RNA id: XM_021597488.2


Basic Information

Item Value
RNA id XM_021597488.2
length 5646
RNA type mRNA
GC content 0.48
exon number 30
gene id LOC110520290
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58775631 ~ 58932254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCCCTTTGCCCGTAGTCCCTATCGGTTAGTGCTCCAGTGGAAGTCTTCATAGCCGGATGAGACACGCGTGCAGAATTTAGGGATAGAGGAAACTTTTTTCATCTGAAGAGATATCTCCGGGATTCTATATTGTCCTCCAGAGTGTATTTAGGGGACAACATTTCCAATTCGGAGGGGGGACTGCTGATTCCAAGATGGAGGTGAAGACGTCACTTCTGGACAACATGATAGGGGTGGGGGACATGGTCCTGCTAGAACCCCTCAACGAAGACTCCTTCATCGTGAACCTGAGGAACCGCTTCGACCACAATGAGATCTATACGTACATCGGCAGTGTGGTGATCTCCATGAACCCCTACAGGTCTCTCCCCATCTACACACCACAGAAGGTGGAGGAGTATCGCAACAGGAACTTCTACGAGCTCAGCCCACACATCTATGCCCTGGCAGATGAGGCCTACCGTTCTCTGAGGGACCAGGATAAAGACCAGTGTATCCTCATCACAGGAGAGAGTGGAGCTGGAAAGACTGAGGCCAGTAAGCTGGTGATGTCATATGTGGCGGCGGTGTGTGGGAAGGGCCAGGAGGTGAACAAGGTGAAGGAGCAGCTGCTGCAGTCCAATCCTGTGCTGGAGGCTTTTGGGAATGCTAAAACAATGAGAAATGACAACTCATCCCGATTTGGGAAATACATGGACATTGAGTTTGACTTCAAGGGAGACCCTTTGGGTGGAGTTATTAGCAACTATCTACTGGAGAAGTCCAGGGTTTGCAAGCAgccgagaggagagagaaacttCCACATCTTCTACCAGCTTCTTTCTGGAGCCTCGGATGATACCCTGATGAAGCTGAAGTTGGACAGAGATTTCAGTAAATACAACTACCTGAGTCTGGATTCAGCCAACGTCAATGGGCTGGATGATGCAGCAAGCTTCAGGACCGTCAGGAATGCCATGCAGATTGTGGGCTTCATGGAGGCTGAGGTGCAGTCGGTTCTGGAGCTGGTGGCTGCCGTCCTCAAACTGGGGAACATTGAGTTCAAACCAGAGTCCAGGGTCAACGGCTTTGACGAGAGCAGGGTCAAGGACAAGAATGACCTGAAGGAGATGTGTGAGCTGTTGGGGATTGAGCAGTCTGTGCTGGAGAGGGCTTTCAGCTACCGCACCGTGGAAGCCAAGATGGAGAAGATGTCTACCACGCTCAACGTGGCCCAGGCCTACTATGCCCGTGATGCCCTGGCCAAAAACCTCTACAGCCGTCTGTTCAGCTGGCTGGTCACCAGGATCAATGAAAGCATCAAGGCTCAAGCAAAAACGCGCCACAAGGTGATGGGCGTCCTGGACATCTATGGTTTTGAAATCTTCGAGGAGGGCGACAACAGCTTTGAACAGTTCATCATCAACTACTGCAATGAGAAACTGCAGCAGATATTCATCGAACTGACGCTACGCGAAGAGCAGGAGGAGTATATCAGAGAGGACATTGAATGGACCAACATAGAGTATTTCAACAACGCCATTATCTGTGACCTCATTGAGAATAACCAGAATGGAATCTTGGCCATGTTGGATGAGGAGTGCCTGCGGCCAGGCACAGTGACTGACGACACCTTCCTAGACAAGCTGAACACCATCTGTGCTGAGCACCAGCACTTCGAGAGCCGCCTCAACAAGAACTCCAAGTTCCTGACAGACCACAGCCTGCCACACAGCTGCTTCCGCATTCAACATTATGCTGGGAAGGTGCTGTACCGTGTGGAGGGCTTTGTAGACAAGAACAATGACCTGCTGTACAGAGACCTGTCCCAGGCCATGTACAAGGCCACCCACAGCCTAATGAGACAGCTGTTTCCTGAGGGAAACCCTGCTAAGGTCAACCTGAAGAGACCCCCCACTGCAGGCTTCCAGTTCAAGGCCTCTGTAGGGGTACTCATGAAGAACCTGCAGACCAAAAACCCCAACTACATCAGGTGCATCAAGCCCAACGATAAGAAGGTAGCCCACATCTTCACCGACTCACTAGTGTGTCACCAGGTGCGTTACCTGGGCCTGGTGGAGAATGTGCGCGTGAGGAGGGCTGGCTACGCCTTCCGCCAGCCCTATGAGTCCTGTCTGGAGCGATACAAGATGCTCTGCAAGAAGACCTGGCCCCACTGGAGAGGACCCGCCAGGGACGGAGTGGAGGTGCTGCTGACAGATTGTTCTGTTCCAACTGAGGAGTTTGCCTACGGACGCTCCAAGATCTTCATCAGGAACCCCAGAACGCTGTTcactctggaggagaggaggagggcgtgTCTGGAGGACCTGGCCACCCTGATCCAGAAGATCTACCGCGGGTGGAAGTCTCGTACTCACTTTCTGCTGCTGAAGAAGAGCCAGGTGGTGGTGGCAGCCTGGTACCGCAGATATGCACAACAAAATAAATATCAGAAGATCAAGAGTGCTACACTAGTGATGCAGTCCTTCGTCAGAGGGTGGAAGGCCCGCAACATCTTGCGGCAACTGAAATACGAGAAGAGATGCAAGGAGGCTGTGACTACCATTGCAGCGTACTGGCACGGGACTCAGGTccgcagggagtacaggaagttCTTTAGAGCCAACGCTGGCAAGAAGATCTACGACTTCACCATCCAGAGAATCatGCAGAAGTACTTCCTTGGTCTGAAGACCACTACAATGTCCCCTATGGACAACACCTGGCCGGCAAAGCCTTATGGCTTCCTGGAGGGAGCTCACACTCAGCTCAGGAGGATCTTCCACCTCTGGAGGTGCAAGAAATACCGGGGCCAGTTCACAGAGGAGAAGAAGGCTGTGTATGAGGAGAAACTTGAGGCCAGTGAGATCTTCAAGGACAAGAAGGCTCTGTACCCCAGCAGTGTCAGCCAGCCTTTCAAGGGAGACTATCTGGAGATCCAGAAGAACCCCAAGTACCAGAAGCTGAACAGTGCTATGGAGGAGAAGGTGCTACTGGCTGACTTGGTGAACAAGATCAACAGGGCCAACGGCAAGGGGTCGCCGAGGCTCTTCCTGCTGACCAAAAGCAACTTTGTCCTGGCTGACCAGAAGACGGGCCAGGTGAAGGCTAGCGTGCCGCTGCCAGACCTCGCTAGCGTGTCGGTCAGCACCCAGAGTGACGGCTTCTTCGCCCTCAAGCTCAAAGAGggctctgcttCAGCTTCGAAAGGTGACTTCCTGCTGAGCAGTGAGCATCTTATAGAGATCATCACCAAACTCCACCGCATAGGGACCACTGCTGCAGACAGGGACCAGATCAACATTGACATCTCAGACGAGTTCCTGGTGCAGTTCAAGCAGGACAAGGTGTGTGTCAAGTTCATCCAGGGGGGGCCTAAGAACGGAAACAGTGCTGCCTGCAAACGCAAGAACAACCGCCTACTGGAGGTGTCTGTGCCATCACCATAGAGATGACAAAGCCTCCTATAATACTTAGTTGTCATGACAGTTCACAATCAGGCCTAAACTCCAGCCCCCGCCCCCAATGACTGTGCAATTACTCtgctttttgttttttgttgttatttccTCTATTCAGAATCCTTGCATCACTGTAACATTTAACTGCGCTGACACTTTTGGTAGAGAGTGAAAGACCCATAGGATTGCATGGCGATAGGGTTATAGGAGAGAAAGatgaacaaacaaaaaatattttactAGTTTTAAAAGATGTGGGTGAAAGAAAGAAGTGCTCTCTTGTCAATGGAGCACAAGATATTTCCAGTCAGATGATACTGATTGTTGAGCTTGGGAAAGCTAATATGCAGGCTGTGGGGTGTGGTATCAAGCCATACCCATGTTCAGAGATCTGTAAAGGGCAAAGAAAGAAAGTGCTGACGAGACACACCCCTGCACTAGATTTGGGTCCTCATCGGTTTATCTGTTTAAGCTCTCAAATGGCAACTCAATAGATCAACGATGACCAGAGAGCTTTCAGGATTGCTCTAACGTTTTCTCTGAAAGTTAAACTATGACTGCACTTGTAATGTTCACCTGGGTGAGTTAAAATTTGAAAAGATGGTGATTAATAGTCAAAATATTATCTGGGTTGTTTTTGTTTTCCTTTGCTGACACTCACACACCTGACTACAGTGGGTGGTCAAGTACAAGAATCAACACTTGTCAAATGTGATTTGCCAAGTGATCGATTGTCAACCACTTAGTATCCATAATAACTTCCGTGTGCCATTCAGCCGCCCTACTCTGTGAGGTGCCATGACATGCTGCATGTATCCATCTGTAGTCATCTAGTCAGGTCTTGGAcactaacaaaaaaacaaaaagttGAAGGGTCCCTACTCAGTTTATAAGTAAATGCCAAAAACAAAGTTGAAAGGGGGCCTCAATCAACTAGGACCAAGACTTTATTTGAAAACACTGCACACTTCTCTCACTCTCCAGTTGTCCTTAAAGTACTTTACATCTCTAAACTTTACCACAGGAATTGAGATGGACCCCAGGGTTCCCAAGTCTACCTTGATAACTATCCCAGATTCCATACTGATCAGTCTTTTTAGAGCCACAAGGCTGCTTGTTTTCAATGGTCCTCTTGTTTGAAATTGAAGGGAAATGGAACTCTTTGCCTACAACACTGCCTAGGCTAGGCTACACCATCTCAAGCATCCCTCCACCCTTTGGCATGAGAGTAATAAAATAGTAAAAGGATGCAGCATGGCAACAGACAGGACATAAGATTGAGTCCTACATTCTGTGACTGACATTTCTCAAACGCATGCTGTagagacacactcactcactcactgactgtaTCATACACATCAACTGTAAATGCTAAAACAGACCCAGCATGGATGGAGTATGTACGGATAAATTATAGTGTCCTCATGCTAGTTCTCTTATTGCTGTGCTGCAGAAATATCTATAAATATTTGCCATTGCAATGTGGgctgttatatatattttttgtagccCCACTCTGGCTAATAATAAATGCAGTGTTTTTCTTGGGATTGTGCGTATGGCCATGTAGTATATTCTTGGGAAGTTTTTTCAGAAATCTAGCAATCACAGCTTCACTGTCTGCTCTGCCTGTGTATGAATGTGAtatactttacacacacacacaagccaatGTCACTTCAGTCATTGCTCTATTTGGAAGTATATTTAATGATATTCTTTATCGGGATGTTTTAGTGGGGGGTTTTGTACTGTTGACTTCAAGGTTAAACCAATGGGTTCTCTGGTGGTGGCAATGTGGAGGTGGAAGCTCAGCCAAACTGCTCTAGATCACATACCTATAGATTACTGGTGTACCTTAAAATAAATAACTTTTTTACATGTTTTTGTAATTCCACAGGTGGACTTGAGGAATGATTGTTGTTTTTTTCCTTCAACGGGGGAAGATGTTGAACTGAGTCGATGCATGTTTGTGCTTCTCAGTTCTGTACAGTTTGAGATTTCAATGCAGTTTGCTATAACCACCTCTGTGTTTGTATTTGAAGTAAAATACGAAAATAAACTCAATGATGTATGCATTCTTGTTGTGTGCCTAATGTAACCTGCGCTGCGAGATGGAGAACATGGAAGTGTTTCAGTCCTCAATGTAACAAATTTACAAGTAATGCTTTTCAAATTAAAAAAGCAATAAATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU316942 lncRNA downstream 34935 58740480 ~ 58740696 (-) True G279344
TU316936 lncRNA downstream 41396 58734000 ~ 58734235 (-) True G279338
TU316935 lncRNA downstream 41697 58733642 ~ 58733934 (-) True G279337
TU316920 lncRNA downstream 55592 58719550 ~ 58720039 (-) True G279328
TU316910 lncRNA downstream 64852 58710524 ~ 58710779 (-) True G279318
TU317199 lncRNA upstream 20269 58952519 ~ 58952867 (-) True G279581
TU317323 lncRNA upstream 37928 58970178 ~ 58970954 (-) True G279700
TU317484 lncRNA upstream 239697 59171947 ~ 59172147 (-) True G279856
TU317533 lncRNA upstream 275081 59207331 ~ 59207762 (-) True G279905
TU317770 lncRNA upstream 439781 59372031 ~ 59372427 (-) True G280128
XM_021597480.2 mRNA downstream 1003 58766427 ~ 58774628 (-) True LOC110520289
XM_036974791.1 mRNA downstream 13790 58743901 ~ 58761841 (-) True LOC110520288
XM_036974792.1 mRNA downstream 14297 58743901 ~ 58761334 (-) False LOC110520288
LOC118964362 mRNA downstream 272932 58502557 ~ 58502699 (-) True LOC118964362
XM_021597477.2 mRNA downstream 832325 57934071 ~ 57943306 (-) True si:dkey-3d4.3
XM_021597494.2 mRNA upstream 183166 59115416 ~ 59144833 (-) False vwc2l
XM_021597493.2 mRNA upstream 183166 59115416 ~ 59144836 (-) True vwc2l
NM_001124709.1 mRNA upstream 1233728 60165978 ~ 60253769 (-) True cps1
XM_036974806.1 mRNA upstream 1360153 60292403 ~ 60342883 (-) False map2
XM_036974807.1 mRNA upstream 1360153 60292403 ~ 60342883 (-) False map2
TU315276 other downstream 1186448 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 1372056 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 1477869 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 3364144 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 3782325 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 6037299 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 6082009 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 6122450 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 6122450 65054700 ~ 65075985 (-) True G286638

Expression Profile