RNA id: XM_036974741.1


Basic Information

Item Value
RNA id XM_036974741.1
length 8412
RNA type mRNA
GC content 0.51
exon number 34
gene id rif1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56463388 ~ 56494844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGTACTAGTTTCGCGCCAGCGTTTTCGCGGGGAGAGGAAACTACActgggagagtcagagagaaagaaaatacgTAAACTATTTGCTGAAATAAGATAATATCGCGTATACTTGCAGTATATTATTGGCGTTGATGGTATCATTTTCTTTGATCGTTTGTGTTCTTTCAGGAATTGCAAGGGTTTGAGTGAGGAACCAGGATGATGGCGATGGTGCCTCCTACCAGCTCAGGTTTCCTTCCTCTGCTGGAATCTCTGGAGGATAGCACAGCTGGACAACCGGAGCAGACCGAAGCCTACCTCACTATTGCCAATCGTCTCAGTGGAGATGATGAAACACAATTCCTCCCTGCAGTAGTAAAGCACTTTCCACGTTTGGGTAAAACTTTCCAGACCCATATCTCCAGTCAGAATGCAGAGCTGAGCCAAGCTGCCCTGCAGGCCCTGGGGTTCTGTGTGTTTCATGTCCACGTTGTCTCTGCTATCTCAGCTAATTTTGCAGAGGAGATATTGTCAGCACTTTCCTCTCTGGTGGTGAAGTCCACAGACAAGAACACATGCACACGAGCATTATGGGTAATTTCCAAACAGAACTTCCCTACAGAGGTGGTGGCCAAGAAGGTTCCAGAGATCCTGGGGGCCCTGGAGTGTGTGCGGACGAGAGAAGACATCCAGTCTGTAGTTATGGAGCACGAGTCTCTGAATGTTGTCATAAGTTTGTTGGAGCAGGCCTCGGCCCAGATGGGTGAGGATGCAGTACAGTGGGCCAAGCTGGTCATCCCCCTGGTGGTCCACTCTGCCTCTAAGGTGCGCCTGCGGGCGGCAGCAGCCCTGGAGATGGGCCTGCCTCTACTTCTGGAGAAACAGAAGGAGGTGGCTGCCATCGTAGAACCTCTCATGTCCTCAAAACTCATCCCAGAGCTCCAGAAACTGTTCTCCACGAAGAACGAGACCAACGTGCTGAAACTCTGGCCGTTGTTTGTCAGGCTCCTGGGGAAGCTGCTCCATAGAGGTGGTCCCTTCATCAACTCCCTGCTTGGCCTGGAGGAACTGGGCTTCCGTAGCTCCTCCCCAAACATCAAGAAGACCGCCTTCATCGCTTGGAAGAGCCTGATTGACAATTTCGCACTCAACCCAGAGATCCTGTGCAGTGCCAAGCGTCTAAAGTTGCTGCTGCAGCCCCTCAGCTCCATCCAGGTGAGGACTGAGGCCCTGCTGCTCACCAAGCTGGAGGTCTGGTGGTACCTGGTGGTCAAACTGGGAGCCAACCTGCCCGCACATTTTGAACAGGTTGGTGTTCCTCTCCTCCAGTGCACCCTGGGCCCAGACTCGGCCCTGCCAGCCACTCCTTCCAGGAGCTCCAGCCAGTGCAGTGCTGTGGGGACCACTACTCCTAAATCTGGTTCCCCAGCGTTCTCTGGCACTATGGTGCCCCGTCTGAACCTAAACACCAGTGTGGTGGTGGCCCAAGCCTACCCCTCCATCCAGCTGCTGGGACTAGAGATGTTGTTGCACTACTTCCTGGGGTCAGAAGTCACAACCGCCGCAGCCAAGAACAAGCTGACGCTCAGCCTGGAACCTATTTCTCACCCCTTCCTGTCCAGCCCCTTCTCCTTCACCAAGCACGCCCCTCTGCTGATCACTGCTGTGCACGACAGCTTCATCTGCATCGGCAAAGACGCCCCAgATGCCTTGCTTTCCCTTATATGGAAGAACCTCGTCAGTTTCGTAAGCACAACGATTGATGCTGGCAATAAGAAGGAAAGGCAAGGCTCTGAGGTGCTGACCTTGCTGCTACAGGCTCTACAGAGCATCATCTCCTCAGAGGCCCTCCCTGCAAACAGGGCTCTGAGTCTGCTGGAATTGACAGTGAAGGGTATCCCTCAGAGAGTACTGGGATCTGCCTCTTACCAAGTGGGCAAAATGGATGTACTGAATGGAACCCCAGCTCTGTTCTTGATTCTCCTGTTCTACAACCACAGTCTGGTGGCAGGCTTCGTAGAGGATGAGAGgttcttCCTGTGTTTGGAGACACTGGTGAGCTGTGGTCTGTCCGGCCCCACGTCCCCCCTGGCATTTGGGGAGGCGGTCCTGGCGGCGGTTGGGCACTGCGCGGGGACTCTGGAGAACAAAGAACAGCTTTGGAGGATGTGGAGCCTGGTGGTCAACCCGCTGACTGACACCATCACACAGACCAATGAGGTGAACCAAGGGGATGCTCTGGAGCACAACTTCAGTGCTGTGCTCACTGCCCTGATGTTCCCCATCATACACCTGCTACCTGGCAAGGTTCTGCCACAGATGACTCAGAAGGCCTTGCTGGGTACGTGGTGCAGGCTGTATAAGGTGTTTGCCCGCTGCTCTGCCCTGGTGGCCACCGCCGAGGAGAACGTCTGCTGTGAGGAGCTGTGTGTCAAGATGGCTGCCATATTGGACAGAAAGGCTCTGAAGGTTCCAGCAACGTTGCATGCGGTTGCTAACATCCTCCTGGTCATCGCTGAGAGTGCAGACTTCTCTCCCTACACACCACAGTTCCAGCAGAAGATGAAATCTCCCCACACCCATCTAACCTGGGTGCGTAAGAAAAGCAAGGCCCTGGGGAACCTGGATACCTTCCAGACCCTGCTGGTTCAATCCCTTGAGACCTTCAATGCACTGGAGGCCCCTGAGACGGCCCCTAATGGTACAGGCCTTGCCCTGGTCTCCATCCTCTCTATCTTGTTCTCTAATCTGTCTCTGGGTACAGCCATCCAGGAGGCCCTGGCCTCTCTCTCACATCCCCTCGTAGCCCTCTATGAACAGGCTGGGAGGACTCCAAATGAGCAGCGCAAATGTACCTCAAGTCTTGGAGCAAAGCTGGAGAAGCTCCTGAGTGATGTCTTGGGGTGCCTGCAGATCCGTTCAGCCCTGGCCTATGATGATGAGCTGCTCTCCCTGCTGTCCCCCTTGCTCTGTGTCCTGTTCCTCCATCGGCGCAAGCAGGTCCGCTCCTTAGCTACACAGTTCTGGAATGCAACCTTCGCCAACACTCTGGTCCTCGTCTATCCAGAGGAACTCAAGCCGGTGTTGAGCCAGGTGAAGCAGAACACTCCTATCATTCTACCTGGATTTCAGTCTGTTGAAGTTCCAGATGAACTCAGTGGACAGTCCTCGAGTGAGAGCTCTCAGCTGGAGACCAAACTGAGTGGAGTACAGGTCACTTCTGGGGTGAAGAGGGATTCTCTACTGCCCAGGGCTGAGGAGATAAAGGACAGGACCTCCAAGACCTCTACCAAGCCCGTCTCTACAAAACTTGACTTTGGTTCTCACAAGCTGCCTCGTAGAGAGGAACTGGAGGAGCAGGCCTCGATAGACTTTGTGTTCATCCCCCCTGAGACCAAGGAGAGAGTTCTCACTGAGCACCAGAAAGAGGTCAAGAGAACCAAAAGGGTTGACATCCCTGCCATGTACAACAACCTGGATGCTTCCCTTGATACCACAGTCTTCACCCAGTACACACAGAGTCAGGAGGAATCACTGGACAAATTACCAGCAGATGAGCAAGCCGAAGATGCAGCTAAAGATGAGGGTAAAGCAGAGGGTAACGTGGAACGGGATGAAGCTTCTGAGGTTTTGGCAAAAGACACCCAGGAATATATCAGTCCAACCAATGAGATGGCAGAACCGGCAATGGAAGAGGAGCCTCCTGAGGAAGTACTTCCTGAGTCTGTAGACGTTTCCATGGAGGATGCCAACGAAGATGTTCCATTGGAGGACTCCGATGTTGCCATGGAGTCTAGAGAAGAGGGCACCAGCCCAATTGTTTCTGGCGGCTCTGATATCATCTCGGGGACACCTAAGAAACACAACAGTCGTCGCCAGTCCTTCATCACTCTGGAGAAGTATGCTGAGGGGAAGCCTGCTAGTCCTGCCAACGTGGTGAAGTTTACAGGCCCCCTCACCAGGACCTTGAACAGCCAGGAGCAGGAGCCTGCCTCTCAGAAACCATCGGAAGAGATTGAGGCTGACACAGACCGACAGGACTCCCAGGAGACTGAACAAGTAAGACACAAAAGCTCCAGGAACGAGTCTTTCctaaaggaggaagaggaacacGAATCTTCAGAAAACAAAAAGGAATCTGAAGTTGAGATAATCGCTGAGAAACAGTCAAGTGAAACCACAGAGGACGATGTCATCCCAGACACCCAGACTCAGGTGGAAGTACTGAAGGAAGTTCCAGTTCCTGCAGTTGAAGAAGTAATGGGAAACAACAGTCAGGAAGAAGAGGAATCTAAAGGTCTTTTGGAAGATTATACCAGCTCCCAGTCCACTCTGAGCCAAGGTGAACCAAGGCGGTCCGGACGGCGGAGGAGTAGGCCGCTGAGACCAGGAGAGGACACAGAGGAACGAGATGATCTAGACAAACAGAGGAAGAAGTCTCAACCTGGAGAGGATGTGAGTCAAACTGATTCACCAAAGACTACTCCCTCTCCTGCCAGTCCAACTGATAGTCAGTCACAAGGTAGAGCCAGTAGGAGAAGTAAGCTGGCTGTTGAGGAGGATGGTGGAAAAGACAAGCTGAGAAAGAGAAGTCACAAGGAAGTGAGTGAATTGAGTCAATCAAATTCACAGGTTGCCAAACCTTCACCTGCTGGTGATAGCAACAGCCTATCACAGGGTTGGAGGAGCAACAAATTGGTCAGGGAATCAGAAGAGCTGGTAAAAGACAAACGGAAGAGGAGAGGTGTTGCAAAGGAAGAGCTCAGTCAAAGTGACTCCCTAACGGTCACTGCCTCTGATAATGATAGCCAATCACAGAGTAGACGTAGTCAGAGGAGTAAGCTGGCTGTGGAAGTAGAGGATGATGGCAATCAGAAACAAAAGGGTGGTAGGGCTCAGAAGGAGAAGCGAAGTCAAACAGATTCACATGTAGCCAAACCATCTCAACTAGAGAGTCAGTCCCAGGGTAGAACAAGCAGGAGCAAGGCCGTCAGTGATTCGGAGGAGTTTGATCTCCCAGACAAGGTTGAAAAGCAGGATCCTACTGAGGAGGAGCAAAGCCAACGTGATTCTCAGATGGCCACACGATCTCCTGCTGCTCAAACAGGAGATGAACATTCACAGGGTATATCAAGCGGGAGGAGTAAATTGGTCACACAGTCCGAAGAACAGGGTAAAGACAAACAGAGAAGAGTTGGCACGGAAAACACACTCTGTCAAATTGACTCAAAGATCACCACACCTTCAGCCACTCCAAAATATAGCCAGTCACAGGGTAGAGCAAGCAGGAAAAGCAAGGTGCCCCTTGAAGTGGCTGAGTTGGAGGACAAAACAAGTCCAAATGTGGCCACTGATTCAGCAGCAGCACCCGAGATGAGCCAGACTGATTCTCAGGTCACTCCTTCCGCCACCAGACAAACAGACAGCCAGCCGAGGCCCAGAGGCAGATCCAGTAAGAGAAGCAAGTTAGAGGAACAGTTGAAGGCCAGCAGCAGCCCTATGCCAACCCCTACCATAGAGACTCATAGCTCCCAGGTGGCAGACCAGGCTGGAACACAGGAATCCCCCCAAGGAAGCAGAAGGACTACGAGACGGAGAGCTTCTCAGGGCTTACTGTCCTCCAACGTGGAGGAGTCAGACACTTCAGAGACCCGGGAGGATGCCCAGAAACCCAAGAAGAGAGGCAGGAATCCCAAATCCACCGAAGCTCTTCAAAGCCCACTTGCTACTGTTGGATCAGGAGAGCCAGGGGCTTACCTAGAGATCCCAATGGATCTTTCTGAATCTTCTCTAAAGTCTGAATCAGACTTGCAAAACCCATTGAGTGAGGCCTTAGAAGTTAAGATTCCTCAGGATGTGGATGAAACCATTAAAAGTATCAACTCCCTTAAACCTGTTATGGATGTTCTGAAACTTCCTCTGATAACAAAGAACAATATGGGGCAAAGGGAGGATAACACTGAGATTGTAGATATAGAGGGTGAGTGTGAGAATACCAAGCTGCCTTCTCAGTTGATCAACTCTTCGTTCAAATCTGATCTAGAACAACTTAAGAGTCAGCATTTTTGCATATCCCCACGGAAGAACCTCAAAACAGTCTCTTCTCAGGAGGGTGTTCATAGTGACTTTGGGTGTGAAGGGCCAACACAGCTCCAAAATAAGCTCCTCACTGACTCTGAGCAGGCCAACTCTCCAGTGCCTTCCGCTGATGGAAAGTCATTCTCAGGATATGAAAGTGTATTACTTGAACCAAACAAACTATGCACCCCTCCCATCTCCATTGGTCTCCCCACAGATACTTCACCCAGCGAAGCTGCAGAGGAGAAGCTGAGCCTGAGTCTTCAGGTTGCTGAGTCTTCAGGGGAGAAGCTTGTAGATGTGCCGAAGCCTGTGACTGTGTCCAGTGAGGAGGTGACAGAGGAGCAGATGGGAGAAGACAAGGAGAACCGACATCCAGAGTCTACTAACAATGTTCTAGAGGAGGACCAACCAGAAGAGGATGTTTTCATGTCTATTGTGCATACCCAACCAGAGGGTTTCAATGGCTTAGATGAGGAGCAACAGGAGGAGCAGTACACATGTATTAAAGAAGGCCAGCCAGAATCTGACAACACCTCTACTAGGACCAGAGAAAATGACACAGAGCCTCAGGCAAACGACGTTCAAGATATCACTCCTCTCCAAGAGAGGGCAAAAATGGATACGGTTCCAAGTCTTGAGTGTGAAGAAGAGGACGGTGAAGAAACTCAGCTAGACAATAATGACCTAGCTCTACATCCTCTAGACTCTGTTGCCCCTCTGACCTTCGACACTTGCGAAGCACCAGTGCCTCTACATCATCCAAGTACTTCTAAAGACGTGTTGTGCCAAGACTCGCCTCCCAAGCAGAAGGGTTTGGAGGCTATGATGGGTTTGGAGGTGGGCCAGAGCCCCAGCAGTGGCAGGATTAGGGGAATGTGGACTCCCTCagcctccccctccacctctatactgAAGAAGGGACAGAAAAGACCAATAGAAGAGGAGAGTTCTTCACCTTTCACTAAGTCTCGACGAGTATCATTTGCCGACCCAATCCAACACCAGGAGCTGGCAGATGACATTGACCGTCGCAGCCCTATCATCCGATCCAGCTCCCCAAGAGCCAAAACTGCCAGCAGTAGCATCACTCAGCCTAAGTATATCACAACACCAACAAAGGGCCTAATGATCCTTAGTCCACGCAATCTCCGCAGCCCGGGGTACAAGAGCTCCAAGAAATGCCTGATCTCAGAGATGAGCCGGGAGCCGAGGCCCATCCCTAAGGACTGTGTGTACCCGGCCCTGGTCAGCTGTTCTACGCCTGTGGAGGCGGTACTGCCTCAGATCACCTCCAATATGTGGCCTCGTGGTTTTGGTCATCTTGTGCGTGCCCGTAATATCAAAACGGTTGGAGACCTCAGTGCTCTCACACCCAGCGAAATCAAGAACCTTCCCATTCGCTCCCCAAAGATCTCGAATGTGAAGACAGCACTTAAAACATACCACGAACAGCAGCGGAAGGGCCGTAGTGATGAGTTGAAGAGTTTTGAAGAGATGGAgaacatgacatcagagctggagGAGCCAACCCTTCCTCAGAAccaggaagaggaggacaagaCTCCTGGAGAGGCCCTCGCCACAGAGATGTTGGATGAGCCAGTGTCCATGGAGCAGGGTCCAGAGGAGAGGCTGGACCAGAGCAGGCCTGACCACCAGAGGCCTGAGGGGGATCTTCTGTTGGAGGTGGAGTCCCTGGGAGCTCGTCTAGCTGGGGAGGAACTGAGCCGCTGCTCCCCTGACCAGCTTGTTCAGCTCCATGATCAGCTGGGAGGGATGATGAAGAATGTAGTGGTGCAGCTGCAGAGCAGACTACTTTCTCACAACAAGGACAGCGGACCCTGATCCAAACGGTCTACGGGGTTTGGATTGCATATCTTGGGAATGCCCGACAATTGAGGGTGCCTATTGACATTTGTGGAGGGCGGAACGTTGGTGTTTTTAGAGATCTTATAGAGCTTTTTTTATATATGGGTGGCCAGGCCCCTCAGCCCCCATGGACTTCAAACCTGAACACTCCAATCACTGTTTTTCCTATTACACTCTTAACAGTTAATCAGGACTGTGCTACATGTTTTTAACTCCTGTTGTCTTTGGCCTTTGTCCATGTCCTCTGATAGGTGAGGGAGGTATTTTATAAATGCTCACTGCTTTACTTTTCTTTTTAGCCTGAAAGGttgggtgatgatgatgattaacTGTTGCTATGGTACGAGTGAAAGGGAAGCACGGTCTCTGATTGGCTGTTCCAAGACTTTGCCATGAATTTACTTTTTAGCAATAAATACTGGCTAGGAAGGTGGCACCTTTTTACATTTTGCGTTCTTAAATAAAGGATGAGAACTTGA

Function

GO: NA

KEGG:

id description
K11138 RIF1; telomere-associated protein RIF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313194 lncRNA upstream 10734 56451877 ~ 56452654 (+) True G275863
TU313191 lncRNA upstream 15523 56447596 ~ 56447865 (+) True G275860
TU313174 lncRNA upstream 38472 56424013 ~ 56424916 (+) True G275846
TU313100 lncRNA upstream 153725 56308307 ~ 56309663 (+) True G275776
TU312987 lncRNA upstream 168171 56292849 ~ 56295217 (+) True G275673
TU313218 lncRNA downstream 5368 56500212 ~ 56509613 (+) True G275875
TU313224 lncRNA downstream 26497 56521341 ~ 56523190 (+) True G275881
TU313241 lncRNA downstream 51953 56546797 ~ 56551723 (+) False G275894
TU313248 lncRNA downstream 51953 56546797 ~ 56551723 (+) True G275894
TU313262 lncRNA downstream 55906 56550750 ~ 56552245 (+) True G275903
XM_021597439.2 mRNA upstream 592 56454004 ~ 56462796 (+) True tnfaip6
XR_002470740.2 mRNA upstream 22439 56439866 ~ 56440949 (+) True LOC110505355
XM_036974695.1 mRNA upstream 28462 56338028 ~ 56434926 (+) True itgb5
XM_021597437.2 mRNA upstream 127318 56329311 ~ 56336070 (+) True LOC110520256
XM_036974684.1 mRNA upstream 134036 56325030 ~ 56329352 (+) True LOC118936648
XM_021597449.2 mRNA downstream 173289 56668133 ~ 56680567 (+) True LOC110520266
XM_021597450.2 mRNA downstream 188220 56683064 ~ 56818530 (+) False adcy5
XM_021597451.2 mRNA downstream 189441 56684285 ~ 56818530 (+) True adcy5
XM_021597455.2 mRNA downstream 422608 56917452 ~ 57105517 (+) False sema5ba
XM_021597456.2 mRNA downstream 422608 56917452 ~ 57105517 (+) False sema5ba
TU312833 other upstream 547255 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 547255 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 547255 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 562645 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 1087862 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 769723 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 1294890 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 3557872 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 3557872 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 3792544 60287388 ~ 60290567 (+) True G281141

Expression Profile