RNA id: XM_021597480.2


Basic Information

Item Value
RNA id XM_021597480.2
length 2201
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110520289
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58766427 ~ 58774628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTCCCTACTGGTGGGAAATATATCCTTATCAAAAAAGTCTGCTAAGTCTATCTGGCGTCGATAGAGAGACGTGCTAGTTCATAAGTAATCATGGCAACACGGTGGGGAATCTGCAGTGCAGGGAAAATCAGCCACGACTTTTCAGTTGCTCTGAGGACCCTACCTCACGACGACCACCAGATTGTGGCTGTTGCTGCTCGGAATCTCCATCATGCACaagagtttgccaaaaagcacaaCATCCCAAGAGTCTATGGGAGCTATGAGGAGCTAGCAAAAGACTCAGACATAGATGTGGTGTATGTGGGAACCATCCACTCTCACCACCTGAGCACAGGTAAGCTCTTCTTGACCTCCCATAAGAACGTGCTCATAGAGAAACCCCTGGCCATGAATCTAAGAGAGGTACTGGAGCTCACCAACACAGCCAAGGAGAATGATGTATTTCTGATGGAGGCCATCTGGACTCGTTTCTTCCCTGTGTCTGTAGAGGTGGGCAGGCTGCTGGGCCAGGGTGAGGTGGGAGAGGTCCAGATGGTAAGGGCCGACCTGGGAGcccccctcacacacatccctcgccTGACCCATAGAGAGCTGGGTGGAGGGGCACTACTGGACCTGGGGATCTACTGCCTGCAGTTTGTCTTCATGGTGTTCAATGGGGAGAGACCGGAGTCCATCCAAGCCATGGGATACTGTATTGACACAGGAGTGGATGGAACAGTAGTTTTGGTCTTAAAGTTCTCTGGGAACAGAATGGCTGTTTGCACGTGCTCCATCACGATGATGCTGACAAATGATGCTGTTATCACTGGGACCAAGGGGACCATCAAGGTCCCCAACCACATGTGGTGTCCTACGAGCCTGGAGGTGAATGGAGAGGTGACGCAATACCCTCTCCCTGAGCCCAGCCTTCCCCTCAACTTCATTCACAGTACTGGGCTGCGCTACGAAGCAGAGGAGGTCAGGCAGTGTCTGCTTAAAGAGCTGAAGGAGAGCTCTGGAATGCCTTGGTCACACTCACACCTTCTCGCCGAGGTCATGGATGAAGCCAGAAGACAAGTGGGAGTGACATATAATCAAGACAGCGTCCAATGAGAAATAATGCAACCCAAGTCCCCCTTTCTCAGTCATGGATGCACTCTCTACCGATGCTAGTCAGCAGGTGACTTCGGTCCAATGAATGCTATAGGTTATGCTGTTATGATGGTTAAACTAAGGGGGTGTGCTTGGGGCGGCTCCCTCTGATCTGCCTGGTTATAATGGtctgtctcccaaatggcaccatattccctttatggTGCACACCAGTGCATGagtcctggtcaaagtagtgaacagggtgccatttgggatgcagacatggTCTCAGGAGCTTTTAATAACTTATGAGGCTAATCGGCCTATGATGTTTATTTCATGGGGATTTTTTTTATGGATATGTGCCAGTTATGTTCAGCTTGCCAGCATCCATCCTATTGAGTTTGCTGTTTTGCTTGTTTGACCTCAAGCGATTGTCCAGTCACTTAGTAGGTAATAGGTTACAACAGAACAGACTACGTGTTACCTTGCTAGTTAGAGAGAACATTGATCTCCAGATTGGAGTTGAGTGCAATACTCCTCATTCTGCTAATGTAACATAGGCTACCACCACTGCAGGGGAGATGATCAGCAGGCCTAttgcttatttccttattttTCTATAATTTTGGAAAGTGACTAATTATGGCCACAACAAGGTCAAGGTCATCCAAGGTCACACAGAGGTTCTTAGCAGTCTGGGAGGTTGTGTCACAGACCGAGTCTCCGTGCCATAGAAATTCAGACATAAAACCAGACGTTTATTGAAGTTGTGTATTGATTGCATTGATGAGGACGCTCATGAAATAATTGTAAAGATATCCCCATTAGTTCACCTGTAAAAGAGAGATATGCATGTttagtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcacagaTATataagctgatgtaagaagggctgtataaatccatttgatttttgatttttttttagttTAGTCGGAACGTTGGTAATTGGTTTTAGAGCGCAAATGTTAATATAAGGATGTTGTTTTAAAGCTAGAACTAGCGACTACTAATGTAATGAAATGAGATCACCATTTATAtggataaataaatgttttacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316942 lncRNA downstream 25731 58740480 ~ 58740696 (-) True G279344
TU316936 lncRNA downstream 32192 58734000 ~ 58734235 (-) True G279338
TU316935 lncRNA downstream 32493 58733642 ~ 58733934 (-) True G279337
TU316920 lncRNA downstream 46388 58719550 ~ 58720039 (-) True G279328
TU316910 lncRNA downstream 55648 58710524 ~ 58710779 (-) True G279318
TU317109 lncRNA upstream 30542 58805170 ~ 58805443 (-) True G279501
TU317199 lncRNA upstream 177891 58952519 ~ 58952867 (-) True G279581
TU317323 lncRNA upstream 195550 58970178 ~ 58970954 (-) True G279700
TU317484 lncRNA upstream 397319 59171947 ~ 59172147 (-) True G279856
TU317533 lncRNA upstream 432703 59207331 ~ 59207762 (-) True G279905
XM_036974791.1 mRNA downstream 4586 58743901 ~ 58761841 (-) True LOC110520288
XM_036974792.1 mRNA downstream 5093 58743901 ~ 58761334 (-) False LOC110520288
LOC118964362 mRNA downstream 263728 58502557 ~ 58502699 (-) True LOC118964362
XM_021597478.2 mRNA downstream 823115 57934070 ~ 57943312 (-) False si:dkey-3d4.3
XM_021597477.2 mRNA downstream 823121 57934071 ~ 57943306 (-) True si:dkey-3d4.3
XM_036974795.1 mRNA upstream 1003 58775631 ~ 58862354 (-) False LOC110520290
XM_021597489.2 mRNA upstream 1003 58775631 ~ 58911510 (-) False LOC110520290
XM_021597490.2 mRNA upstream 1003 58775631 ~ 58911510 (-) False LOC110520290
XM_021597487.2 mRNA upstream 1003 58775631 ~ 58932250 (-) False LOC110520290
XM_021597488.2 mRNA upstream 1003 58775631 ~ 58932250 (-) False LOC110520290
TU315276 other downstream 1177244 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 1362852 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 1468665 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 3354940 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 3939947 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 6194921 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 6239631 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 6280072 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 6280072 65054700 ~ 65075985 (-) True G286638

Expression Profile