RNA id: XM_021597499.2


Basic Information

Item Value
RNA id XM_021597499.2
length 2020
RNA type mRNA
GC content 0.54
exon number 8
gene id ikzf2
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 59556678 ~ 59581956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTAATATGGAGGAAGTATCGGCGGATTAACTGTTGCTGCCTGCGCcactactatattatattacagtgTGATCCAAGAAAGATATTCCAATGGGTGAAATGTGTAGGCTAGTCCTAATTTCTGAGCATAGGTGATTGGATTATTCAATCTCCTGCGTTTATAaagtaaagaaagaaagaaagaaaaacaatgCAACTCAGTGATGATATTTAGTTTACAAGGATAACGGTTACTCTGCTTTAATGACATATGCCCGTGGATAAACGCTCAATATCCGACCATTGATTCATCCAGACAATGCGATGCGTGGTGCTGTCTCCACGACATCCAGCGAGACAGCTCTCCACCAACTATGGAAACAGAGGCAACTGATGGATATTCTGCAAGTAATGGAGACTGCTCTCCCAGGAAGACAGAGAACTCTAGAATGTTGGTGGACCTGTCGGCAAACACACCCAATGCACAGCAGCCCCAGGGTCCTTATTCACCGACTGAACACACCAtcaaacaagaagaagagacagaagatGAAAGGCACAGGAGGACCACAGCTGAGGATATGGGACAAAGTGGGAAAGAGGAATCGGGATTGGAAGAGCCCATAATTGACAGCCCAAACAACCTACAGGAtggggtccctgggtcagatGGGTCATGTGACCCAGAAACTCGGCTGCCCAATGGTGATAGGCCGTTCCAGTGTAACCAGTGTGGTGTGTCGTTCACTCAGAAGGGCAATCTGTTGAGACACATCAAGCTGCACACGGGGGAGAAGCCCTTCAAATGCCCCTTCTGTAGCTACGCCTGCCGCCGTCGTGACGCACTCACAGGCCACCTACGCACACATTCAGTGGGTAAACCACACAAGTGTGACTACTGTGGGCGGAGCTACAAACAGAGGACATCATTGGAGGAGCATAAAGAGCGCTGCCATAACTACCTTGAGAGTGCTGGCATGGATCCCACCTCCGTCACTGGGCCTTATCCAGGTGAGGTCCCTAAAGAGCAGAGGCCCCTGGCGGAGGCCGCTGCCATGGCAACATTAAACCGGCCACCTGTCATTGAGAAACTGCAGAGTAATGTAGGGAAGAGGAAGAGTACCACTCCACAGAAGTTTGTGGGTGAGAAGATGATGCGTTACAGTTACCCGGAGCTGAGCTATGAGATGGGTCTGAAGTATGAGAAGGAGGCAGAGCTGATGCAGGCTCACATGATGGACCAGGCTATCAACAACGCCATCTCTTACCTGGGCTCTGACTCCCTGAGACCCCTGGTCCACCATCCCCACCCCCATGGTCCCCACGGTCCACAGCCGTCTCTTTCTATGGCCGAGGTGGTACCCATGGTCAACCCCCTCTTCCACCACGTCTACCCTCTGGGGTCAGGGCTGCGTATGGACCGACCAGGTGGCCGCGACGCCCCACCTCATCCTTCAcctctgccccctcctccccctgactTCCATCCTTCCTCCAACGGACCCATTGCCCTCACCAGACCCAAGCAGCACCACCCACAGGGTACCAAAGAGGAAAAAGAGTCTCCTAGCAACAGTGGGCTGGACTCGGCTGACTCTGCCCGGAGCAGCCCACAGGATAGAATGGGTTACCACTGGAACAACCCCCACCATCGTCCCAGATCCAGCCCAGCATATGGCGGCAGAGAGGAGGGACGAGGCGGGGCTGAGGTGGCCCAGGGAGGGGCGGCAGAGAGGCCTATAAGTCGGGAAGGAGTGCGTGTGTTTGGGCGAGAGGGGCGGAAGATGAGGGTGTTCCAGTGTGAACACTGCCGCATTCTCTTCCTGGACCACGTCATGTACACCATCCACATGGGTTGTCATGGTTACAGGGACCCACTGGAGTGCAACATCTGTGGCCACCGCAGTAAGGACCGCTATGAATTCTCATCTCACATCATCCGCGGGGAACACACCTTCAACTAGAGGGGTGGACTGGACAGGAGCCACCACTGGTCCCCGCCCCATCCCATCTCAGGACAGTGATGTTGAACTAACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317890 lncRNA upstream 79690 59474706 ~ 59476988 (+) True G280240
TU317810 lncRNA upstream 146598 59409672 ~ 59410080 (+) True G280168
TU317785 lncRNA upstream 168458 59387974 ~ 59388220 (+) True G280143
TU317784 lncRNA upstream 168935 59387523 ~ 59387743 (+) True G280142
TU317779 lncRNA upstream 175723 59380751 ~ 59380955 (+) True G280137
TU317986 lncRNA downstream 11174 59593130 ~ 59593400 (+) True G280324
TU317993 lncRNA downstream 25581 59607537 ~ 59691190 (+) True G280331
TU318635 lncRNA downstream 479010 60060966 ~ 60061230 (+) True G280950
TU318662 lncRNA downstream 506208 60088164 ~ 60088370 (+) True G280977
TU318680 lncRNA downstream 518240 60100196 ~ 60100412 (+) True G280994
XR_002470749.2 mRNA upstream 41617 59513445 ~ 59515061 (+) True LOC110505376
XR_005039918.1 mRNA upstream 462473 59093144 ~ 59094205 (+) True LOC118944557
XM_021597492.2 mRNA upstream 491886 58961640 ~ 59064792 (+) True abca12
XM_021597491.2 mRNA upstream 608054 58936477 ~ 58948624 (+) True pofut2
XM_036965026.1 mRNA upstream 1086088 58039857 ~ 58470590 (+) False LOC110504354
XM_036974796.1 mRNA downstream 288603 59870559 ~ 60052294 (+) True erbb4b
XR_005039919.1 mRNA downstream 685686 60267642 ~ 60269899 (+) True LOC110505381
XM_021581343.1 mRNA downstream 695289 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA downstream 695488 60277444 ~ 60286077 (+) True myl1
XR_005051347.1 mRNA downstream 800718 60382674 ~ 60383352 (+) True LOC118964303
TU315509 other upstream 1766346 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 2291786 57264567 ~ 57264892 (+) True G277296
TU312833 other upstream 3640545 55915329 ~ 55916133 (+) False G275553
TU317976 other downstream 470760 60052716 ~ 60054417 (+) False G280315
TU317977 other downstream 470760 60052716 ~ 60054417 (+) True G280315
TU318844 other downstream 705432 60287388 ~ 60290567 (+) True G281141
TU319365 other downstream 1158283 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 1309568 60891524 ~ 60893778 (+) False G281714

Expression Profile