RNA id: XM_021597493.2


Basic Information

Item Value
RNA id XM_021597493.2
length 6127
RNA type mRNA
GC content 0.44
exon number 5
gene id vwc2l
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 59115416 ~ 59144836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATCGCATGTCTAATAATAGCCAAGCCCCGGTAGGCTACAGCATACTCTGCACCGTTAGTCAAATGCAGGTCAGTGGGGTTCTTTGGATGGATCGCATCTGTTTAATTCAATTCCAGAATATCTATAATGTATTATCTTTGGTTCTGCCTCAATCATCTTTATTTTGACTTTGAATGCAGACTGGCAGTGGCCCCTACGGGCAATCATACGGAGAGCAGATATTATGTGGAATTGTGCAGATCTTAAATACTGTGAAATTACTGTGTAGTCTATTCTGAAAGAAACAGAATGTCACATTATGCAACATCCGTTCTCTACAAGTTATACAATTGTGAAGTCTATGTTTCGGTTGTTTGCTGTAAGAATGGCAATGTGTGTGTGATCACCCAGCTAACATAGAGATCACAGGCTACCGTAGCAGAAATAACCTCTGCACATGGAGAAACTGTGCTCTCTGGTTTTAATGAAATCCGCTACATGTGATATTTGAGAGTGCAAACCCCATCCAGCTATTTCGTTTGATTCAGTTTTATTGGGAGCATGTCGGTGGAATAAAATGCCACTTCAAGTTCCCTGATGAGTTCTCATTTTGCCTTTCCCTTCCTGGTCTGGGGAGCAACGCAAGATGGGGAAAACTCTCGAATCTCTGCGTGCTCAGTGGGACCCTCGACTGAACAGCGACAGTGCTGAAGACACCGCTGTCTGCCGCTGTTCCGCTCTGCCGCTGTCCGTGGTCCTGAAGTAGAGTGCGTCGTCTTGCTCACAAGGGTCATGAGAAGCGCCGCTGTTCCTGCATGCTCCTCTAAACAACATAGGCCGTATAGGCGATGACTTGATTCGGTGCTTTTTCGCCTCAACTTATTCAACTAACGAGCATCAAGCTGTGATTGTTACTATGTTCTCAACTTCTTCCCGGTGAGTGCGCACGGAAAAGTGTGGAAGATAAAACGTATATTTTGGCAAACATTTAACTTTCCCTCGCGAAAAGGAGATGTTAGGTGTAAATGTCGTATCTTTTAGATGTTTGTTCTCCTCTTAAAGTTGTATCTTCCGGATCTCTGGTGTATTATCTTTTCCATTGCCATGCACGCGCTGCTGGATGTATGCAACAAGACCGAATGGTGTTTTTGATCTGCAGCAATTGGAAGTTGATTGAAATGAACCTCACTGCCGTGGACGTCTAGGATCAGCCTATTGACAACAATAGAGGGAATTATAATTTTTCGAGTCTTATTTTTCACACGTGAACTGCCTATTGTGGTGTTGTTATCTTAATCTCTGGGAAATAAGGGATAATCATGTATCAGACCGATTTGTGTGTGCATATCACATCGCTCGCGCTGCTCCAAAGGCATCGGTACCGACAATGGTCTAGTATCTAACTGCTTTTACGCACAACATTAGCAACTAAAGGGGGATTATCTTTTTATCTGGAGCCTGGTGGTTTTATCGAATTGTTCATCTGGAAGTTGTTGTGTCCTGTGTTTAATCCGTTCTACCGGTTTGGATCTCTGTTGATCCCGACTCCTACCAGTGGAACCAGGCATTTCAACGCGGAATACCGCGGCGAAGGATGGGCCCTCTCTTTCCAATGACCTGCGTTGTCCTCCTCGCCCTCCACGCCACTGTGTCACCAGCCTCCTTCAGTCCCGAGGATTACGCCGCGGACGAGGCGGAGTTAACTGCCAACAGCGACACCATAATTTTCGACGACTACCGGGGGAAAGTTTGCGTGGACGACAGTGGCTTCGTTTACAAACTGGGGGAACGTTTCTTCCCGGGACACTCGAACTGCCCGTGCGTTTGCACCGAGGACGGGCCGGTGTGCGACCAGCCAGAGTGCCCCAAGATACACCCGAAGTGCACAAAAGTGGAGCACAATGGATGTTGTCCAGAATGCAAGGAGGTTAAAAACTTTTGTGAATACCGGGGAAAAACTTACAAGATCCTGGAGGAATTTAAGGGTTCCCCGTCCGACGAGGAAGGGACCAGTCCGCCCATCGTGGCTCCCGCCTCCGCGCCTGTACTACCCCCGGCCCttcccccagcctcagccccagacTCTGCAGCGCAGCTCCAATCAAGAACCAGGAGATATAGGccttCGCCTTGTGAGTGGTGTCGCTGTGAACCAAATAACGAGGTGCACTGTGTGGTCTCTGACTGTGCCGTCCCAGAGTGTGTCAACCCAGTCTACGAGCCAGAACAGTGCTGTCCCATCTGTAAAAACGGTCCAAATTGCTTTGCCGGAACGACGATCATCCCAGCCGGTATTGAAGTGAAGGTGGACGACTGCACCATCTGCCGCTGTCACAATGGGGACTGGTGGAAGCCAGCACAGTGCCTGCGCCGGGAGTGCCTCAACGGCCAGACGTTGTCATAGAAACCCCTCCCGGGACAGTGTCGGTGATGTGCGGTCAGGGAGCGCTCCTGCCTGCTGCCGTGGCAAACCAACAATGCCCTCATCTTGTGTTATTGATATGATATGATGGACAGGACAGGAGCCCAATTCCTTGGCAACTTTGGCTAGGAGACTGCATAACTAGCTGAAATGAAAAGCTCTTGTACACAGTACCTACACACCACCACAACTTtaaacacagaggagaggagagagcaggaacTTTTATTGAGACTGTTTTTTCCCTGTTTTGACTGTGTGACTATATATATTTTCTGATAATTACTTCTTGCTTGTGCTGCTTATAAACACAATATATTTCATGAACTAATTTCCTCCTAACCGTTGGCACTGTTAAAATGCTCAGTTGTTTTCTGTAAGTCTGTAAGCTTGTTGtagctctcactcactcacttacagGTGTTTTGAAAATGAGATCTAGGAGGGTTGAACAGGACACAATGACCGGACAACCAGAAAGCACACAATTCATGGCGCTTTTAGAAAAAATGGGTCTGGTGTTTAAATCGAATAAGTGAGATGTCTTCATCATGCCGCTCCAGTGTGATTTACAATGGTCACCCAAGGATATCACTCACAGCTCTTGGCTTCTCACTTCTTGTATGATCTCTGTTtgagtcaataacaaaagttcatTCTTGGGGATGGGGTCACTGAAATTAATGACATACAATGTCAGCATCCCGATGTGTCATCTGGTCTGGCAAAAGCTGCATAACCACAAACAGATCCCCTCAGTTACAGTATTTACAACACAGAATATTATTGATGAGACTGTCTTTGAGGTGCTCCTCTCTGCATGGGGAGAATGGAGGTCAGTTTTATCCAATTTATCCAACCAATACATTAGTAAGTGATAAATCACTGGAAAAAGTAGAAAAGGGAACCAACTTTACTTACTACAGGAGTTGAAATAAGGTCTTTAGTTAGAAGCCATGCAACCCATAACAGAGGGGGTAAAAACTGCTCCAGCATCAATACACTACCGGGGCCATTCCTCTTGGCTTAATTGCCTTTATTGTTTTCCCTGACGGCCCAAACcaacaaaaaatattcctccgAGCGAACAGCTTGAACTTGTTATCTAAGCAATTAGCGAGCCAAGCAGCGGCCTGCTTTAATTTCCCTTAATCAAGGAGTATTCAGGCCGGGCCTCTCTGCTCTCAGCAGTACGTCGCCCGCCTTTCGTCTGTAGGCAGAAGCCAAGCACCAAGCACACTCGGCAAGAACTCTGAGAGAGACAAAGGGGAAATCTGCATATGTCTTCTTGATGCTTCAAAGCAAAGGAGcactcagacactcacacatatgcacacacacacaaatacttgtACGCAAACCCTCTCGTCCTCCAGAGGCCCATACACACAGCTTGCACAGTACTGGTAATTCCTTTTCAccttaaaacatgttgatacattGTACCCCAAGAAGAAGCACTGAAGCCAATAAGGCTCTCGCTGagatcaacaaaaaaaaagctcCTATCCTCCCGTTTTTAGATTACACAATAGATTGTTTGAGCTAATGCATTGCTTTGCCTATAAATTCCTATTGGTTTCATTATCACACTCCAACCAACTCCACCCAACCTGTGTAGCGTGCACAACACACGCTCTCTTTCTTTTTAAAATGATGAATACTAGTCATTAATTCGAAGGCGAATTTCCCACTAAGCACATGCAATTCATCACTGATACTTTTTGTATGTGTTTCAGTGAGAATCCATTCCTGTTAACCTTTTAGAAGCTATTCCTCCTGTTTGATGGATGAACTACTTAATAACGCCTTCCAGCTCCTGGTAATGAGACAGAAATGAACACAGGAGACCCCTGACTAGAGGTGTCGGAATAGAATATCACATagactacatcccaaatggcatcccatttcctttgggccctgatcaaaagtagtgcactatagagggaatagggtcccatttgggacacaaacaacATATACCTTACCTAACGAGCCGACCCTCCCAAACATATCTCTGTCTGCACTGCAGCCACAGTATTGTAGACTACATTCTGTTCTACTCAGCTGCCTGCAGTCTTATTATTATTGAATGATGGGGAATTCAAAAGATGAACGAATGAGGGAAGGGGACTTAAATTTAGATTGCATCATTATGGTTAGAGTTGCTCGAGTCATTTTTATCATGACCTTGTCTTGTGATGAATGAGTCAGTCATAATGAGAAGAGAGACTCCATCTCTCAAGCCAGAATACCTACACAGGCAATACACATCACTCTACAGGTCCATACATTGTATGAGACTCCGTGACACCTTTATCAGTCATCTCTTTTAATTAGGTCTATCATGGGCCTGATATCTGGGTCATTCATTTTTATGACTGGATATAGATTGTTTCGTCCTCCTTTATTATTTTGTGTATCTTGTGTAGAACGAGGCTGCTGGCTATCTTTTAATTTCTCGTCGTTTTTTTAGCCCTTTTAATGGTTGCTCTCAATGTAAAGAGCTTCATGATTTAGTAGTAGTGTGGGTTGTAGGGTCAGCTAACCTGTGATCCCTTAGTACCTCCCTCAAGCTCATGCAGAGCAGACCCTCCGGTCTTAGATCATGTTGAAATTACCCCTCTCACATTGATAACAACTCATTATGATACTTTCTCTCTATTAGCGTTGGCATTGTTGTTTGTCTCGTGAACATTTATGCAATGATGGAAGGAATGTCTTATTAGAGTAATGCAGAAGGACACATTCAAGAATGAAGGTTAATAAGGCAGTAGTCTCGTAATTGTTTTTAACACCAGTTACCACACAACTTCTTAAACGGGTTACAACAGGGAGCTTTCAGAGTGGTCCAACTGTACAGTGACCTTCCAGTTTGGTAGGAGAATATTCTGAAGTGTGCAGTAGATTTTGAATCCATCTCTGAGACCCCAGCTGGAGTGAAGAATTAGCCTTATTGAGCAATAGTTAAACAAATGTATCAAAAGATAGTCTGAGGGAGCAGTCAATATCCCTGTTCATTTTCTGTTCATAAAAGAGTCTGGTCTTTTGTGTGTTTCTGGCCTTGAAAGTCTAGCCTACTGCTCATGCACTCACTAGCCTGACAACCCACTCCAAACACTGCTCATTCACCGCCTGTCACCATGCTGTAAAGGTGTACCATACCATTGCTCTTTTCACGAGACACCGACTTATTGTAGCTGGACGCTATGAAAGATTGTTctattgcttttttttttttttttacagaaactcTTATATAAAGTGTGCCTGAAAACCAACAAGAGTACTATCTAATATGGAGAGAAAAACACTTAAACAATCAAACTGTATTATTACATGGGCACTGTGGGTTAGTCCTAAAGATTACACAAATGTTAACTCCTACTGTTATAATTTAAATGTTATATTGAATTAGAGCCagaaattataataataaaataaagacaggATTTGTTTGGAAGTACcaagacacacaaacacctctACACCATAGCTTAGAAGACAGTGGGTACATCTAATCAAACACTCCAGATGTTTATTCCAAATGAAATTAAACAACCCTTGGTGCCCTTCATGGTGTATAATAACTTGTAAATACCTTCAAAATGTATAATGTGTGTTCTGGAAATCAGAGGTGGAGAAAAGAAAATGTGTATTATTTATGAAGACAAAAACTATTTTGTTAAAGACTAAAAAATAAGTGTTATTATACAGCAAA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317323 lncRNA downstream 144462 58970178 ~ 58970954 (-) True G279700
TU317199 lncRNA downstream 162549 58952519 ~ 58952867 (-) True G279581
TU317109 lncRNA downstream 309973 58805170 ~ 58805443 (-) True G279501
TU316942 lncRNA downstream 374720 58740480 ~ 58740696 (-) True G279344
TU316936 lncRNA downstream 381181 58734000 ~ 58734235 (-) True G279338
TU317484 lncRNA upstream 27111 59171947 ~ 59172147 (-) True G279856
TU317533 lncRNA upstream 62495 59207331 ~ 59207762 (-) True G279905
TU317770 lncRNA upstream 227195 59372031 ~ 59372427 (-) True G280128
TU317781 lncRNA upstream 237182 59382018 ~ 59382228 (-) True G280139
TU317812 lncRNA upstream 268125 59412961 ~ 59413164 (-) True G280170
XM_021597482.2 mRNA downstream 183162 58775631 ~ 58932254 (-) True LOC110520290
XM_021597483.2 mRNA downstream 183163 58775631 ~ 58932253 (-) False LOC110520290
XM_021597484.2 mRNA downstream 183164 58775631 ~ 58932252 (-) False LOC110520290
XM_021597486.2 mRNA downstream 183164 58775631 ~ 58932252 (-) False LOC110520290
XM_021597485.2 mRNA downstream 183165 58775631 ~ 58932251 (-) False LOC110520290
NM_001124709.1 mRNA upstream 1021142 60165978 ~ 60253769 (-) True cps1
XM_036974806.1 mRNA upstream 1147567 60292403 ~ 60342883 (-) False map2
XM_036974807.1 mRNA upstream 1147567 60292403 ~ 60342883 (-) False map2
XM_021597504.2 mRNA upstream 1147567 60292403 ~ 60416303 (-) False map2
XM_036974797.1 mRNA upstream 1147567 60292403 ~ 60416303 (-) False map2
TU315276 other downstream 1526233 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 1711841 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 1817654 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 3703929 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 3569739 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 5824713 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 5869423 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 5909864 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 5909864 65054700 ~ 65075985 (-) True G286638

Expression Profile