RNA id: LOC118964362



Basic Information


Item Value
RNA id LOC118964362
length 143
RNA type mRNA
GC content 0.33
exon number 1
gene id LOC118964362
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58502557 ~ 58502699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCTCTTTTctgccttttggctaagatcaagtgtagtatatGTTCTTattaacaaaaaaaataactAAAAAGAGATAGAGAAGGCACCGAACTGCTTTAATAACTTGTAGTAATTTCAAGGTCACATCAGAGTAAGATCCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU316521 lncRNA downstream 5000 58497259 ~ 58497557 (-) True G278946
TU316516 lncRNA downstream 6854 58495492 ~ 58495703 (-) True G278941
TU316492 lncRNA downstream 23997 58478205 ~ 58478560 (-) True G278917
TU316365 lncRNA downstream 174916 58326472 ~ 58327641 (-) True G278797
TU315765 lncRNA downstream 513928 57935265 ~ 57988629 (-) True G278220
TU316650 lncRNA upstream 70280 58572979 ~ 58573239 (-) True G279071
TU316812 lncRNA upstream 174048 58676747 ~ 58677044 (-) True G279231
TU316826 lncRNA upstream 185284 58687983 ~ 58688198 (-) True G279243
TU316852 lncRNA upstream 197787 58700486 ~ 58701324 (-) True G279269
TU316910 lncRNA upstream 207825 58710524 ~ 58710779 (-) True G279318
XM_021597478.2 mRNA downstream 559245 57934070 ~ 57943312 (-) False si:dkey-3d4.3
XM_021597477.2 mRNA downstream 559251 57934071 ~ 57943306 (-) True si:dkey-3d4.3
XM_021597476.2 mRNA downstream 583251 57909607 ~ 57919306 (-) True LOC110520286
XM_021597475.2 mRNA downstream 767640 57632140 ~ 57734917 (-) False LOC110520285
XM_036974790.1 mRNA downstream 893531 57598546 ~ 57609026 (-) False LOC110520284
XM_036974792.1 mRNA upstream 241202 58743901 ~ 58761334 (-) False LOC110520288
XM_036974791.1 mRNA upstream 241202 58743901 ~ 58761841 (-) True LOC110520288
XM_021597480.2 mRNA upstream 263728 58766427 ~ 58774628 (-) True LOC110520289
XM_036974795.1 mRNA upstream 272932 58775631 ~ 58862354 (-) False LOC110520290
XM_021597489.2 mRNA upstream 272932 58775631 ~ 58911510 (-) False LOC110520290
TU315276 other downstream 913374 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 1098982 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 1204795 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 3091070 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 4211876 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 6466850 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 6511560 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 6552001 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 6552001 65054700 ~ 65075985 (-) True G286638

Expression Profile