RNA id: XM_021597471.2


Basic Information

Item Value
RNA id XM_021597471.2
length 5314
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110520283
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57571203 ~ 57589227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCACCCCGGCACGCAGTTTCAGTATTACACACAATcgtttaaaataaaaatgttaattaACAAAGTCTTTGAAAATCTTTCATATTTCGATAATAGTGTTCGATTGAATTTGTCAACAACAACTTCATATTTTACACTAATTCAGTGAAGTCAGATGTTTGCCATCAGACCGCCCTCTCCGTGACATTATTTGAGTCTTCTGAATCCTTCCAGATCTTTCtctcaaaaaaatattttcagcACCAGACCATCGTTTCTTCTCACCACAAAGACCAGCAAACTATGTCATGttgaaagctgtcatcaaaactATAATCACGAGTGCAACACGGCAGCACAGCCTTTATGCAGGTATGGTGAAGACAGAAAGAAATTGGCTTCTCTATAAGTTTGACTGAAGAACCACTTCAGTGAAAAGGATTCAATGGATTTCAGTATGGCTGAACAAGTCGAAATCAAGAATGAAGATGACAAACCAACTGACCTGCCAGATGAGATTAAGGATTGGAATAAACATCATGTGAAACAATGGGCTCTCAACGAGGCTTGTGTGGATGGTGAATCTGCAAATATCTTGCTTCAGCAGAACATTAATGGGCCCAGTCTTTTACTTTTAGAAAAATCTGATTTACTAGAGGTGGGTGTCACACTGGGGCCTGCAAAGTTGATCATTCACAAGAGGGATGAACATTTGAAATTTAAGAAAGAGCAGTTGAGTAGCCCAACAACAAATCAGTCTGGGAGACCGTGCAAGCCGTACCCTTTTCATCGACACCATGATGCCTGCAGATACAAGGCGAACAGCGTTCTTGATGTAACAGAATCCGGTGCATCAGACTATATCGAACCCTGTCATGAATATAAAGGATACATCCATATGTCAGAGGCAGCTGTGGAGAGCAAAATGGAAAAGTTCACTGATGAGGTTATTCGATTTGCAGCAGCCTGCATGAATAGCCGCACTAATGGCACCATACATTTTGGAGTTGGTGACAAGCCAGACTTTGTTCATGGGCAAGTTTTGGGAGTTAGCGTCCCGGACAAAGAGGCATATGTCAATGCTCTGCCACAAGCCATTGAGGGTCATTTTGAGTATAGACATATCCAGACAGCCAAGATGTGCATCAAACCACCTCGATTTGTTGAGGTTCTCAATCCTGATATGACATCCTCAGAGAAGTATGTGATAGAAGTGGACATTGTGCCAGACTTTGTGATCTGTCAAGAGAACTTCTATCACGTTTTCCACTTGGATACAAGGAAATCAAAGAGGAAGTCCAAAAGcaaagaaacagagaaagaggagaaaaaaCTCTTCTTCATTCGTGATCACAGCAGCAGCAGGGATCTCCTTGCACTAACCACTTTTGCCAAGCCAAAGGAAGAATACAATAGGTTTCTCGACGATGTGCCACAGCTGTCACTGCTAAGAAAACAGGCGGAGGAAAATCGCCTTAGTGTGGTTAAAAGTAGTGTCCAGGGCTCCAGACTAAGTGAAATGATAACAGGTGGATCCCAATCCTTAGACAAGTCCCACTTTGAGCGGTATTTGATAGTGACAAACAAATCACATTTAGTTCAATTGGAATCCCTGGGATTTATTCCTGAACTAAACCCAACTGCTGTTTTGGACTTTGACCCTGAGTCGGCAAAACATGGATTGATGAAGCACTTTGAAGACCAGAGTACAATAAATATCCACTTGCCAGTACAATATAAAATCACAGAGGCTGTCGAGGACATTGCTAGCAAGCTAAAACTGACTCGAAACACCAGCTGGATCCTCTGCAATGGGGGTATCGAAAGAGAGAGACCCTCAGATGTAGATGACTGGTTAATAGAGAAAGGAGCGTCTGTACGAAATGTGATTTCATTTCTGTGTCGGAAAGATGTGCTACCACACAAGAGATTCCTGGTTATTTTTATATTGCTATCTACTGTGAGTGAGAAAATGGACCCTCTGCTTGAGACCTTCAGCACATTCTGGCAGGAGCTCAGAGGAACAGAGCAAATACTTTGCATCTGTGAAAATGAAGAAGCATTCACCTGCTGGAGGGACCTGATTGAATCCCGCTATGGATTAGACATTAAAGCAAGATCAATATATCAGCTCAGTTTTGCTGAAGTTAACGGCACCGTCCTCAGTCTGTGGTCAGACAACCGGAAATCCAGCCGTTTCCTACCCTGTGGAGGAGGCAGCAAAGTGATGTTAAAAAAGAAAGAAGAGGGCAGCCTAGACATCCTGAATGTTCTGTGTGTGAATCAGTGTGAGGGAGGAAATGAAGACAAGGCCATCATACAGGAGAAGTTCTACAAAGGAGGAAAGGTGTTATGGTGGAACTTCTATTTCTCTGAGCAGCCAGGATCCATGCCATTCATCAAACGGGACAAGTTTGACTTCATCATGAACACTGTCCTACCAGCTTTGAGCTCTTTGAGAAAAGCTtgtgtgtccttcaaacttttgCATGTCCCAGGATGTGGTGGAACTACACTAGCCATGCATATATTATGGGCACTGAAAGACAAGTTCCGTTGTGCTGTTCTGAGGGACAGAACCGCGGATCATGTTGTTGTTGCCGAGCAGGTGGTCAAGCTACTGATGTATGAGACAACAGAACAATCGTCCCGGATTCCTGTGTTGCTCATGCTAGATGACTTTGAGGAGATGGATGACGCATATGATTTGCAGCAGCTCATTGAGAAGGAATGTGTCAAGAAGGACATTGGATCTAGGTCCCCGCAGGTCATTCTACTCAATTGCATGAGGGCTGAGTCTTGGGAGAAGACTGAATCAACTGAAGACACTGTGTTCATTGGCAATAACCTCTCTGAAATGGAGCAGAGGCAGTTCGAGAAAAAACTGGAGGAGATTGAGAAGACCTACAAGAATGCAGACACATTCTACGCTTTCATGATCATGAAGAAGAACTTTTCACCCGAGTATATACAGGGTGTGGCTCGCAACACCCTAAAGAGCTTCAACATAAATCACAAACATGCACAACTCATTGCTGTTCTGGTCTTGTTGAATGTCTACTGCAAGGGTGCAacactctcagtctctctctgtgaagAGTTTCTTGGCCTCCAGACCAAGCCTTATAGTGGGTCCTCTGATGTTAAGGCTGGATTTGGGAAGTTTTCCACTCTAGTGACCTGCTGCACAGAGGAGGCTAAGGTTGTATTCGAGGCAGTGAGAATGATCCACTCAAGCATGGCCGTGCACTGTTTGAAGGAGCTTACAACCACATACAGTGTAACCAAAGCTGAGATCACTGATCTACTGCTCACCACAGACAAGCTTTATGAGTGCATACAGGGCAAAGATAAACTCATGAAGGATGTTCACACCATGTTAGTGAAAAGACATCACTCAGTCAAGGGTGAAGATTCTCAATTTTCACCTCTCATCCAGGATATTGCAAAGGAGACACCAGGTGTTGAAGAAAATGTTCTATTCAATGCAGCCAAGCGCTTTGAAAAAGATGCTGTCATCTCTCAGCTTCTTGCCAGATACCAATACCTGAAGAAAAGGGATTTCAGGGAGGCAAAGGACTGGGCAAAGAATGCGAAAGATCTTTCCAGAGATAACTCCTACATTTCTGACACATCTGCACAAGTGATCAAGCATGAGCTAAAGAGTGAAATACAAAGTGACAAAGAAGATCCCATAAGACCTGAAAGGCTCAAAGGCTATCTTAGAATGGCCCAGTCAGCAACAGAGGCCTTCAGGGATACACAGGAAATTGCAAAGAAGGAGGCTACTCTGAGAGTacaaaacaagagagacaacagcCCTTTCAACACTGCAGGGTGCCTTGGAGAAATTCAGGTTGCAGTCATCATCATCGAAATACTGGAAAAATGTCCAGTGTTTTCTTCAGGCAATTGCCATCATGATATTCTGAGTGAAGTTCTGTCTGGCAGATTTACAATCCAAGATGTTGCGAGGAATGATTCCAAACATCACAAACATGCCTTGTATTACTGCATTCTCCGTGAATTTGAAGATCTTTTGTACAACCTCAGACATAACATGAAGAGGCATTTTGATTTTCTTGACAGCTTTCATGTCAATTTGGGTCCCAGGTTCACCCTGAAAGACAGTCGAGAGGAAAGAACTCGACAGGAGCTCTTCCGGTGCTTTTATCAATACAGTGACCTCTTTTGCAAGACAGATTCCACAGAATTAATGAAAAACAAGAACCTGAGCATCATGCTCCAAATTCACAAGGCAAGGCAATTTTTGGAGATGAGAAAAGCTGATACTTACTCTGGGATTCTAAATTGTCTCTCCAATGTTACCTCAACTGACATGATGGTAAAGATAGTCCGGCAGTATGACTTCATTCTGAGTAAAACTCCTGAAAGGAGCGTGAGAGAAATGGTAAATTTCATCTATGCCAATGTTGTGCTAAGCTGTGTCAAACCTGAATCTCAACACCTTCGCCCGTATAAGATCCTCATTGATCTTCTTTGCCAAGTTCTTCAAGGTCAAATCCCATATGGTGAGACCTTGGCATTGCACTTCATTGCTGTAGCTCTGCTGTGGCCACAACAGATCGTTATGTCACAAACTGTGGAGTCTCAGAAGTTGGGAAGCTATGTGTCACAGATGAGGACATCATTCTGGAACGAGATGAAATCGGTGTTGAATGGAAAGTCGCCTGTTGTCCATTTCTTCTTGGGGAAGAAACAGGGCTATGACCGTCTTATCCACCTTGGAGAACTTGAGAGGTGTGTAAGCCCACAAGAAAACTTTGCTTCGCTCTGGGAAAATGGCAAAATATGGAAGCATGAGAGGGTCAAGGAGCTCCTTTGCAGGGTGACAGGATGGGTTCAAAGAAAAttaattttggcagttacctggaACACAGGCTCAAAGATCGAAGTCATTCCAATGTTCAAAAGCCAGCTTTGTGGAAAAATCGAGGGAGAAAATGTGTCTTTTGTCATTGGTTTCTCAATGAAGGGCCCACTGGCTTTTGACATATATTGAACATCTAGAACAGCGTAACGGATGCAATCCCGGCCAAGTGTTAAAAATTGGTTCAACATTGAATCCTATTATAAACCTACTGTTAACATTAACTAACACTCACACTTTATCCCCCCTTTTACCCTTTTaactctgactttgctgatagtaAATTTTTCCTCAAAGTAGCTAACTATGACTGATATGAGGCTGTTCCATGtagctattttaagatgaatgcactaactgtgtctgttaaatgactaaaatgtacactaccggtcaaaagttttagaacacctactcattcaagggtttttctttattttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314977 lncRNA upstream 4762 57566144 ~ 57566458 (+) True G277475
TU314975 lncRNA upstream 12098 57558857 ~ 57559122 (+) True G277473
TU314909 lncRNA upstream 16942 57550707 ~ 57554278 (+) False clasp1a
TU314906 lncRNA upstream 16942 57551400 ~ 57554278 (+) True clasp1a
TU314907 lncRNA upstream 19983 57550707 ~ 57551237 (+) False clasp1a
TU314961 lncRNA downstream 1464 57590691 ~ 57591256 (+) True G277459
TU314959 lncRNA downstream 9175 57598402 ~ 57601408 (+) True G277457
TU315002 lncRNA downstream 38885 57628112 ~ 57671106 (+) True G277500
TU315044 lncRNA downstream 108285 57697512 ~ 57697852 (+) True G277538
TU315046 lncRNA downstream 110086 57699313 ~ 57699605 (+) True G277540
XM_036974759.1 mRNA upstream 20038 57446143 ~ 57551182 (+) False clasp1a
XM_036974753.1 mRNA upstream 20038 57446144 ~ 57551182 (+) False clasp1a
XM_036974751.1 mRNA upstream 20038 57446145 ~ 57551182 (+) False clasp1a
XM_036974752.1 mRNA upstream 20038 57446145 ~ 57551182 (+) False clasp1a
XM_036974756.1 mRNA upstream 20038 57446145 ~ 57551182 (+) False clasp1a
NM_001165088.2 mRNA downstream 361872 57951099 ~ 57969839 (+) True ralb
XR_005051240.1 mRNA downstream 386838 57976065 ~ 57978805 (+) True LOC118964187
XM_036965026.1 mRNA downstream 450630 58039857 ~ 58470590 (+) False LOC110504354
XM_021597491.2 mRNA downstream 1347250 58936477 ~ 58948624 (+) True pofut2
XM_021597492.2 mRNA downstream 1372413 58961640 ~ 59064792 (+) True abca12
TU314786 other upstream 306328 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 1655087 55915329 ~ 55916133 (+) False G275553
TU312838 other upstream 1655087 55915512 ~ 55916133 (+) False G275553
TU312836 other upstream 1655087 55915744 ~ 55916133 (+) False G275553
TU312821 other upstream 1670477 55900194 ~ 55900743 (+) True G275542
TU315509 other downstream 200507 57789734 ~ 57790332 (+) True G277973
TU317976 other downstream 2463489 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 2463489 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 2698161 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 3151012 60740239 ~ 60757350 (+) True G281591

Expression Profile