTTGCCTTTTTCGTCCCCCATAATTATATATTTTCTGCCACATATGAACAATAAGATCTGTGTAAGCAAGGACTTTAATTTGCAAAAAAACTCCAGACCTATTTGTTTCTGTAGGCTTAAACGTTAGTGTAGAAATGTCTGTTAGTATGCTGGCTTTTCTACAGTTGGTTAAAGATCTAGACCTAGTAGTGCTCTAACCCACTGGGACATTCTATGGTTTCAGATTAGATGGATGGATTCCTCCAACCAGAGGCCTACGTTTTGTTTGTTTAATGCCGGCCCGGCTATATTTTTATCCAGTAATTATTTAGTGTTTGTTCTGTTCTGCTGGGTTACCTGTGAGTGCCCTACTAGCGTAAAACTCCAGGCTCTCAGCTGTGGCTGCATCTGAAACAGCACGATTCCctatatatagagcactactttacaAAGCCCACCAGTCTATGGTCAAAAGAATTGCAGTATAAAGGAAATGGGGTGAATGTTGGATGCGGACTCGGGGCGACCAGACATTCTCCTTTATAATGATACTccacaccatttttttttttttcttcataaacTCACTCCTTATATTGCCTCAGTTGTAACTGACTGACTAATTAGCACTCCACCTCCTTAAATAAAAACTAGGCACTGCAGGAATCCTTTTTCTTTTCCAAAAGGGACACCTCAGTCAATTTTTCCTAGAGATTTTGAATTTATACATGCCTAAAGTTATTAAAAAGGTGAaatcttatttttattttattgggtGCTTGACGTTTCCTCAGCAGTGAGTGTACTATATTTCTCAGATGCACTAGGATGGCATTGTTCAGGACTTTGCATGCGAAGGGGTGAAATTCTACACCGTTCCCTGGACTCCTTTCTGCCAATCACAGGTTGTCAACAAGAGACCTCTGCTTCTCTTTGCATGACGGTGTATTCAAACAAATAAACTGTCCACTAACATATCGCTTTACTCTACTCTGGACAAAGAAGCAGATTGTGAAACTTCTCtgcattttgttcatgttttGTTTCTTAAATGGGGAAAAATACAaacttatataaatatatatttttgctaaGTCTGCAACTGTTTTGATTTTATTGTATAAGCCTGTATAGTTCTGCCTATAACAACATATGCATCTTAAATATATATCAGGATCCCTGTGACTCGACTATTACTGCAGACAGTTTGCTTTAGAGGCCGTTTTTGGTGAATGAAATGGTGAAGAACAAGAATATTGTCTTATTTATAAAGGGTAGTATGGCTGGGGTTCATACAGTGTGTCtgcattccaaatgacaccctactacctatatagtgaactactttttgaccggagccctattgtccctggtcaaaagtagtttacTATATACATTGAGTTTACAAAGCATTAAGAACACCTATTGAGTTgcgccccctccccctccacaaggtgtcaagtgttccacagggatgctgccccttgttgactccaaagcttcccatagttgtcaagttgtctggatgtcctttggatggtgaaccattcttgatacacatgggaaactgatTGTGAAAAATAACTAACGCTGCAGTtgacaaaccggtgcgcctggcacctactatacCCCGTTCGAAGGCACTtcaatatgttgtcttgcccattcacccactgaatggcacatacacaatccatgtctcaattgtttaaAAAGGTTAAAGGATTTTtttactggggcggcaggtagcctagtggtttgagcgttggacttaaccgaaaggttgctagatcgaatccccgagctgacaaggtaaaaacctgtcgttctgcccctgaacaaggcagttaacacactgttcctaggctgtcattgaaaataagaatttgctcttaactgacttgcttagttaaataaaggttaacaataaatctacactgatttgaagtggatttaacaagtgatctCAATAagcgatcatagctttcacctggtcagtctgtcatgaggTATTCATAacgttttgtacattcagtgtagtGAAAAGGGTGTCATTTCAGATGAAGAGATGTGTGTATCTACCTATAGTCTTCCCTGACCAAGGGTTGTCTGCACTTGTATAGGCTTCACCTCTCCCTCTTCACAACGTGTACCTTACACTGAGTTTATAATGATCTGTACTGGGTACAATAAAATGTCCTTTCTGCTTCA

Function

GO: NA

KEGG:

id description
K15593 ETV5; ets translocation variant 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312987 lncRNA upstream 8209 56292849 ~ 56295217 (+) True G275673
TU313041 lncRNA upstream 83570 56219643 ~ 56219856 (+) True G275722
TU313039 lncRNA upstream 85050 56217653 ~ 56218376 (+) True G275720
TU313038 lncRNA upstream 85883 56217318 ~ 56217543 (+) True G275719
TU313035 lncRNA upstream 90037 56213155 ~ 56213389 (+) True G275716
TU313174 lncRNA downstream 103295 56424013 ~ 56424916 (+) True G275846
TU313191 lncRNA downstream 126878 56447596 ~ 56447865 (+) True G275860
TU313194 lncRNA downstream 131159 56451877 ~ 56452654 (+) True G275863
TU313201 lncRNA downstream 155650 56476368 ~ 56477171 (+) True G275870
TU313202 lncRNA downstream 157209 56477927 ~ 56478418 (+) True G275871
XM_036974675.1 mRNA upstream 14240 56139812 ~ 56289186 (+) False LOC110504343
XM_036974676.1 mRNA upstream 14240 56139812 ~ 56289186 (+) False LOC110504343
XM_036974677.1 mRNA upstream 14240 56139812 ~ 56289186 (+) False LOC110504343
XM_021584527.1 mRNA upstream 212451 56087619 ~ 56090975 (+) True LOC110505342
XM_021583112.1 mRNA upstream 218764 56083841 ~ 56084662 (+) True LOC110504333
XM_036974690.1 mRNA downstream 4284 56325002 ~ 56329352 (+) False LOC118936648
XM_036974694.1 mRNA downstream 4296 56325014 ~ 56329352 (+) False LOC118936648
XM_036974678.1 mRNA downstream 4300 56325018 ~ 56329352 (+) False LOC118936648
XM_036974684.1 mRNA downstream 4312 56325030 ~ 56329352 (+) True LOC118936648
XM_021597437.2 mRNA downstream 8593 56329311 ~ 56336070 (+) True LOC110520256
TU312833 other upstream 387293 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 387293 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 387293 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 402683 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 927900 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 943849 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1469016 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 3731998 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 3731998 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 3966670 60287388 ~ 60290567 (+) True G281141

Expression Profile