RNA id: XM_021597491.2


Basic Information

Item Value
RNA id XM_021597491.2
length 1694
RNA type mRNA
GC content 0.49
exon number 9
gene id pofut2
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 58936477 ~ 58948624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCTTCACACTCCCGGAAGTGCGTTGCTTAAATAAAAATGGCGGACCACAGATTTAGCAGAGGTTTCAAATCGCCAGTGTTGTGGCTTTTTTCTGTGCAATCTTTAATCAAATTGTGTTTGTCTATTCTCGCGTTGAGCGCTGTAGTCGTCGAATGTCAAATTGAAGATACATTCCGAGCAGGAAATAGCGTTTTTTCACCGGCTGTTGCAGCAGCACGGGATCTACGGTACCTGCTTTACGACATCAACCCCCCAGAGGGTTTCAACCTTCGTCGGGACGTGTACATTCGCATGGCATCCCTGGTGAAGACCCTGAGGAGACACAGTGACTGGGTGCTGGTGCTGCCCCCCTGGGGACGTCTTTACCACTGGCAGAGCCCAGACATCCACCAGATCAGGATCCCCTGGGGAGAGTTCTTCAGCCTCACCAGCCTGCAGGGCAACGTGCCTGTCATAGAGTACGAGGAGTTTATAGCTGAGTCTGGAGGCCCATTTATTGAACAGGTCCTGGTGCTACAGAACTACGCTGAAGGGTGGACTGACGGGAAATGGGAGGAGAAAGTGGACCAGCGACCCTGCGTTGAACGGTTATTGTACTCCAAAGACAAACAGGGTTATTACAGAGGATGGTTTTGGGGCTATGAGGAAACCAGGGGTGTGAACGTCACTTGTCTGTCAGCTCAGGGCCACGCCTCCATCCTGGCACCACTCCTGCAGAACAACATCACATCAACTTCTGTGATGTTGGACAAAGCAGAGACTGTCCTCCATGATCACTACGCAGGAAAGGACTACTGGGATACTCGCCGCAGTATGGTCTTTTCCAAACACCTGCGTCTCCTAGGGGACGAGTTCCGTGCAAAGTACCTGAACTCCACAGACGAGCAGGACCAGACCGTATACAACGAGGACTGGACTCGCATTAAGAATAAGCTGGGTTCTGCCAGAGGGGGGCCGTACCTGGGTGTCCACCTGAGAAGGAAGGATTTTATCTGGGGTCACAGAGAGGATGTGCCCAGCCTCAAAGGAGCTGTCAAGAAGATCAGGGACCTCATGAAGAAAAACAAACTAGACAGAGTCTTTGTTGCCACTGACGCAGATGAGGAAGAGCTGGAGGAGCTGAAGAAGATATTACCAGAGATTACACGCTTTGAACCCACCTGGGAGGACCTGGAACTACTCAAGGACGGGGGCGTGGCTATCGTCGACCAATGGATCTGCGCACATGCCAGGTATTTTATCGGAACATCTGTGTCGACCTTCTCTTTCCGGATCCACGAGGAGAGAGAGATTCTGGGATTCGACCCCAAAACTACCTACAACCGCTTCTGTGGGGACAGCGAGAAGGAGTGTGAACAGCCCACACACTGGAAAATAGTTTACTGATGCAATGACGTGGCACCGCTCTCAACAGCTCTCAAAGAACATGCCAATTGCAGTGTTAAAGTGGAGCTTTGTTATTTGTATATATACATTTGAAgacggacgtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatgtcttgttaacaaactgtagttctggcaagtcggttaggacatctactttgtgcatgacacaacaaatttttccaacaattgtttacagacagattatttcactgtatcacaattccagtgggtcagaagtttacatacactaaattg

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317085 lncRNA upstream 2781 58933384 ~ 58933696 (+) True G279481
TU316988 lncRNA upstream 106169 58823855 ~ 58830308 (+) True G279385
TU316963 lncRNA upstream 135086 58778970 ~ 58801391 (+) True G279365
TU316883 lncRNA upstream 174558 58743907 ~ 58761919 (+) True G279297
TU316882 lncRNA upstream 187076 58743907 ~ 58749401 (+) False G279297
TU317216 lncRNA downstream 104148 59052772 ~ 59055118 (+) True G279597
TU317483 lncRNA downstream 223045 59171669 ~ 59171914 (+) True G279855
TU317518 lncRNA downstream 249809 59198433 ~ 59198651 (+) True G279890
TU317525 lncRNA downstream 254328 59202952 ~ 59203160 (+) True G279897
TU317539 lncRNA downstream 263855 59212479 ~ 59212718 (+) True G279911
XM_036965026.1 mRNA upstream 465887 58039857 ~ 58470590 (+) False LOC110504354
XR_005051240.1 mRNA upstream 957672 57976065 ~ 57978805 (+) True LOC118964187
NM_001165088.2 mRNA upstream 966638 57951099 ~ 57969839 (+) True ralb
XM_021597471.2 mRNA upstream 1347250 57571220 ~ 57589227 (+) False LOC110520283
XM_021597472.2 mRNA upstream 1347250 57571220 ~ 57589227 (+) False LOC110520283
XM_021597492.2 mRNA downstream 13016 58961640 ~ 59064792 (+) True abca12
XR_005039918.1 mRNA downstream 144520 59093144 ~ 59094205 (+) True LOC118944557
XR_002470749.2 mRNA downstream 564821 59513445 ~ 59515061 (+) True LOC110505376
XM_021597499.2 mRNA downstream 608054 59556678 ~ 59581956 (+) False ikzf2
XM_021597497.2 mRNA downstream 608444 59557068 ~ 59581956 (+) False ikzf2
TU315509 other upstream 1146145 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 1671585 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 3020344 55915329 ~ 55916133 (+) False G275553
TU317976 other downstream 1104092 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 1104092 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 1338764 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 1791615 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 1942900 60891524 ~ 60893778 (+) False G281714

Expression Profile