RNA id: XR_005050753.1


Basic Information

Item Value
RNA id XR_005050753.1
length 9471
RNA type mRNA
GC content 0.48
exon number 24
gene id sema5ba
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 56917452 ~ 57105517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCCTGGCCTCGCCACAGACATTTAAGCGCTTCTAGAATTTGAGAGCTCTCAACGATATTTGGTTGACCCCACCCCAGCTTTTAAAGTTAATGTCCTGAAATTCTTCAAATTTTGCTATGGGTTGTAGATACATTTTTAAATCACATTTTCCCCAATTCTAAACATTTAGCAGATTTTAAACTAATTTCATGTGATTCTACAAATTCTGCCATGGGATGGATACTTTTTTgggcagttttaaagctaatttcctgcaattctaccatGACTTGTGCCGGTCATTTAGCagatttaatctttatttaaataagcaagtcagttaagaacaaattcttctttacgaTGACAGCTTACCTCAggcaaaccctaacccaaaagACACTGGACTAGTTGTGCACGCCCTATGGTAGTCCCAATCACGGctgttgtgatgcagcctggaattgaaccagggtctgtagtgacacctctagtgcCTTACACCGCTGCACCATCCAGGAGCCCCCAGATGCTTTTATCAAGAGCaattaggtttaagtgccttgctcaagggaacggcgacagattttcacctagtCATCTCGGGGATTTGaatcagcaacctttcggttactgacccaacactcttaacctctAGTGCACCTATCCTTACACCATAATCTATTTAAATGCAAAGTTGCTCCAGGTCTATGTTATTTATCTGAAAATAAATGGGAACATAACTCAGGCAACGATCCAAGTCTGGAAAGGCAGCTCGATGTGGGCGCATCATGTAGGCTACTGCTCTCAACCTGTGCTAGTGCCGGGAAATCAGGAATTGCCACTACAGTcagaccactgtgactgaacTAAACCATTCAAACTTCAAAACTGAAATCAACTGCCATCAGAGATaatttaatgtttttattttttttatgtgtgAAAATTATCTTGAACTTCCGTAGATTCAGATATAAAGTCATTGTAAGCAGGTTGACATGGGTTCCCTTAAAAAACAACAATAGTCAGGCTTTATATTGGTACCAACCTCACATAGAAGATCAGCATCCGGGGAGACCATGAACAATGAGGGGTGTTTTTGTGAGTAAAATAACATTTATTGCACATCACCAGATAATAATTAAACAAATCACGTTAGTGAAGTGTCTTTAATATGAAACACAGGGAGGTCATCACAAACCTTTACTCCATACTCCAAGTATGTATATGCGCTTGTCATTTTTTTTATAGCAAATTCTCTCTTGTGCACCCCTCTCGGTTAGAGTTGCGATGGTCCTTGTAGTAGCTTCCAACTCGCAGAGAGAGCGCAGTAACCAGCTGCAGGTCGTTTTGATCGAGAcattggagagaggagggagatagacTTCTGTTGAGCCTGAAGAATCAAGGAGAGCCCTCGTGCTTTGCGTGACATTTAGAACGAGTTAGAAAAAACATCAAAGGTTTCTAAAAGATAGAACAGCCCTCTCAACCCATCCCTGTAGCCACAGGACCATGTGCCAGTGATGACTAGCTGTTGTATCCCAGAGGCCCACCTTGGCAGTTAGAGGAAAGGCTCCGCCCCCATCACCATGACAGCAGCGTTGCCACGGAACGCTGCCCCCCTGTCTGTGCCTGGCCTGTTGCTCCTCCCCCTGCTTCTGCTGCCCCTCCCCATCGCACTGTCCCAGAAACCCATGCTGCCTTCCCCACCCGCCCCCACGCCCGCCCCCCAGTACCTATCCCGGCCGGAGTGTACCCAGAGAGAACACCCTGTGGTCACCTTCCAAGCCCTGAGTCCTTGGATCACTATATTCTCCCACCCGGATGTGAGAGACTactctcaactgactcttgaccTGACCAGGAATGAGTTGATAGTGGGGGCAAGAAACTTCCTCTTCAGATTGAGCCTCAACAATGTCTCTCTCATCCAGGCAACGGAATGGGGTCCAGACGATGACACCAGGAGGTCCTGTCAGAGCAAAGGGAAGACGGCGGTGGAGTGTCAGAACTACATCCGCGTCCTGCTGGTCAATAAGACTGAGGTCATCACCTGTGGAACCAACGCCTTCCAGCCCCTCTGTATCACCCGGGAGGTAGGGAATATGAGTAGTGTGTTGGATCGCGTGAACGGCGTGGCAAGGTGCCCCTACGATCCTCGCCATAACTCCACGGCGGTGGTGACGGAGAGCGGCGAACTATATGCCGCCACAGTCATCGACTTCTCTGGTCGCGACCCTGTAATCTACCGGAGCCTGGGGGGCATGCCACCCCTCAGGACGGCCCAGTACAACTCCAAGTGGCTCAAtgagcCCCATTTCATCTCAGCCTATGATGTGGGTCTCTTCACATTCTTCTTCCTGCGTGAGAACGCTGTGGAACACGACTGTGGGAAGACCGTCTACTCCCGGGTGGCCCGCGTCTGTAAGAACGACATCGGAGGGCGGTTCCTACTGGAAGACACCTGGACCACCTTCATGAAGGCCAGGCTGAACTGCTCGCGCTCCGGAGAGTTCCCCTTCTACTATAATGAGCTGCAGAGCACCTTCTATCTGCCTGAACAAGACCTCATCTACGGGATATTCACCACCAATGTgaacagtatagcaGCGTCTGCAGTGTGTGCATTTAACCTCAGCTCCATCACCCAGGCCTTCAATGGGCCCTTCCGTTCCCAGGAGAACCCCCGCTCTACCTGGCTGCCCACCCCCAACCCCATCCCCAACTTTCAGtgTGGTACCATAGATGACGACGGCGGTCCTAACGATGGTCTGACGGAGCGCAGCCTCCAGGACGCCCAGCGGCTGTACCTGATGAACGACGTGGTGCAGCCCGTCTCTGTGGACCCCTTGGTCATGCAGGATGACGTGCGCTTCTCCAGGCTGGTGGTGGACATCGTACAGGGTCACGACACACTCTACCATGTCATGTACATCGGCACAGAGTACGGCACCATCCTGAAGGCTCTTGCGACCACCAATAAGAGCCTTCAAGGGTGTTACCTGGAGGAAATCCAGCTCTTCCCCGCTGGGGTGCAGGAGCCAATCTTGAGCCTGCAGATCCTTCAAAGTGATAGGTCACTGTTTGTAGGACTCAACAACAAAGTTCTGAAGATCCCTCTGGAGAGATGCTCCAACTACAAGACTGAGATGCTATGCCTGGAGGCCCGGGACCCATACTGTGGCTGGGACAGGAAACAGAGGCGATGCACCACCCTGGAGGATAGCTCTAACATGAGCCAGTGGAGTCAGAACATCACTGTGTGTCCGCTGAGGAACCAGATCACCATTGGCGGCTTTGGACCCTGGGCAGCGTGGCAACAATGCAGCAACGACGATGGCGAAGGCACCAGCACCTGTCTGTGTCGCTCCAGGCAGTGTGACAACCCTCCAGCTCGCTGTGGTGGGAGGAACTGTGAGGGGCCCACCATCGAAGTCTCCAACTGTTCCAGAAACGGAGGCTGGACCCCCTGGTCGTCATGGGGACAGTGCAGCACCACCTGTGGAACGGGGTTTGAGATGCGCCAGCGCTCCTGCAACAACCCGTCGCCCCGTCACGGTGGTCGCGTGTGTGTGGGCCCCGTCAGGGACGAAAGgTTCTGTAACGAGGGTGTGTCATGTCCCCAGCCTATCTTCTGGTCCCCGTGGGGTTCTTGGACTAAGTGCAGTGCTGAGTGTGGAGGTGGGGTCCACTCCAGGGTCAGGAGCTGTGAGAATGGGAACAGCTGCCCAGGCTGCGCACTGGAGTACAAGGCGTGTAACCTGGAGGCATGTCCAGAGGTAAAGAGGAACACCCCCTGGACCCCGTGGATGCCCATCAACATGACCCAGGGCGGGGCACGCCAGGAGCAGAGGATGCGCTACATGTGCCGCGCCCAGCTGGCAGACCCCCACGAGCTGCAGATCGGACGACGCAAGGTAGAGACCCGCTTCTGCCCCAACGACGGCACGGTTGCCTGCGAGACCGACACTCTAGTGGAGGACCTCCTGAGGACCCCTGTGGTACGAGTGGCAGGCGCCGACTGGTCGTCATGGGAGACATGGTCCGCCTGCTCCCAGGACTGTGCCAAAGGGTACCGCACCCGCAAGCGCACCTGTACCACCCCAGAGGGCAAGGCTGCCCCGCCAGCCTGCAGGGGCTCACCCGTGGAGTACCAGGACTGCAACTCTCAGGCCTGCCAAGTGAGTGGAGCCTGGTCGTGTTGGTCGTCCTGGTCTCAGTGTTCAGTGCCCTGTGGTGGAGGGCACTACCAGCGTACCCGCTCCTGTAACAACCCCAGCCCTGGCAACGGAGGAGATATCTGTATTGGTCTACACACTGAGGAAGCGCtgtgcaacacacacacctgtgatggcggcTGGATGGCCTGGTCTCTGTGGTCAGTGTGTGACAATGCAGGGCTGCAGGTACGCAGCAGGGTCTGTGGAGCTCAAGGCTCATCCCCCTGTGTGGGAAACAGCACCGAGCACAGGGACTGCAATGAGATCCCAGtgaTTCTCCCTGCGTCTGGCTTTGATAAGGACCAGCAATGCGGAGCATTCACCTCGCTGCACCTGATAGCCACAGGCGTGTCCTGTTTCCTGGGGGCGGGCCTTCTGTCCTTTCTGGCCTACGTGTATAGCCAGCGCTTCCACAAGCCCTCGCAGGAATCCGCCGTCATACACCCCACCACACCCAACCACCTCAACTACAAGGGCAACACTACACCAAAGAACGAGAAGTACACGCCCATGGAGTTCAAGGTATTGTCACAGacTCTGAACAAGAATAACTTGCTCCCAGATGAGAGGTCTAACTTCTACCCTACACCCCTGCAGCAGACTAACATGTACACCACCACCTACTACCCCACAGCGCTGGGCAAATATGACTACAACAggcctgactcctccccttccccctgcAGGACCTATAACAACAGCTGAGACACCCCGCCCCCACCCCCATGGCCCCCGGCACCGCCCACCCAGACTGAACTGAACTCCACCCCAATCACAATGGTGACAGATGGAATGGTGACTGAACCCATCCATTTTTGCtcccctctcctttatcccaTGGTATCTACCAAATGGTGAGAGGGGTGTAAGGGTATACCTGGAACATACCATCAGCACTCTGTATAGGTGCTGATGCCTCCATTAAACTCGCTAAGTAGAGCCAGGAATTTGATCATAGTTTGGGGTATATTTTGGGGGGTGTGAGTACTGGACATCACAGTGTCAACGTAGTGCTTCGGTGGAGAGATAAATGatgagctctataagacactataAGCTACATTATGGAGTTGAATTACTTATCCCTGTGGAACTTGACAACCTGAGCGCCTTACTGAAGGTGTTGTGTTGCTATCCAGAGAGGCTAGAGTTGGCCATAGGAGAAAACTCTCTTCCCTGGTCTGTCTGGTCACCTCTATGATTGAGTctctttttaaaatgtaatttcttttttttactccctttttctccccaattttcaatcttctctcatcgctgcaactccccaacaggctcgggagaggcaGCCTAACCGCGCTCCTTAACACCACCACTAGTTTAACCTGGaggccagccacaccaatgtgtcagaggaaacactgttcaactgggGAACGGGGTCAGCCTGCGGGAACCTGGCCttccacaaggagtcgctagagcgcgatgagccaagtaacgCCACATCatccaaaccctctcctaacccggatgacgctgggccaattgtgcgccatcaTATGAGACTCCCGGGCCATGGCCGGTTGTGGCACACCCCGGgaatgaacccaggtctgtagtaacacctccagcactgcgatgcagtggcttagaccgctgcaccacttgggaggcctATAAATCTCTATGACACCAACATACCCTCGGTCTGCAGCATCCATCCCCATGATAAACACCTAATTCTCCCAACAACAAAAGCAGTTACCCAGAACAACCCTACCAGCGCATATCATTTTGTCTGTCCTTCAGTATGGTGGATGCGAATCGGGAGGGAACAAAAAAAAGAACTAAATTAATTCAAGAGATGAAGAGATCAATATCAGTATTGTGTTTGGAGGTGGATGGATGCACTCAGGTCACCTCGCCTCATCAAATGACACGAGGAGGACAAGTACCTGGGACCTCAGCTCTGCTGTTGCGCCATGTTTTTGGGTGGTACTATGGGACCAGGGGAACAGAGGCACATCCAGGAATGGCAGCGTGTGATCTGTTATAGGAAAAGTGCCTACACTAGACCACATAGATACAGACATACTCACTGCTGGAGATAATCTCTATCTGCTTATGCCCAAACAAGGCCCACACCTCAGGCTGGCTGTGTTATGTACTGTATGGGTATGTTCACAAGGCAATGTTTCCCAGGGAATGATCTGAACATGGGCTAGAGAGATGAGGTGTCTGACTGAAATACAGTGGGAATCATCCAGCTTTGGGTATACAATAGACAGGATCATGTAGAGTCAAATTTGACTTTCTATCACTTCTTTTTTATGATGATATAAAGACTTTTGGAAGGAATTCCCTTGGTTCTAGAATGGAATGGATGTATTCTACTGAGTACTATACCTACCTACCGCTCAGTGGTCATATTAAATATGGCCAGTGTGCAGAACTGGACTGCAACCGATTTTATATGATATCGTACAAGGTGGGATAAAAAAGTAGTGGGGCATTTTTTTATGAGGGAGGTTATTTGTTTGATGTTCAAGAGAGCAGTAGGATAGGAGGAAATATTTTATTTCACAAATAAGGGATAGCTGATTCACTTTTGAGTTTCTCATCGGTTTCACACCACAACATATAAAAAAAATCACAGCAGCTTAGTAGCCAATAGGTGTCTGACAAATGAAAGGAGAATATTGCTTTATTACAACCACAACTTTATTTTTGAAggcatgttatagaagggtccagAACTTTATTTTTGAAggcatgttatagaagggtccagaccgtttttgttgttgttgcaatttcacttgtttttgagaaacCAGCGAGTCACAACCTCATCCTCGTTGTGCAGTACGGGAGCTctgaaaaaacatgaacaaatgcTCCAAAAACACTCAAATCCTTTTAGAAACGCAAAACCttcagtatagtgatgcaggtctttagataTTGTACACGTGAAATTGTGTCATTGCGAACTTTATCCGCAACATTATATTCCATTTTGTGCAACTCAAGCTGTTTCCCCTATCCAGCTGTTCCATTCTCCTAGTGGCCTGCTGCTAAAATGGACGGAGAGGTATCATTCCAACAAAATGGAATATAACGTTGCGGATAAAGTTCGGAATGgcacaatttcatgtgtacaacatctaaagacctgcatcactatactgagaggGTTCCTGTTTCCCCAAGAAAATGTTTTGAAgcatttgttcatgttttttcagAGCCCCCGTACTGAACAACAAGGATGAGGAAATGACTTGCTGGTTGGGGTAAgttaattcaaataaaataaaaagtgaaatTGCAAAAATAAGTGTCTGGACCCTTGTATAGTACTGAATAATTCAGTACATATAAAATTGAGATTTGGTTGTAAAAACACACACTATTCTCCTTTAAGattttacaaaaataaaataatgtagaaGCAAATATTCAGACTGACTGTAGCGAATATCAATGTGTCCCTCTCTTTACAATGCTAAATCATGCTTAAAATGCTTTGGTATGAGAttattgttgtgtgtgtgcgtgtgtttgcatgtgtgtgtgtgtgtgtgcgcgcatgttggcgtgtgtgtgtgtttgcttgcttCGTATGTGTATGCCTGTGAGAGGGAATGAggagaggaacagacaactgtatgtattttgtacaatgtaaatgtaattctTTCTTACATATGACTGTGTATATAATGGGATCTGTAAAGGGGTATGTGCATTTTTTCCACACATTATGATGATAGCACTCCTAATGTTCCACTGGGTTTCCATATGTTCCATGTATAAGATGATAATCACTGTAAGTTAACGAGAGCTGCGCAGTTCTCATAAGGAAACACTATTTATAGTGAAGCTTGGATCATAAAGGGCATTTCAGAAACAGAACTGAGCTATATTTTATTATTATGCCCGCTGTTAAAATGAATGCTAATTTAGCAGCAATGCTTTCAGTTCCACTCATAGAAATGGTATGATTCTATTCTATCGTTCTAATTCTATAGTTCCCGTTATATGCACGAGAGCTCTATCTGTACATAAGAGACAGCCTTCGATCTGCAGAGCATTAATGACATCTAAAGGTTAGTATAATGTAAATGTATATTGTTGTATAGCTaacactgtttaaaaaaaaaaaagccttagttgaaaaaaatctataaaaagtGCAGCAGCTATGTACTCACCAACCATGGGGTTTGTAAGGGGATAGAGTTTGTCAATGTGACTGGTTGACTACGGCCTGGACAACTTCTCCAGCTGTTTTGTAACTTTCTATAGATGTACAGTTTGTCCAGATCCTATGTAGTATCTTAATccccgtttatacctggtgctaacataCATGCCTTGTCCTGATTGTGTCCACATCCTGATTGTGCCAACATATGCAGACAGGTATAGATGATCAAAAGACACATTATGATCTGATTGTGATTAGATCTTACTGACCACCTCTGGAGGTAGTCAGGGACTCATTCTGTCTGGCTATCTCACAAGTCTCTGGACAGTGAAACTATTTAAATCATAATTATATTGCCTTCTAAAAGAATTGACATgtgtcttaaaataaataaataaatattattttgaaagaaaTCCATCAAATCATTTTCGTACAGTGAGGGACCATGAAATCTGGTCACAGTGCGGACACGGTGGATGAATAAGGCTgtctgtctaaacgcagccttaTTCATCCACCGTGACACGGATTTAGTTTTTTTACTAAATGTTCACCAGGTATAAATACGGTTTAGACAGCCTGTCCTTTTAGAAGCACTCGTGCCATTTTAATACAAAATATCACCACAACAGTTTaaaaaacataaacattttaaatGAACAAGAACAAGACACAGAAAATGGTGAGTAGTGTATAGTAACAGTATTACGATAGTCCATTGACTAGATCAAAGTAATTCAGCTGTTTAGAGGATTTACAGCAACCCCTCCACCCAGTGGTTTTCCTTTTCCCCACTTGCCTGACCCACATTTTTTGGGTTTGTGATTGGCTCCCCCTAAATGATGACTCCCTTTGATTGTCTTCCTCTGGCCCTGTAGTAATTTTTGATTGGGCAAGCTGGATGTCACATTGTGAATCTTTGTCCCCTGATTGGCTCGGTGCCCTTCTATGCAACTGACCTGGTGGTACTATTAGATATGTGATGTAGACTGTAATCACTGCCTTTTAGACACTGTGAATTTTTTGGTACTCTATATTTTTGTATATTGTACATTATAAAGGATAATAAACCTTGATGCCaacatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313325 lncRNA upstream 288825 56628314 ~ 56628627 (+) True G275953
TU313309 lncRNA upstream 304822 56608773 ~ 56612630 (+) True G275937
TU313305 lncRNA upstream 313527 56600813 ~ 56603925 (+) True G275933
TU313262 lncRNA upstream 365207 56550750 ~ 56552245 (+) True G275903
TU313248 lncRNA upstream 365729 56546797 ~ 56551723 (+) True G275894
TU313632 lncRNA downstream 35429 57140946 ~ 57145348 (+) True G276240
TU314755 lncRNA downstream 115045 57220562 ~ 57222649 (+) False LOC110520274
TU314756 lncRNA downstream 117169 57222686 ~ 57226116 (+) True LOC110520274
TU314761 lncRNA downstream 127148 57232665 ~ 57233877 (+) True G277276
TU314765 lncRNA downstream 134554 57240071 ~ 57245276 (+) False G277279
XM_021597450.2 mRNA upstream 98922 56683064 ~ 56818530 (+) False adcy5
XM_021597451.2 mRNA upstream 98922 56684285 ~ 56818530 (+) True adcy5
XM_021597449.2 mRNA upstream 236885 56668133 ~ 56680567 (+) True LOC110520266
XM_036974740.1 mRNA upstream 422608 56463388 ~ 56494844 (+) False rif1
LOC110520274 mRNA downstream 116130 57221647 ~ 57230455 (+) False LOC110520274
XM_021597468.2 mRNA downstream 229520 57335037 ~ 57405623 (+) False LOC110520279
XM_021597467.2 mRNA downstream 253358 57358875 ~ 57405623 (+) False LOC110520279
LOC110520280 mRNA downstream 321908 57427425 ~ 57435274 (+) True LOC110520280
XR_005051426.1 mRNA downstream 325051 57430568 ~ 57430693 (+) True LOC118964378
TU312833 other upstream 1001319 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 1001319 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 1001319 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 1016709 55900194 ~ 55900743 (+) True G275542
TU312074 other upstream 1541926 55374546 ~ 55375526 (+) True LOC110520231
TU314786 other downstream 159050 57264567 ~ 57264892 (+) True G277296
TU315509 other downstream 684217 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 2947199 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 2947199 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 3181871 60287388 ~ 60290567 (+) True G281141

Expression Profile