RNA id: TU314906


Basic Information

Item Value
RNA id TU314906
length 2879
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id clasp1a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57446143 ~ 57554278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacccttgaatgagtaggtgtgtccaaacttttgactggtaccgtagTTGTGCCTCTTCCAGACCTCTCCATTCCTGagattctctctccttcaccacgGTGGATTCCTCCGGATGACCCTCTGCTTCAATCACAACTTTTGCTCCCGgccttttctttattttctctccAGTGAACTTGTCCTTTCATTTGTCATCGAATTTCTTTCTCCCGTTTTGtcaattttttaaattgtttataTATATGTGAGGTCTGGGTATAGGGTGGTTTAACGCTTTTTAAATTCTCTATAAGAACGAATGGGGGTCAAGCTACTGTACATCTACGGCAACACTCtatttcactgacatttttcatAATGTAACTTTGGATGCTTATTTGGTTGAGCATTCAAAAAGTAACAGGAGGGGAAAGGCAAAACCAGGAGTTATGATATGGTCTAATAACAATGATATATAATAGCAAATAATGCCCTGAAATTGATTCAGAAGAAAAGAAAAAAGCATCCCTTTaaaatgcagttgtactgtaGTTGGACGAATGAATTCCTTCACATTTAACAAGGAAGGCCAATTGAGGTCGGAATACCTCTTTCCCATGGGGGACCACATGGCATTCAGTTTGTGATAAACTAAGAATCATATGGCTGGCCCAGTGATGATACAAAGCCCTGATATAAACCAGGTTGAAGACTTGTGTTTGGGAACATTGAAAACCAAATATGGCAGCAATTGAAATTAGTAGAATGAGTAGTAATCTCACGTTTTTCTTTATAAACTGAGGGATGATGTTATGAAATCCTATAAAAAGTGTTAGAAGAAATGTTTGAACATTTTAATTTGAACATTTTAAGTTAGCCAATTATGAAGCCTCACTTACGCCCAAGTAGGCAAACGTTATGTTTTATTATTATCTATTCGTTTGTGAGAAATTACGGCGGAAACATTGTCAGAGACCAATTTGCAGCTAATAGCTTGGTTCTAACCTGAGAAATAAATACtgtattaaataaaaatacagtaaaatacatttgataaaatgtacatttttttcaACACAAAATGATCACTAAAATGTAAAGCTGTTCAAAAtgttttaactttttttttgtgaaataaggatagagagaaagatgcaACTGTGTTTCTGTCTAACTCGTAATAAATTATGGTTAACTCCATTTGGATTTGTCAAATAAAGAACATTATTTAGGGAAGAAAAGAcaataatacataaaaataaaaaaaatcaagtGAAATTTAATGGATCCCTCCCAACTCCTAAAATTAGAATGAGTGTTCTCAACCTACTTAATGACCATGTTGCTAATGATGTCAGACACTGAATGAATGGGCCATTATCAGTCATGACAACAAACAATCCAgtgtcacatttatttattcccccctttttccacctgtggagCCAGATTATGGCATTTAACTTGTTAACCGTGACGCTGCTTATAACGTGTACTTGTCTGATAAGTAAAAACCCTACACTTGTAGATAATGCGAAAGTTACATGCTCGGTTTCGGAAGGAGATCAGTGCATTCATTGAGACAGAATCTAAAGAAACTAcaggctggtttcccagacacagattcatTCTAGTCCTGGATTAGAAACTATTCTCAATACAGAATATCAATTGGAAGTGTGTTTATAatcttaatctgtgtccaggaaaccggccCTACCAGGCCTTATGTTCATTTTCCTAAATAATGTTTGGATCACTTGTACTGTTGAAAGGAGAGGATGGATGTACATACAGAAGTTCTCAGATCTTAAAAATGTGAAACCATTACCCCATGAACTACACTCAACAGGCTTGCAAACAGATACAATCATATTCACCATGATGATGCAAATATAAGTTGTTTATAATAATACAGTATTACACACACCTTCCCTTCACCTAACTACAGCTTCTGCAATAAAGAAAATACCATGATGAGCAAACTAAGTATTTTGTACATAAGTTTTGATCAATCACCGCTTCGCAACTTTcatgaaatgaaataaaaaggTTGGCTGTCTCACTTTGTTGCTCGTTAGCGAATTAGCTTGCATGTTTTTGGGCACACATCCAATTTGTGCTGCCTCAAATCGATGGGTCCTGTTTTGGCTGTTGAAGTGCACTTGTAACCTCATCAGTTTGGCCAGCCTTTACAACAATTAAGTTATTATTTTGGTAGGGGAGGAAGACACCTGGCTGCAATACACTCACTGAGTTCTGTAAATTGACCAAAACATAACAGTCTCTGTTTGCCCTAAACAATTATGTACACTGTACAGGGCATAACCGGCTCAAAATGCCAAGCAGACATGCACTGTAAAAGCATCCTAGTTCTCCTTTAGTAAAGTACTACATATTTGGGCATGTGGCTTTATAAGGTACGCTGTGTGTGTGCCTTGGTACTTAAGTACAGTATCTGGCAACGATTCCCATCTGCTTAACAGTTTCAAAtcgcaaaataaatgtttttgttttcaaATGGGGCCCATCATCCTTTTACAAGTATGTTAATTGTATTTAATTGTGTGTAAGGGAGAAAGCCAGTCATTTTGGTACAGACATAAAGTACTTTATTGGCTGATGACTCATGAAGATCTGGCTCATTTACAGTCCACATGACCTACTGATTGATGATGGTATTCCTAGAAATCTGTTCACTATGCATGTTAttatttgtgtttgttttgtcatgtaagattcatatctgtatttatataattgttttatttagaTTTTCATGACAACTTGTACAGAAGGGTTTCGTTAACATCCACCTGTGATAGATGATTTGCAACAATGTACATTTGTTTGCTCTAGAAATAAACAACCATGAAAGTTGATTCACCTTTTTATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314907 lncRNA upstream 163 57550707 ~ 57551237 (+) False clasp1a
TU314940 lncRNA upstream 45923 57480128 ~ 57505477 (+) True G277441
TU314946 lncRNA upstream 62256 57488214 ~ 57489144 (+) True G277445
TU314845 lncRNA upstream 108891 57441561 ~ 57442509 (+) True G277353
TU314844 lncRNA upstream 112088 57437086 ~ 57439312 (+) True G277352
TU314975 lncRNA downstream 4579 57558857 ~ 57559122 (+) True G277473
TU314977 lncRNA downstream 11866 57566144 ~ 57566458 (+) True G277475
TU314958 lncRNA downstream 16925 57571203 ~ 57571395 (+) False LOC110520283
TU314957 lncRNA downstream 16966 57571244 ~ 57571427 (+) True LOC110520283
TU314961 lncRNA downstream 36413 57590691 ~ 57591256 (+) True G277459
XM_036974759.1 mRNA upstream 218 57446143 ~ 57551182 (+) False clasp1a
XM_036974753.1 mRNA upstream 218 57446144 ~ 57551182 (+) False clasp1a
XM_036974751.1 mRNA upstream 218 57446145 ~ 57551182 (+) False clasp1a
XM_036974752.1 mRNA upstream 218 57446145 ~ 57551182 (+) False clasp1a
XM_036974756.1 mRNA upstream 218 57446145 ~ 57551182 (+) False clasp1a
XM_021597471.2 mRNA downstream 16942 57571220 ~ 57589227 (+) False LOC110520283
XM_021597472.2 mRNA downstream 16942 57571220 ~ 57589227 (+) False LOC110520283
NM_001165088.2 mRNA downstream 396821 57951099 ~ 57969839 (+) True ralb
XR_005051240.1 mRNA downstream 421787 57976065 ~ 57978805 (+) True LOC118964187
XM_036965026.1 mRNA downstream 485579 58039857 ~ 58470590 (+) False LOC110504354
TU314786 other upstream 286508 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 1635267 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 1635267 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 1635267 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 1650657 55900194 ~ 55900743 (+) True G275542
TU315509 other downstream 235456 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 2498438 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 2498438 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 2733110 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 3185961 60740239 ~ 60757350 (+) True G281591

Expression Profile