RNA id: XM_021597448.2


Basic Information

Item Value
RNA id XM_021597448.2
length 3784
RNA type mRNA
GC content 0.43
exon number 14
gene id LOC110520265
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56652369 ~ 56667591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTTGCAGCCACCTAAGTTTACGGAAGAGCAACTGGTATAAGTGTACAGAGTTTGATGGATGAGGAagggatttaaaaatatatatattcttgaAAAAAATAGTATACGTTTTCTTTCTCAACAACGTCGGTTGGTTTAAAGGGATAAATATGCCTTTATTTGCGCAGAATCCATTCGACCAAGATGTTGAGAAAGCAACCAATGAAACCAATACAGTGGAGGACTGGGCCCTGATCATGGATATCTGTGACAGGGTTGGACATACACCCAATGGAGCTAAGGACTGCCTGAGGTCTGTGATGAAGAGAGTAAACCACAAGGTCCCGCACGTTGCCATGCAAGCCCTCACCTTGCTGGCTGCCTGTGTCAATAACAGTGGAAGAATCTTTCACTTAGAAATCTGCTCACGGGACTTTGCCACTGAAGTCCGAGCTATATTGAGCAGGGCCCACCCCAAGGTGTGTGATAAGCTGAAGGGGATGATGGTGGAGTGGTGTGACGAGTTCCAAAAAGATCCACAGCTCAGTCTGATCAGTGCCACCATTAAGTctctgagagaggagggggtcgCCTTCCCGTCTTCTGGCTCACAGGGGTCCAGCCTAAAGGTCACCACACCTGCTGTTAGTAAACCATCTGACGATGACGACCTTGCCAAAGCAATCGAGCTGTCCCTGCAGGAACAGAAGCAGCATGCTGAGACACGGCCCCTCACCGTGTCCGCCGACCCCCCCTTCAACACCAACGGAGGAGGGGGTAGCAAGGACTCTAGGAAGGTGCGGGCGCTCTACGACTTTGAGGCGGCCGAAGACAACGAGCTCACTTTCAAGACGGGGGAGCTCATTCTAGTCCTGGACGACAGTGATTCAAACTGGTGGAAAGGAGAGAACCACAGAGGAGTAGGTCTCTTCCCATCCAACTTTGTCACGACCAACCTCAATGCTGAGCCTGAACTAGTAACGTATGTGGAGAAGACACCAGCCCCGGAGGAGCCCAAAATAGAAGCCATAGTGGAGTCTGAGCCTGTCTTTATAGATGAGgagaagatggatggagcgcTGTATCTGCTCCAGAATACTGACCCTGCTGACGCAGCACCTGACTGCCCTGAGCTGGTCCAACTGGAGGGTGCTTGTGAGCAGATGAATCCAATGATTGATGACAAGCTGGAAGACATTGACAGGCAACACTCTGAGCTGTCTGAGCTGAATGTGAAGGTGCTGGAGGCCTTGGAGCTCTATAACAAACTGATGAACGAGGCACCATTCTACACAGCCTACTCCAAACTGCAGTCCCAGCAGCAGCCCCACTACACACCTGCCTCTCAACTCCCCATGCAGggaTACCCAGGTCAGGCTGGTGGTTCCTACATGCCTCCAGGGATGCCCCAGGGCCCCCCAGGCCAGCAGGCCTACATGGGCTCTGACCAACCCGGACCACTCCAGTCGCTCCCCCCTAACGTCACATCTCCCAATGGTCAGCCAGCACAGCTTCCTTACAGTTCTCCATATGCACCTGCCGGTTACCCACCACAGATGGGTGTAGCCCCACAGATGGACATGTCGGCCTATCAGAACTCCAACCTGCCACCAGCCTCCTATCAAATGGCTGCTTCATCGCACCAGGCTCCACAGCAGCAACAGGCCTACTATCAGCAGCCTCTCCTGTAAAGTGCAATACAACTAAGGCTGTCTGAGTGAGCAGCAGCATATCCCCACCAACAGACACAGTACAACAATACACAAGTGTGTGTGATTATCCTCCCCCTATTTTGACCTTTATGATAAAATGCCctttacgtagtgcactactgctctggtcaaaagtagtgcactacgtagggaacagggtaccatttgggacactacCTAGATGATTGTAACAAAGGTCAGTGGCTGTGTGAGAGGGGGGAGACTACATGCCAACCTACCAGCCACCACAGCCCATTTTGAAGGGATGAACGTTTTAAGTAGAGAGTGTAAAATAAGTAATTTTCCTTAACCTGGTTTGCCTCAAAAACATTTAAGTGGGCAGCTGTCCAGCTGATCATTTCCAAACTGCATCAtagatggtatgtgtgtgtgtttgtccctgttcagttttttattttatatttttaaatgttgatTTCTCTTCACCCTCTGGTCTATCAGGAAATCAGTCCATGGCTGGCCAGGACAAGTCAATtcaaaatggaattgaccccgaCCAGGACTTGTTTTTTTCTATCTAACAGCATAATCCACTTTAGTTTACCCTTCTCGGGGCCAAAGGTTATGAAGTGCTACAGCTATCTGTATTTCTTTCTGTGGTTTAGTCACTACTATAATACCGCAATATAGTTAGATTAATTTCCCATACACTGCCTGCCTTGCAACACCCTTTGGGTGTTTAATACATTATAGGAGTAAAGCAAAAtgtttaaacatttttatttgtgtGCTACTTCAAGGTGAATTTATCAATTTAACTTGGCGTTAAATAGATTTTGAATTGTGACCATGAAGCCTTTCCAAATTACTGCAGTTTTAGGTTCAATATACAATTTTATACACATTACTTTTTTTGTAATGCAAATGTGATCTAGCCTGGTGCctgtctgtttctgctctcttgctAACTCATGGAATTTgtcatgtttggcttgacaataaCAATACTGCAGTTGGAAAGATGGTGCAaaaagatctgggaccaggctaaataACAACATGGCTTTTGGTTAACACAATATTCATGTGCCAAGGCTCTAGGCAACTTCCTGGAGGCCCCACATACAGTGATTAACAAGATGTAATTGCAAGCTATAAGTGGTTGATTGGGAAATGAGCCTAGTCCTATCTATTTTTCTATGGTCTTTCTTAATTCAGTCTTTTGttgaaaaggcttttgacaaTAGACGTTATTAATAGATGTCTGTGATTTATTAAATTGATATCTGTCTGCTTTTTATGTTTCTGGGCTGTGAGCGGTCACGTTTTCATAGAAATCTATTTCCCGAACATATTTTCATTTATGCATTATCTTTGCATTGGTATGGCTGTCTGCTCTGCAGTTGGACCTTTAATTTTAATGTTGTAATTCTATTTGTATTATAtttgttatattatatattttccCTGGATTATATCCATATGATCAGATAATATTTTATGGTTTCTAGATGTAAGATATACTTTCTGCTTTTAATGCTTTTGTTTTTACTTTATTTGTGTCTTATCCAAAATGCAAGCAGAACAAATAGCTACCGTGACCAACAGCTAGAAATGGGTATTTACTGATAAAGGTGTGGATTGTACAAAGACTAGTAGCTAGAGAACTGTTAGACCTAAAATGTTCATCTGAACTTAATGAATCTGTTGAGTGAGACCGAGGACCAGGATTCTGTTTTTGTTTAATCTGGATCAAGTCAACTCTGACTCATAAGAACTGTCTATGCTTTATTTGTCTTTTAACTTGCCTCTTAAAAGGTGTTGTGTACATTACATGTAAAATATCTTCTGGCATTGTGGGTATTGCACTTTAACCTTGTTAACATTTTATTTACCACTGGATGCCTTGTTTTTCTTTAGGAATAAGGAATtgacatctgtatatctagaatTCTTTATATTTAAAACGTTTCCAGGGAATGTTCCGATTCAGTACTACCGACATAATAACCGACTATGTTTTGTAACATCAAGGTTTCTCTTTATCTTGTGTTATTGTAAAAAATCATTTCGAAACACAGTCGACTAATATTCTTTCAAATAAAATGTACCTGTGTTCAAGGCTCTCT

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314294 lncRNA downstream 166697 56484375 ~ 56485672 (-) True G276844
TU314293 lncRNA downstream 168654 56483429 ~ 56483715 (-) True G276843
TU314290 lncRNA downstream 171887 56480259 ~ 56480482 (-) True G276840
TU314283 lncRNA downstream 182658 56468912 ~ 56469711 (-) True G276835
TU314273 lncRNA downstream 190573 56453003 ~ 56461796 (-) True G276829
TU314381 lncRNA upstream 3903 56671494 ~ 56672592 (-) True G276907
TU314446 lncRNA upstream 151054 56818645 ~ 56819892 (-) True G276969
TU314475 lncRNA upstream 199619 56867210 ~ 56902275 (-) True LOC110520270
TU314588 lncRNA upstream 300445 56968036 ~ 57046855 (-) True G277110
TU314649 lncRNA upstream 386394 57053985 ~ 57054282 (-) True G277168
XM_021597444.2 mRNA downstream 1416 56600804 ~ 56650953 (-) False LOC110520263
XM_021597446.2 mRNA downstream 1416 56600804 ~ 56650953 (-) True LOC110520263
XM_036974742.1 mRNA downstream 21622 56600804 ~ 56630747 (-) False LOC110520263
XM_021597447.2 mRNA downstream 51796 56589557 ~ 56600573 (-) True arl5a
XM_036974733.1 mRNA downstream 73719 56495151 ~ 56578650 (-) False LOC110520260
XM_036974743.1 mRNA upstream 164807 56832398 ~ 56843811 (-) False LOC110520269
XM_021597452.2 mRNA upstream 164807 56832398 ~ 56844653 (-) True LOC110520269
XM_036974745.1 mRNA upstream 199618 56867209 ~ 56917413 (-) False LOC110520270
XM_021597462.2 mRNA upstream 475844 57143435 ~ 57206958 (-) True slc49a4
XM_021597463.2 mRNA upstream 565042 57232633 ~ 57260239 (-) True LOC110520276
TU312498 other downstream 1240882 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1240882 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 1533157 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1969564 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 3401285 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 603191 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 735393 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 916795 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6046984 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 8301958 64969549 ~ 64970755 (-) True G286522

Expression Profile