RNA id: XM_036974780.1


Basic Information

Item Value
RNA id XM_036974780.1
length 5180
RNA type mRNA
GC content 0.55
exon number 38
gene id clasp1a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57446143 ~ 57554278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACAGGATGAAGGaaagggaggggatggagagaggagaacagggagagagagagagacacacgcagaCGTAAAGCAACATTCTCCCTGACTGTTCACTCTTCTCTCTgcgtggaaggaaggaaggaaggcttTGCACTATGACAGCCGGGGAAGATAAGAACTTTGATGATGAGGACTCTGTGGACGGGGGCCGGTCCTCCTCCTCTGCATCGTCCTCCAAGGCGCCCCCCAGTGGTAGGAGGGCTGTAGCTGCGGCTTCTGTCCGCAGGCCCAGCTCTGCCACCGGACCCGGCAAGATCTCTGCTAAAGATGCTGCTGCAGGTGCTGTTGATGAGGAGGACTTCATCAAGGCTTTTGAAGAGGTTCCTACTATCCAGATCCACTCCAACAGAGATATGGAGGACAATCTCTCCAAGGTTCGGGAGGTTCTATCTGACGACAAAAACGACTGGGAGCACAGAGTCGTCGCCCTGAAGAAGGTGCGTTCTCTGCTCCTGGCTGGAGCGCTGGACTATGATAGTTTCCCTCAGCAGCTCCGTCTGCTGGAGGCCCCTCTCAAGCTGTCAGCTAAAGACCTGAGGTCCCAGGTGGTACGAGAGGCCTGCATCACACTGGGATACCTGTCCACGTTGCTGGGAAACAAGTTTGACCACTGTGCAGAGACCCTGATGCCCACACTGCTCAACCTGGTGCCCAACAGTGCCAAGGTGATGGCCACGTCTGGCATGGCAGCCATACGTCTCATCCTCAGGcACACACACTACTCACGTCTCATCCCCATCATCACTAGTAACTGCACGTCCAAATCAGTGGCCGTCCGAAGGCGCAGTTATGAGTTCCTAGAGCTGTTATTACTGGagtggcagacacacacactggagagGCACGTggctgttctgactgaaaccatcaAGAAAGGGATCCATGATGCTGACTCAGAGGCCAGATCGGTCGCGAGAAAGTGTTATTGGGGTTTCCATGGCCACTACAGCCGGGAGGCGGAGCATCTGTTCCAGGCCCTGGAGTCAACCTATCAGAAGGCTCTGCAGTCTCACCTGAAGAGTTCTGACAGTGTCGTGTCTCTCCCCCAATCAGACcgctcatcctcctcctcacaggaGAGCCTCAATCGGCCCCTGTCTGTCAAGAGTGCCATAGGAGGCAGCATGACAAGAGGTAAGATGTTGAGTTCCAGGGTGAACTCCAACTCCGGCGGTTCCCTTCAGCGTTCCCGTAGTGATGTCGACGTGAACGCCGCGGCCAGCGCCAAGTCACGCCTGATCACCGTGCCCTCCGCTTCTCCCTTCAGCTCAGCAGCTACCCTGCCCCCAGGCTCCTACGCCTCACTAGATGGCACACCCGGTAAAATTGATACTGGCCGTGTGCGTACGAGGAGAACAAGCTCCGGCAATGCTGTCGGAGCCAGCGCTACTGTGACTGACAGCAGGGGGCGCAGCCGAGCCAAAATGATGTCCCAGTCCCAGCGATCCAGATCTGCTAACCCCACTGGGGGTGGTAAGGCCCGAACTTCATCCAATCAGACTGGCAGTCGCTCCAGTTCCCCAGGCAAGCTGCTGGGCCACTCGTCTGGGTACGGGAGGATCAGCAGGCCCCCCTCAGCCTCCAGCACCCCTGCAGACAAGAGGAGCAAGGTCCCCCGCAGCCAGGGCTGCAGTAGAGATTCCTCTCCCAACAGGCTGGGCCTAGCCAGGCTGTGTGGTAAAGCTCTTGTTCCTggtactcctctctcctcctaccacACGCTAGCAAGGAGCCGTATCCCCCGGCCCAGCATGAGTCAGGGCTGCAGCAGGGACACATCTAGGGAAAGCAGCCGAGACACCAGCCCTGCTCGGGGCTTCAAGCCTCTTGCCTCCCGACGTACCTCCCGCTCTACCAGCGCCTTATCCACGGCTGACCCCCACAGCCAGTCAGaCCGATTTGGTTTGATCCACCAGGCCCGCATTTCTGCCTCGGTGAACGCCATGAGAGTCCTCAACACTGGCACTGAGGTGGAGGCTGCTGTGGCTGACGCACTGTTATTAGGAGACTCCAGAAATAAGCGGAAGCCTATGAGGCGGCGCTATGAGTCTCCTGGTATCTACTCTGACGATGACGCTAACAGTGATGCGTCCAGCGCCTGCTCGGAACGGTCGTACGGCTCCCGGAACGGAGGTATCCCTCACTACCTGCGTCAGACAGAGGATGTGGCAGAGGTACTCAACCACTGTGCCAGCTCCAATTGgtctgagaggaaggagggactGCTGGGACTGCAGAACCTGCTGAAGAgtcaaagaatactcagCCGGGTGGAGCTGAAGAGACTCTGTGAAATCTTCACCAGGATGTTCGCAGATCCACACAGCAAGAGAgtGTTCAGTATGTTTCTAGAGACTCTGGTAGACTTTATCCTGGTGCACAGAGAGGACCTGCAGGACTGGCTGTTCGTCCTGCTCACCCAGCTACTGAAGAAGATGGGAGCTGACCTGCTGGGGTCTGTCCAGGCCAAGGTTCAGAAGGCTCTGGACATCACCAGGGAGTCTTTTCCGTTTGATCAGCAGTTTAACATCCTGATGAGATTCATTGTGGATCAGACACAGACACCCAACCTCAAGGTGAAGGTAGCCATCCTGAAGTACATAGAGTCACTGGGAAGACAGATGGATCCTACAGACTTTGTCAACTCCAGTGAAACGCGACTGGCTGTATCTCGCATCATTACGTGGACCACAGAACCCAAGAGCTCTGACGTCAGGAAGACCCTTCATAACTGGGTGGTGGAGGAGCTATCAAGCAGGTCCGGTACTGCAGCCTTACTGGAGGGGCACCTGGAAGAGAGGTGTAAGCAGGCGGCCCAGGTGGTGCTGATTTCTCTGTTTGAGCTGAACACCCCGGAGTTCACCATGCTGCTGGGAGCCCTGCCCAAGACCTTCCAGGACGGGGCCACCAAGCTGCTCCACAACCACCTCAAGAACTCCAGCAACACCAGCAGCGTGAGTTCTCCCAGCAACACTATTGGGCGGACCCCACCCCGCCACACCCCCAGCCGGACCAGCCCCCTCACCTCTCCAACCAACTGCTCCCATGGCGGGCTGTCTCCGAGTCGGTTGTGGGGTGGGTGTTGGAGTGGCGATGGGCTGTCTaagcacccccctccccctcatcctcctccgcctccctccaccccctctggccCCGCCCTCAGGGTCCTCCGCAGAGCGTACTCTCCCAGtatgttgGAGTATGACACAGAGAACATGAACTCTGATGAGATATACAGCTCCCTGCGAGGGGTCACAGAGGCCATCCAGAGTTTCAGCTATCGCAGCCAGGAGGACCTCAACGAACCAAGAGGGAAGAGGGACGATGCTgtGGGGCGTGAAGGTGTGGCGTCCTCCCCAGGCTCGGATGCCCGTTTGGGGCTGGATGTGGTGGAGGGTGGGCGTACGGCCTTGGATAACAAGACCTCCCTCCTCAACACTCCGTCTCCCCGCTCCTTCTCCGGGCCGCGTGCCAGGGAGTTCGCCCCCTACGGCTATGGGGACACCATCACCTCATCCTACGACAAGAGTGCCCTAAAGGAGGCCGTGTTCGACGATGACGTGGAACAGTTCAGAGACTGCCGTCGGCAGGACGGCAGTGGTGAGAACAAGATGGTGCTGCCTAAGGGCTTTGCTCCGGgTTCCCAGGACCACTCAGACCTTGTGGCAGATCTTCTGAAGGAGCTGTCCAATCACAACGAGCGTGTGGATGAGCGTAAGGGGGCCTTGGTGGAGCTGCTGAAGATCACACGAGAGGACAGCCTGGCCGTGTGGGACGAACACTTCAAGACCATCCTCCTACTGCTCCTggagacactgggagataaagaCCACACCATCCGGGCCCTGGCTCTGCGGGTACTGAAGGAGATCCTGAGAAACCAACCGGCCCGCTTCAAGAACTATGCAGAACTCACCATCATGAAGACCCTGGAGGCACACAAAGACTCCCACAAGGAGgtGGTGCGGGCAGCGGAGGAGGCTGCCTCCACCCTAGCCGGCTCCATCCACCCAGAGCAGTGTATCAAGGTGCTGTGTCCCATCGTCCAGACGGCTGACTACCCCATCAACCTGGCTGCCATCAAGATGCAGACCAAGGTGATCGAACGCATCACCAAGGAGTCCCTCCACCAGCTGCTGCCTGACATCATACCAGGACTACTGCAGGGCTATGACAACACGGAGAGTAGTGTTCGCAAAGCCAGTGTGTTCTGTCTGGTGGCCATCTACTCCGTGATTGGAGAAGAGCTCAAACCACACCTGCAGCTACTCACAGGCAGCAAGATGAAGCTGCTGAACTTGTACATCAAGAGGGCCCAGACGaccaacagcaacagcagcagttCCTCGGATGTGTCCTCACACAGCTAGCTGTAGGAGGGATCTGCCTGTCTATACTTTGCATCTGAATTAGGGGATATGgtgtgtgtcctaaatggcatcctattccctaaataggcCACTAcatttgggctctggtcaaaagtagtgcactatatagtgaatgttatgtcatttgggacacagtcatacagtaacagtcaaaagtttggacacacctactcattcaatggtttgtctttatttttactattttctatattgtagaataatagtgaagacatcaaaactatgcaataacacatatggaatcatgtagtaaccaaaaaagtgttcaacaaatcaaaattaaTTTTAGATTGTTCAAAATAgacaccttttgccttgatgacagctttgtacattcttagtattttctcaaccagcttcataaagaatgcttttccaacagtcttgaaggagttcccacgtatgctgagcacttgttggctgcttttccttcactctgtggtccaactcatcccaaaccatctcaattgggttgaggtcatgtgattgtggaggccaggtcaagttcttgaaattttccacattgactgaccttcatgtcttaaagtaaggatggactgtcgtttctttgATGATTATATTTGAGCCCATAATAtgggcttggtcttttaccaaatagggctatcttctgtataccaaccctaccttgtcacaacacaactgattggcacaaacgcattataaaggaaagaaattccagaaatgtacttttaacaaggcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314946 lncRNA upstream 10373 57488214 ~ 57489144 (+) True G277445
TU314845 lncRNA upstream 57008 57441561 ~ 57442509 (+) True G277353
TU314844 lncRNA upstream 60205 57437086 ~ 57439312 (+) True G277352
TU314899 lncRNA upstream 83741 57414571 ~ 57415776 (+) True G277404
TU314892 lncRNA upstream 88042 57411173 ~ 57411475 (+) True G277400
TU314906 lncRNA downstream 218 57551400 ~ 57554278 (+) True clasp1a
TU314975 lncRNA downstream 7675 57558857 ~ 57559122 (+) True G277473
TU314977 lncRNA downstream 14962 57566144 ~ 57566458 (+) True G277475
TU314958 lncRNA downstream 20021 57571203 ~ 57571395 (+) False LOC110520283
TU314957 lncRNA downstream 20062 57571244 ~ 57571427 (+) True LOC110520283
LOC110520280 mRNA upstream 64243 57427425 ~ 57435274 (+) True LOC110520280
XR_005051427.1 mRNA upstream 65247 57434145 ~ 57434270 (+) True LOC118936397
XR_005051426.1 mRNA upstream 68824 57430568 ~ 57430693 (+) True LOC118964378
XM_021597468.2 mRNA upstream 93894 57335037 ~ 57405623 (+) False LOC110520279
XM_021597467.2 mRNA upstream 93894 57358875 ~ 57405623 (+) False LOC110520279
XM_021597471.2 mRNA downstream 20038 57571220 ~ 57589227 (+) False LOC110520283
XM_021597472.2 mRNA downstream 20038 57571220 ~ 57589227 (+) False LOC110520283
NM_001165088.2 mRNA downstream 399917 57951099 ~ 57969839 (+) True ralb
XR_005051240.1 mRNA downstream 424883 57976065 ~ 57978805 (+) True LOC118964187
XM_036965026.1 mRNA downstream 488675 58039857 ~ 58470590 (+) False LOC110504354
TU314786 other upstream 234625 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 1583384 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 1583384 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 1583384 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 1598774 55900194 ~ 55900743 (+) True G275542
TU315509 other downstream 238552 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 2501534 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 2501534 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 2736206 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 3189057 60740239 ~ 60757350 (+) True G281591

Expression Profile