RNA id: XM_021597465.2


Basic Information

Item Value
RNA id XM_021597465.2
length 2478
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110520278
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57321238 ~ 57330396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTCTTGAAGTCCATAATTCGCTCATAGATGGTATCGAATGGAGGTGGAAAGTTTAATGTTTGTTAACATATGGTTGAAACCTTTACTAGAATATGAATGGAATAACATACTCAAACTTTGATAATCTCGAACATGTTTTGAAATTAGGCGAAACATTTGAGAAACACCCAAAAGGCGCTTACCACACGGTGAGATATGACTTTAAACCAGCCTCCATTGACACCGCCTGTGTGGGGGAGCTGGAGGTGGGAAAGGGAGAACTAGTTACTATCACACTGCCCAATCTGGAGGGATCCACTGCCCCTGTAACAGTCTTCAAAGGATCCAAGAGGCCTTATATGAAGGAATGTATTCTCATCGTAAACCACGATACTGGAGAGTACCGTCTGGAGAAACTCAACAGCAACATTGCTGTCAAGAAGACCAGGGCTGAAGGCAGCAGTAAGATCCAGTCTCGTATAGAGCAGCAGACCAGTCGTCTGAGCCAGCAGATGAagactagtggtaatggtagcagCAGCAAGACCCCAGCAGGCTCCAAGAGCTCTCCTCCCAAAGAGAATATGTCCCCTGCCTCCCCCATGGATGACATTGAGAGAGAGCTAATGGCAGAGGCGCGGGTCATGGACCAGATGAGTAGTGGGGACTCGTCCTCAGACTCCCACAGCTCCTCATCCTCCAGTAGTGGGGACAGTTCCAGCGGTAGTGACGCTGAGGACGAGTCCCGgcacccccctccccctagaCCCCCTGGGGGTCCCCCCACAGGGCCACCACCCCACCAGGGCATGCCTGTCCTCAccactgtcaccaccaccacctccccaccaTCACCAACTCGCAGTGGAGGACACCTATTGAGCACACTAAAGAATGACCTGCAATTAAGTGAGTCGGGCAGTGAAAGTGACGATGACTGACCAGTGAGTGACCACTATAATGCTGTGGGTGTGTTCAAGAGGTCAGTCTGTGGACAGCTGCACTGACCTCCAGATGGATGGGCGTCCTTTACAGTTACAACAGAAGTGGAATAAGAAGATGGAATATGGATGTGATCTTCTTAATGCCAAACAAGACTGCACCCCTACACCTCCGGAAGCAACACCGCTCAGCACCCCACCAGCATTTCAGTTTTAATGTGTCTTAATTCTATCAATAGTCTGACTTGTCTGTCTGTTAGTGCCTTTTTGACAGACATGGGCCAATAGTTGTGATCAATTCTCTTATCTACACATTTGAACTGGATTATTTTCACTGTACAGTTTAGTATTTACTAGTTGGCCAAAGTGAACTGGGAACCATACTCCTGATTCGAACAGACAAGGTACTGCTGTTATCAAGGATAGCGTCAgtgttttattagttgtagtacTTAGCCTTTCTGCTGTGAAATAATTACTCTtaaaatatagggaataggttgaagCAGTCATATCATTTAGTTTATTAGGAATTATCTTCAAGTTACTTTTTTTGTTTAATATATTTGGCCAAGCAACATATCAAGGTGGGGGGTATTTGAGGAAACTATTGCACTACTTGAAATGGATTGATTTAGCCTAGTGTGGGGTACACGCAACTTAGATTTTGCTCAGTGTTGCTACTTAATGTATTTGAAAGATTACTTGGCTTTGTAGCTTTAAACCTTCAATACTTGAATCTGACTTATGATTATTTATATTTAACATATTTACTCAAAGACCAACAGCTTATTATATTCTATGGGCGTCAGAGCAATGGAGGTGTAGGTAAACTCGTAGTGCCTGTAATTAGAACTGCTTTTCCGTTCACTACGATCTCTTCTGTTGCTATTGTTACAGGGGTGAGTCTCCAAAAGTGCTTTGCTGATTTGATTCATCGACTCGTTCTAAAGAATGCATTGGAGAAGAAGGCTTGAGGGTATTAAGCTTGGATCTTATCCATTTGAATATTAAGAAAGAGGTGATTCGTCAAGGAATTCATGAGACACGTGAGGAATCCAGGAAAGACTTCTGAGAAAGAGCCCAGGTCATATCTCGTATCTTGCTACTGCACCATCTCTGTAAATAGGAAATTTGTGTTTTATGTTAGAACATATGGTGCGTCgcaatctctcctttctcccgaagtgtgcacttgttcacttcccttcatggattcGAAAGGAAATCACTGGCAAATGGAATCTCTACCTTgcccatgcctccaccaatccaatgacTTTATATTTGTGGGGAGTTGTGaatgagtgcacacttcaggagaaaggagagattattgggaTGTAACAACCATGACCTCTCATAACAAACTCGGGCAACTGGGAAAGAAGGGCAGAGAGTGAGGAAACAGCCTCTGACTGGATAAATAATGAgaaattgtaataataataataatagtaatatgttgGAAGAATTTTGGATTCAGTAGGTGGTCATGAATAGGTAGCTATTTTGACTTTTTTCATTTTCGATAAATAAAACGTTATTGTTTGTC

Function

GO: NA

KEGG:

id description
K15186 EAF; ELL-associated factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315112 lncRNA downstream 54042 57266936 ~ 57267196 (-) True G277604
TU315082 lncRNA downstream 98621 57220587 ~ 57222617 (-) True G277576
TU314744 lncRNA downstream 112040 57208933 ~ 57209198 (-) True G277259
TU314730 lncRNA downstream 131294 57188664 ~ 57189944 (-) True G277245
TU314649 lncRNA downstream 266956 57053985 ~ 57054282 (-) True G277168
TU315093 lncRNA upstream 2172 57332568 ~ 57335897 (-) True LOC118963713
TU315156 lncRNA upstream 19176 57349572 ~ 57349815 (-) True G277647
TU315157 lncRNA upstream 19999 57350395 ~ 57350781 (-) True G277648
TU315158 lncRNA upstream 20985 57351381 ~ 57351609 (-) True G277649
TU315162 lncRNA upstream 28752 57359148 ~ 57359527 (-) True G277653
XM_021597464.2 mRNA downstream 29711 57272473 ~ 57291527 (-) False si:dkey-91i10.3
XM_021597463.2 mRNA downstream 60999 57232633 ~ 57260239 (-) True LOC110520276
XM_021597462.2 mRNA downstream 114280 57143435 ~ 57206958 (-) True slc49a4
XM_036974745.1 mRNA downstream 403825 56867209 ~ 56917413 (-) False LOC110520270
XM_021597452.2 mRNA downstream 476585 56832398 ~ 56844653 (-) True LOC110520269
XR_005050883.1 mRNA upstream 2222 57332618 ~ 57336298 (-) False LOC118963713
XM_036964539.1 mRNA upstream 79585 57409981 ~ 57414314 (-) True LOC110505369
XM_036974749.1 mRNA upstream 85686 57416082 ~ 57426715 (-) False LOC110520281
XM_036974747.1 mRNA upstream 85686 57416082 ~ 57427276 (-) False LOC110520281
XM_036974748.1 mRNA upstream 85686 57416082 ~ 57427276 (-) False LOC110520281
TU315090 other downstream 23476 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 1909751 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1909751 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 2202026 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 2638433 54679918 ~ 54682805 (-) True G274344
TU315188 other upstream 72588 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 253990 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 5384179 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7639153 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 7683863 65014259 ~ 65029736 (-) True G286580

Expression Profile