RNA id: XM_036974806.1


Basic Information

Item Value
RNA id XM_036974806.1
length 4898
RNA type mRNA
GC content 0.56
exon number 16
gene id map2
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60292403 ~ 60416303 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccaccctgcGGTGAGGTGCAATCCTGCGTTTGGCAGTGTGTCTGACTCTGTGGCTGCCTCAGGTCTCTACTCAAGGGGAGTCTGTTTTCGCTTTGCTCtactggtctagtctggtctgaccAGTACAgaGCAAGTTTCTGCACGAATCGTGCAAGAGGTGACAGCAGAAGCAGTGGCAGTACTGAAGGGAGAACAGGAGACAAGACTGcagtcagTTGAAGACACGGCAAAcctgcccccctctcctcctccctcacctgctgctgaGCACTGCTTCAGACCCCGGGAGCAAGAGACTGTCGAGGCTCTTACAGATAActtcaaagaggaggaggaggaggaggaggaggaggaagaagtgtTGATgttggaggaggatgaggagatggaagGGGCAGCAGCAGAAATCGTGGCTGCTCTTGAGGAGCTGTGGAGTGGGGATGAGCCTGAGCCAGACGGCCCCCCAACCAAGCCCTTAGAACAGGCTGCGGCTGTAGGCGAGGCCCAGGCTGGGCCCCCTGTGCAGGCAGTGGCATTTAGTGCTGCTCTTGATGGCCCTaacgggagggaggaggaggttgaggaggaggTGGCAGTGcctgaggggaaggaggagagccTTGATGAAGACTTAAAGATGGAGAAACCAGGCAGTGAGAGTGGATGCCTCAGCCCAGACTTCACTGAACCAGAGTGTCCAGCTTTCTCCAGCGGGGACCACACAGCACCCCCCCTGTACCCCAAAACAGAAATGGCTTCTCCGTCCCCTTCCCTTTCTAACAGCCAGAGCCAAGCCAAAGAGCCTACCAAAATGTCTATACCAGATGAACCTAAAACAGTCTCAGAGAATCAGCCGTCAGTGGAAGTTCTTGAGTCCAGTAACCTCACAACGGGTGCAGTGTCTGGGTTCACTAGAGCTGGAGACAAAGATCAAGGTCAAGGTGTCTCCTCTGACTCTAACAAAGACAAATCTGGCATGTCGTCTTATTTCGAGACTTTGGCCCTGAAGGCAGATGAGGGATCCAAGGAGGCTCAAGCAGCAGAAGGTTATTATGAACTGAGCACCGCAGGTCAAGAGAAGAGCTTAGGGAGAAGCTCCCCAACAGTTACGTCACCCCCTGAGATCAACTACAGCATGTTGGCACAAACACAGTCAGTGGAGAAGAAGCCAGACACCAAGACGAGTCTGATGGGAGATCAAAAGGATACCTTACCGGCCCTGGACAGGAGCAACGAATGTAGGCTTTCCCCCGGGAAGTTGGCCCTGGATCAGAGAAGCTACTCTCTCAACATTACGATTGGATCGATGGATCCCAGTGGCCAGGGCCTACCTAGGAACTTCTCCCCACTCGCCACGGACATCATGTCTTTTACCAGTGGCAGTCTGGATGAGTCTGTCAACTATCTCCCAGTTACCACCCTGTCTGCAGAGAAGGTGCCCCCGCCTTTCCCTCCCCTGATCCTGGAGACGGCCGCCTCAGTCACGTCCGACTCCTCGTCTCCTCCCTACAACACAGGAGAGATCCCCGGCGAAAAGACCAGCCCCCAGGGGTCAGAGTCGCCAGAGTCTCCCTTTCCACCCAAATACTACTACAAAAATGGGACAGTCATGGCTCCTGACCTACCTGAGATGCTGGACCTTGCAGGCACCAGGTCTAGATTAGCTTCTGAGAACAATGACCCAGAGATCATGAGGAGGAAGTCTGTCCCTGCAGACGCCCAAGGCATTGGGAGTGACTCCCTGGCCAACCTGGTCCTGGGGGACCAGAATCAGAGCCAGAGTCTTGCCAAGAGTGAGAGCCAGCTGGAAGAGTTGGGTTACTGTGTGTTCAGTGAGTACTCAGGGCCCATGCCTTCCCCTGCTGACCTCCATAGTCCCATTGACTCCCCGCCCCAGCGCTTCACCCCTATGGCTCTGGAGGAAAAGATGGCAGAGGAAAAACTGAAGATCGAAGCTAGAGACAAACTAGCCGAAGACGAGAAGTCAAATCAGTTAACTGTGTGTGACGGTTCCAAAGAAAAGGAAGAAGCAAAACAAGTGGGACGGAAAGATTCCGCTTCAGAGGAAAAAGACAACAAAGAGATCAGCCATGAAAAATCTGCCATGGAGGACCAAAATGACAAACCGGCTTCTGCTCTGAAGTCAGCAGAGTCCTTTGTGACTCCTACGGTAATGGTCACACTGGATGAGGAGGGAAAGGCAGAGAACGAGGGACCAGAGACAGATGCTGAGATGGCTGCCTACGAGAGGCAGATCCGCCGGCTGGAGATGGAGGACAGGCCCCTGAGCATGGAGGAGGAGCGAGAGCTGCAGGAGTTAAGGGAGAAGGTGAAAGACAAGTTCTTGGTGCACCAGGAGGCATACGAGGAGGTGGATGCCGAAGATGTCTACCAACTGACTGGGGTTGCCAAGAACCGGATCAGCAGGCCCGCCAGGCCCTCCCCGGCCTCCTCCGTGGAGAGCaccacagaagaagagaaggTTCCAGTTATGGACACCGAGAAACCTAAACAGACGGGAGGTCAGACAACGCCTCCGAAGGTTGACTTCATGGCGACATCTCCGTCTGTGTCAGGTGGTGGTGTGAGCaccacagaagaagagaaggTTCCAGTTATGGACACCGAGAAACCTAAACAGACGGGAGGTCAGACAACGCCTCCGAAGGTTGACTTCATGGCGACATCTCCGTCTGTGTTGTCAGGTGGTGGTGTGAGCaccacagaagaagagaaggggaaAGTTAGCGAAGAGCAGCTGAAGAAGGAGCAGGTTGTAGAGGTCAAAGAAAATAACATAGAAGAAAAGAAAAAGGAAGATGGGGAGGAGGATAATATAGAGCAGGTGGTGGAACAGGAGGAAATCATGATAGAGATAAAACCAACAAATcctggagagaaagaagagaagttTGAGAAGGATATAATGAAAGacaaggaggaagaagaagaggaagatggtGAAGTTCTGGCAGGGGCAGGAGCAGCGGTGGATGACGTTCCAGAGCCCAGAGCTGCCATAGAGTCAGTGGTGACTGTAGAAGATGACTTTATCACTGTAGTCCAGACCATCGACGAGGGCGAGGAGCCAGGACACAGCGTGCGTTTCTCTGCTCCACCTGAGCCTGAGACACCACAGGCTCTCCacgagcaggaggaagaggaggaggaggaggagtcccAGGAGGTGGAGATCATGGAGGCAGCAAGTCTGGAGGAGGTGGGGGATGTCTCAGACGAGGTCTGTGAGAAGGAGTTGCAGGCCTCCCCAGAGAAGGAGGTGCAGACAGAGAccgagggacagacagagagctacGACAGAGACGAGACTACCATGGACGACTCAATCCTAGACAGCTCTTGGGTCGACACTCAAGACCTCTGCACTGTAGATATGGATGATGACAAGAGCATGGCTACAGAGCAGATCGAGCCCCTGAGAGCCGACCGGGTCCCAGCCCCACCAGTCAAGATGGAGAAGACTCCCCAACAGCAGAAGCAGGAGAAGCAGCCAGTAAATCACAAGGCTAAAGGGGGGCGGGTGAAAGCGCGCGAGGGGCACGTCTCCACACCAGAACGTAAACCCATTCACAAGCAGCCGGTCTATATCCCCAGGGAGGACGTCAAGAAGAAAAAAGCCGTGATTAAGAAGACTGAGCTGACCAAGAAAGCTGAGATGCGCTCCTCTCCATCTCGGAAGAGTGTGTTAAAGTCTACTGCGGTCCGACACTCGCGTCCTGCCCAGGCCCACCCCTGTGCTAGGAGGAAACCTACAGTGGGTGTACCAGAGGGTCGTCGGCCCCTCAGTGTTGCTAGACAGTCTCGGGATAGAGCCTCAGTGGAGCTTCATAGGCCCCGTCCCTCCTCGGTCGGGCCTCGTGACTCCCCAACACTACACAGACTGATAGACGTGGATGGTGGTTCTCAGAGCCCAAAGAGGTCATCCCTGCCGCGGCCTGCCTCGATCCTGAGCCGGCGTACCCACCACCACCCACACGACCAGGAGGAGAGCTCCACCTCAATCACCAGCTCCGGCTCCACCGCACCCCGCAGACCTACGTCGTTCCGTACAGAGGTCAGGGCGGAGCATAGAACAGGACGTGCCCCTAGTtggacagGCACACAGTCGATGCGTTCCCGCTCGCTGTGCAGCGGTCCCACCACACCCCGCACCCCAGGGTCCACAGCCATCACCCCTGGAACCCCTCCCAGCTACAGCTACTCCTGCCGCACACCCGGAACCCCTCGCACCCCCGGCACACCACGTTCACTCAGCCTGCTGCAGGAGAAGAAGGTGGCTCTGCTCCGCACCCCTCCCAAGTCCCCCGCCACCACCCCCAAACAGCTTCGCGTCCTCAACCAGCCCCTGCCAGACCTCAAGAATGTCAAGTCTAAGATCGGCTCCACAGACAACATCAATTACCAGCCCAAGGGGGGCCAGGTGCAGATCCAGACCAAGAAGATTGACCTGAGTCATGTGACCTCCAAGTGTGGATCCCTGGACAACATTCGCCACCGGCCAGGGGGAGGTAACGTGCGCATAGAAAATGTGAAGCTGGACTTCAAAGACAAGGCCCAGCCCAAGGTGGGTTCCCTGGATAATGCACACCACACCCCTGGTGGAGGCCTCATTATGATCGAGAGCCACAAGCTGTTGTTCCGTGACACGGCCAAGGCCCGGGTGGACCACGGGGCGGAGATCATCATGACCCAGTCACCGGGAACGGGCGTGTCAGGGACGCTGTCCCCCCACCGCCACAGCCACCTGTCGTCCTCCGACAGCATCAACTTGCTGGAGCCTCCACAGCTAGCCACTCTGGCTGACGATGTCACCGCTGCCCTGACCATGCAGGGTTTGTGAGAGCCTTGACAACCTCTACCTGGATCCTTTGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319029 lncRNA downstream 1790 60287388 ~ 60290613 (-) False G281303
TU319031 lncRNA downstream 1790 60287388 ~ 60290613 (-) False G281303
TU319032 lncRNA downstream 1790 60287388 ~ 60290613 (-) True G281303
TU319024 lncRNA downstream 1893 60287388 ~ 60290510 (-) False G281303
TU319026 lncRNA downstream 1893 60287388 ~ 60290510 (-) False G281303
TU319098 lncRNA upstream 8680 60351563 ~ 60352019 (-) True G281359
TU319114 lncRNA upstream 36044 60378927 ~ 60379126 (-) True G281375
TU319115 lncRNA upstream 38096 60380979 ~ 60381185 (-) True G281376
TU319129 lncRNA upstream 62912 60405795 ~ 60406060 (-) True G281390
TU319131 lncRNA upstream 64314 60407197 ~ 60407939 (-) True G281392
NM_001124709.1 mRNA downstream 38634 60165978 ~ 60253769 (-) True cps1
XM_021597493.2 mRNA downstream 1147567 59115416 ~ 59144836 (-) True vwc2l
XM_021597494.2 mRNA downstream 1147570 59115416 ~ 59144833 (-) False vwc2l
XM_021597482.2 mRNA downstream 1360149 58775631 ~ 58932254 (-) True LOC110520290
XM_021597483.2 mRNA downstream 1360150 58775631 ~ 58932253 (-) False LOC110520290
XM_036974808.1 mRNA upstream 78758 60421641 ~ 60463431 (-) False kansl1l
XM_036974809.1 mRNA upstream 78758 60421641 ~ 60463431 (-) False kansl1l
XM_036974810.1 mRNA upstream 78758 60421641 ~ 60463431 (-) True kansl1l
XM_036965030.1 mRNA upstream 154691 60497574 ~ 60523192 (-) True LOC118944680
XM_036974812.1 mRNA upstream 202221 60545104 ~ 60560296 (-) False heg1
TU315276 other downstream 2703220 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 2888828 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 2994641 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 4880916 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 2371692 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 4626666 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 4671376 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 4711817 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 4711817 65054700 ~ 65075985 (-) True G286638

Expression Profile