RNA id: XM_036974792.1


Basic Information

Item Value
RNA id XM_036974792.1
length 1979
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110520288
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58743901 ~ 58761841 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAATAGCTAGCTAAGTAGCGTGGGTGTCTTTTATGAGTAATCAAAAGATTCAGAAGCCAACGCTTACAGGCCAGCGTTTTAAAACTAGGAAGAGAGATGAAAAGAAGGTGTTTGACCCTACTCAGTTTCAGGAAACCATTGTACAAGGTCTGAACCAAACTGGCAGTGATCTTGACGCTGTTGCGAAATTTCTTGATGCCTCTGGTGCCAAGCTTGACTACCGCCGCTATGCTGAGACACTCTTCGACATCCTGGTGGCTGGCGGAATGTTGGCCCCAGGGGGTACCTTATCAGATGACTTGACCCGTACAGAGTTCTGTCTCTTTACAGCCCAAGAAGACCTGGAGACCATGCAAGCTTATGCTCAGGTTTTCAACAAGCTTATAAGGCGCTACAAGTACCTGGAGAAAGGTTTCGAAGAGGAGATCAAGAAGTTGCTGCTGTTCCTAAAGGGGTTCACTGAGTCTGAGCGCAACAAGCTGGCCATGTTGACTGGCATCCTGCTAGCCAACGGCAACATCTCAGCCTCTATCCTCAACAGCCTCTACAACGAGAACCTTGTCAAAGAAGGTGTCTCTGCAGCCTTTGCTGTGAAACTTTTCAAATCCTGGATCCATGAGAAGGACATCAACTCTGTGGCCGGAAGTCTCCGGAAGGTCGGCATGGATAACAGGCTTCTGGAGCTGTTTCCTGCCAACAAGCGGAGCTGTGAGCACTTCTCTAAGTACTTCACAGATGCTGGACTCAAGGAGCTGTCAGACTTTGCCAGGAACCAGCAGGCCATCGGGTCCCGTAAGGAGCTTCAGAAGGAGCTCCAGGAACAGATGGAGCGCGGGGATGCTTTCAAAGACATCATTGCCTCAGCCAGGGAGGAGATGAAGAAAAACAACATCTCAGAGCAGACCATGATCGGCATCGTGTGGACCAGCGTTATGAGCTATGTGGAGTGGAACAAGAAAGAGGAGCTGGTTACAGAACAAGCCATCAAACACTTGAAGCAATACAGCCCACTGCTGAAGGCGTTCACATCCCAGGGAGCCTCTGAGATTCTGCTGCTGGTGAAGATGCAGGAGTACTGCTATGACAACATCCATTTCATGAACTCCTTCCAGAAGATTGTGGTCCTGCTCTACAAAGCGGATGTTTTGAGTGAGGAGGCCATTCTGAAGTGGTACACCGAGGCCCACGTTGCCAAAGGAAGAAGTGTTTTCCTGGAACAGATGAAAAAGTTTGTGGAGTGGCTCAAGAACGCGGAGGAAGAATCTGAGTCCGAGGAGGAAGAGGCTGACTAAAAGACCTCAAGCCAAATCCAAGGctcgtttttattttttagaacaaCATTAATAACATATTTTTTTCTATTCTACCTCCTCAACAACCATAATGTCTAGATGTAATTTAAGGGCTTTTACATCATGTTCATTTTTTTAACTTAAAAGTTTACACTTCTGGATAGTAAGAATCATGAATAGATTTTCCCTTGACACACTTAATAATTCCTCATTTGAAGGGAAAGACATGTTGCCACATTTTAAAACCACCCCCCTTAACTCACCCAGCCCCTTCTGTTGGTATGTATCTGTGTTTTATGAAAGAATGTTCCCTTTAAAAATGGACTATTCATTCCGCTGGCATGATTCATAGCGATCTTTTACTGCAGTTGGACTCTTATTTGCCAGTGGTTGATACATAAATGCTCACTATTTAACtcctttttgtatttttatttagccAGTGTGACATGTCCAGATAATCTGATTTTAAATTGAATGGCCAGGCTTGAACTCTCTTGTCCACACTATATGAAGTTCTAGCTACCAGTCTACTGAAAAGGTGCTGGTGGTGTAAACTGTAATCGCTCTCTGACATCTTCTGTAACACTGTgccagattctagatttaattttggttaTTGTTGTAATTTCTTTACCCTGATATCAATTTGACTTTTTAAAATAAAGTTCAGTACTAGTTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316942 lncRNA downstream 3205 58740480 ~ 58740696 (-) True G279344
TU316936 lncRNA downstream 9666 58734000 ~ 58734235 (-) True G279338
TU316935 lncRNA downstream 9967 58733642 ~ 58733934 (-) True G279337
TU316920 lncRNA downstream 23862 58719550 ~ 58720039 (-) True G279328
TU316910 lncRNA downstream 33122 58710524 ~ 58710779 (-) True G279318
TU317109 lncRNA upstream 43836 58805170 ~ 58805443 (-) True G279501
TU317199 lncRNA upstream 191185 58952519 ~ 58952867 (-) True G279581
TU317323 lncRNA upstream 208844 58970178 ~ 58970954 (-) True G279700
TU317484 lncRNA upstream 410613 59171947 ~ 59172147 (-) True G279856
TU317533 lncRNA upstream 445997 59207331 ~ 59207762 (-) True G279905
LOC118964362 mRNA downstream 241202 58502557 ~ 58502699 (-) True LOC118964362
XM_021597478.2 mRNA downstream 800589 57934070 ~ 57943312 (-) False si:dkey-3d4.3
XM_021597477.2 mRNA downstream 800595 57934071 ~ 57943306 (-) True si:dkey-3d4.3
XM_021597476.2 mRNA downstream 824595 57909607 ~ 57919306 (-) True LOC110520286
XM_021597475.2 mRNA downstream 1008984 57632140 ~ 57734917 (-) False LOC110520285
XM_021597480.2 mRNA upstream 5093 58766427 ~ 58774628 (-) True LOC110520289
XM_036974795.1 mRNA upstream 14297 58775631 ~ 58862354 (-) False LOC110520290
XM_021597489.2 mRNA upstream 14297 58775631 ~ 58911510 (-) False LOC110520290
XM_021597490.2 mRNA upstream 14297 58775631 ~ 58911510 (-) False LOC110520290
XM_021597487.2 mRNA upstream 14297 58775631 ~ 58932250 (-) False LOC110520290
TU315276 other downstream 1154718 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 1340326 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 1446139 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 3332414 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 3953241 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 6208215 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 6252925 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 6293366 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 6293366 65054700 ~ 65075985 (-) True G286638

Expression Profile