RNA id: XM_036974748.1


Basic Information

Item Value
RNA id XM_036974748.1
length 2272
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110520281
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57416082 ~ 57427344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAATGTATATCATATGAGAAGTGTAATGTTTATGGAAATCCATGGCATCAGATTCAATTGTTGcaaagggagggtgtgtgtgtgtgtgtgtgtgtgtcagagggagagggaggaggggtcgTTGGAGTGGGTCTCTACTAAATTAATGTGGTCACACAATAAATTCAAAACAGTGAGGGCAGTGGCTTTAAAAACTGATATGGCAACAAAAATAATCTACTTTACTGTGAATGGAAGACCAGAGCAGGCAGAGTTTCCAGTGGATTGCCCTGCCCAGGATGTCAAAGCTGAGGCAGGACCCCATGACATTCTGAAGCTGTACAACCCTAAGGGCAACATCATCAACATCTCCCCGCGCCTGGAGCCCAACAGTCCTAACTCCTGTTATAAGCTAGAGGTGGTGGCTGCTGACTGCAACAGTGAGCCATTAGGAGTGGAGCTTGCTGTGGCACTAGGATTTGACCTCTCCTCCATGGAGAAAAGACTGCAGGGCTTGGAGAAGAAGATCCTGATCGAGGCTGGTGAGACTCCTGCAGTCGTGTACGAGATGAAGAGACAGGTGGAGTCATTCCGGGAGAAACTTGAGAGTGTTGAGCATCTCAGCTGGCTGGGCCTATTCAAAGAGCTATCTGAGGGAACACAGAAGCCCTCTCCTTTCTACCACAAGAGAACACTGCGCAAGACCAGAGAGGAATGTGAACATGTACGGGAAAAGTTCCTGCAGATGAGTTCTCTGGAGGTTTCAGAAGAAGTGAGACAGTACCTCAAGACCCCAACTTTTGACAACTGGCAGTGGGAGGATGCAGAGATCATGGTTCTACTGCAGGTCATGTACACAGACCTGGACTTCATTGCCACCTTTAACATAGAGCCTGAGGTGCTGCACAAGTTCCTGTATGAGGTGTACAAACGCTACAACAACATCCCCTTCCACAACTTCAAACACTGCTTCTGTGTCAcccagatgATGTATGGGCTGATCTGGCTGACGGACCTGAAAAGTAAGATTGACAGCATTGACCTGCTCACCATGCTGACCTCTGCAGTCTGTCACGACCTTGATCACACGGGATACAACAATGCTTACCAGATAAATGCTCGTACAGAACTGGCCCTGCGCTACAATGACATTTCCCCCCTTGAGAACCACCACTGTGCTGTGGCTTTTGAGATCCTGGAGAAGAATGAAAACAACATTTTCAGAAATCTGACAACTGAACAGTATAAACGGATAAGAGAGGGCATAATCAAATGCATCCTGGCCACTGATATGACGAGACATAATGAGATCCTGAACAAATTCAAGTCCATCCTGCTTGTCTTTGACTTCAGCAACAAGGACCACAGAGATGTGctgATGATGATCATGATCAAAGTGAGTGACATCTCCAACGAAGCACGGCCTATGGATGTGGCTGAACCCTGGTTAGACTGCCTCCTGCAGGAGTTCTACAACCAGAGTGACAAGGAGAAGCTGGAGGGTCTTCCTGTCACCCCGTTCATGGACAGGGACAAGGTGACCAAGCCATCCTCTCAGACAGGCTTCATTGGCTTCGTCCTCTTACCCCTCTTCATTGAGCTGGCTAACCTTTTCCCCTGCCTGGAGCAGCACATCATAGACCCGGTGCGTAAGGCCCTGGACTACTACACAGAGATGGAGAAagccctagagagagagaaactgatcCGAGCACAAAGCGACAAGGCAGCTGCAGCCAAGAACACGACACCCCAGAACTTACAGAACCCTCAGAAAACAGCAAATAGTCTGTCAGAGGCTGGGAATGCCTTGAAACCACCCACTCTGTGATGGCAAGCACTTATATGGTTCCTTTGGTCTTTGTAGAGACAAGGTATTCACTATGTCGTGTTACAGGAGTTGTCTGCTGTGTTTTGCTACAAATGTTTTTCACTGCATATATTCAGTTTTCAAAATATTTGCATATGAATAATGGTTAATTATACAATATGACATACAAGACATACGAAGAATCAGTGTGCAGTTATGTTTTGTATTAGTGATATGCTTAAACGAAAGACCAGAAGAGCTATTGTCTAACTGAAAAATGGGGATAAAGCTTAGTGGATTTGTCTTCACTGAAAATCTGGACTATGGTTGTCATCTAGTGGACATGGGATGTTTTTCATATTGATAATGTAGAAAAAAGGACAGAAATAACAGATATTatattaaatatgtttttgcATGTATTGTACTTTTAGATTTAAGTGTTCTATTTGGAGACAAATAAATGAacacaacaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU315191 lncRNA downstream 11625 57404228 ~ 57404457 (-) True G277676
TU315190 lncRNA downstream 14973 57400899 ~ 57401109 (-) True G277675
TU315186 lncRNA downstream 18705 57396985 ~ 57397377 (-) True G277671
TU315181 lncRNA downstream 24913 57390935 ~ 57391169 (-) True G277666
TU315176 lncRNA downstream 33383 57380911 ~ 57382699 (-) True G277662
TU315151 lncRNA upstream 9430 57436706 ~ 57436977 (-) True G277642
TU315210 lncRNA upstream 20460 57447736 ~ 57448421 (-) True G277692
TU315220 lncRNA upstream 28110 57455386 ~ 57506250 (-) False G277700
TU315218 lncRNA upstream 76872 57504148 ~ 57506250 (-) True G277700
TU315292 lncRNA upstream 92878 57520154 ~ 57522613 (-) True G277765
XM_036964539.1 mRNA downstream 1768 57409981 ~ 57414314 (-) True LOC110505369
XR_005050883.1 mRNA downstream 79784 57332618 ~ 57336298 (-) False LOC118963713
XM_021597465.2 mRNA downstream 85686 57321238 ~ 57330396 (-) True LOC110520278
XM_021597464.2 mRNA downstream 124555 57272473 ~ 57291527 (-) False si:dkey-91i10.3
XM_021597463.2 mRNA downstream 155843 57232633 ~ 57260239 (-) True LOC110520276
XR_005051425.1 mRNA upstream 54320 57481596 ~ 57481720 (-) True LOC118964377
XM_036974790.1 mRNA upstream 171270 57598546 ~ 57609026 (-) False LOC110520284
XM_021597475.2 mRNA upstream 204864 57632140 ~ 57734917 (-) False LOC110520285
XM_021597476.2 mRNA upstream 482331 57909607 ~ 57919306 (-) True LOC110520286
XM_021597478.2 mRNA upstream 506794 57934070 ~ 57943312 (-) False si:dkey-3d4.3
TU315188 other downstream 12507 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 118320 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 2004595 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 2004595 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 2296870 55103494 ~ 55119212 (-) True LOC110520227
TU315276 other upstream 157110 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 5287299 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7542273 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 7586983 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 7627424 65054700 ~ 65055211 (-) False G286638

Expression Profile