RNA id: XM_036974808.1


Basic Information

Item Value
RNA id XM_036974808.1
length 3901
RNA type mRNA
GC content 0.52
exon number 16
gene id kansl1l
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60421641 ~ 60463431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCATAGACTTGCCTCCATGGACGAATCCACGCCCCCAACCCTCACTCACTCAGGCAACAACTCAACGTCAAACACAGAGCAGCTGCGGTTCTATGGTCCTATGGAAATAGCTGGGCTGTTCATTGACTTGTTTGAGCCACTGCCATCCATGGAAATAGGACCGCGGAGAAAGGACTGTCAACCGAAAGATCTTCTGATAAACTATCTAACCATACGTTAACGGTTAACGTTAACAaatctctgctctgctccacctAACTTTGctaccagtacacacacacctgacagtaAGGTTCCAAGAATATTTTTTTTTCGTGGATCCTGTCGATTTTCATTCAAGTTCATTGACTTGTTTGAGCCACTGCCATCCATGACGTAAACTAACAGTGCAGTTAGGTGACAGTGCCAACTTCTAGTGGTTTGTTTCTTTCTGTCGTCATCGTTCTCTCTATAGGGAAAGTTTGAGGCCGATCTGACATCCCCTGGTGTGACAGAGAAGAGTGAACGGTCCCAGCCCTGACCAAGCTCTTCAAAGACGCCCAATGGATTCCACTTGGCGACCACTCTCGACCTCAGCAACATGGATGCAGATGGGGCAATGCTCAACATTGAGTGTGATCGTCAGTTGAAACTAAAGGAGGGCAGCTATGCTCAGAATGTGTGGCTGAACTTCTCCTCTCTGCCCTTTCTGGACCACTTTTTCTCTGACACGAGTCTCCTTGAGGTTTCAGAGTCGCTCCTGTCCCCTCTGCTACAGGCCTCAGCTGAACAGTACAACACAGTGCTTCTCTCCAGCCCTGGTTCCCTGTGCAATCTCTTGTTCCTCAACAAAAACCTGAAGAATTCCCTGGCGGACTGTCCAGGTGCACAAGACATGTATTTTGTTCCCGTCACTGAACACAATAGCCACGGTGTGGTTCAGCAGCAGTGTCAGCACAGTGGCTATGGACCAGATGGCTATGATATCCCCCAGTCACCTACAAAACACTGCCAGGGGGATCTCATGTCCCAGTACAACCCTGCTGTCCCCACACCTGGCATAGCGAGGCAGGAGGAGGGGGACACCATCAGCACAGACACAGCTCTAGCCCAGCCATGGACCAAAAGGACTAGGAGCCAAGGCCAGGAGCAGCCTGTGACTGCAATGGTGGAAGAGGCAGTGAGAGAGCAGACACGGTGGCATCTCTCCCAACAAGCAGCCCTGTTCGGACAGGCTGGGCGGATCCAGAGGAGGCTCCAGGCTCTGCTAGGGGACCACATCTCTCGCCACTGCATCTTCCAGCTGGAGGGTCTAAAGAAGAGGCAGGGCAGGGAGACCCCGGGTCCCCCCTCACCCCCAGCTGACACCAAACCCTTTGATCCAGCCATGGGGCAGAGACCGACAGGCACACAGAGCCACAGGACACAGGGGCCTGCCCTACTGCAAACCTTCTCAGTCCCATCCTCTTCTAAAGACATCCAGGAGTTTGCCAGCTATGCCCAGGCTGTAATGCGCACGGTGCAGGAGGCTGTAGACTCTGATGTCACAGAGAGCAGCTCAGATGAAGAATTGGAGCCTGAGCAGAAATGGGGGACCAGGTCTCAACCAGTTAGGCCTGGGTGTGAGTGGAGGTGGCAGAAGGAGAGGGCTGAGGCGGGCAgcagatggacctggctacagcTGCGTGTGGCAGAGCTCGAGGGACGCATCCAACAGCTGGAGGACCTGCACAAACAGATCACCTTCACCAAGGGGGGTGTGGTCTTGGCAGAATCGCAGCTGTTGATGGACAGGCAGATCCAGCAGACGTTACTAACGGAGACAGCAGGGTTGTCGTTCAGGGCGGGGGAGACCGCTAGAGACGCTCCCTCCGACTTGGAGAATGAACCCAGCAGCCCCACACGCCTCCTCAGGAACATACAGAGACAGAGTGCCCAACTGAGCCAAATCGTCAACAGCCTGATGCCTCCtctgaacctctctccctcctcctctccaatctCTAAAGACTCCTGGAGGTGGAAAGGACAGACCAAGAGAGCCttcagcagGGGCCTGCTCCTGGGAGGATGTGACCCCTTCTCCCAGAAGGGACCCAAGAGGAGGAGAGTGAACCGCAGGAGGCCGCACTTCCTCCAAGTGGATGCCACCTGTGTCTCAGCCCGTACACGACCCCTGGTGACCTATCACAAACCTCGACTCTTCATTAACACCACCCACAGACAGCAGgactcagcctccctctcctcctccctctgtcccacctTTGTGTCCTGTGACCCCCTGGCCCTGTGTTCTGACCCAGCCTGTTCCTCCGGCAGCACCCTGATCTCCAGGACCAGTGGCTTTAGGacactccctgttctctctctctcctcagATAGCCTTCTGTCCCACCACCTCCAGAACGCTGCCCTGCTCAGAGAGGACTGGGTCCAGCGACCTCTACTACCGGTCAAGACAGAGTCCAGTCATGTCTACTACCACCACAGCTATATGGACAGGGGACACACTTCTCCATCAGGGTTCAATTGCAGCCACAAGCAGCATGGGAGGAACCGGAGGGGAGTGGCCAGGGGTGTGTCACCTGTCAGATGGGCGGGCTCTGCTCAGACCCCACACAGGAAGGCTTATTGTGGAGGGAGGAAAAGGAGACACACCCACAAGACCATAgaaggtacactacatgacaaaaATGAGGAGGACCTCTTGTCTCAGCTGTCAGACCCTGAGGACAGTCCAGATGAGAGCCTGGAGGATGCTGTTACACCCcagacctcacacacacacaaacagGATCCAATCTGCAGATGTCAGGGAGAGAGTGTTTACAACATTGACAACATCGTCATCCCCACGTCCCTAGCTGCCACTACCAAGGTGGAGAAACTTCACTACAAAGACATTATAACTCCCAGcTGGAGAGTGGTTGATAACCCAcccctggaagagagagagagacaggaagaggaggagctgcTGTGTGACGAGACCTTTTCCCAGAGGCATCTGGggtgtgaaaagagagagaaactccgCTGGACCTCCTGGGATGAGAGCAGATGCTACAGACGCACCACCAGATCTGGCAGTAGGAACGATGGACCAGGTGTTTCTGTATGGGACTCTGTCAGGGATGACATCAGAGGTGACATCAGCACTCACGTGGACTGGAGCTGCAGTCTGGACACGGACACAGACAGAGCCTTAGAGGAGTGGGTGCCACGACTCCCATGGGAGAGTCGTGTGTTCCCGCTGTGTGAGGATGAGGCtcgctgggaggagagggagaaggcagattccaccagcagcacagatgACAGCAGCAGCTCTGTTCAGTCACCCCCATTCTCAGCCCTGTCCAGTACATCACCACCACCTGCTGGAGACAATGAGAACAACACCCTTACCGCAGTCCCCTGAAATGACTTGGCTTTACCATGGCACAGATCCCTTCAGGAGTTTAGGAGACCCAAAGGGACCCAAAGGGACAGAGATACAAGAGGAGCTCTGAACTCCCTGGAGTAGATGTCACACATAATGTGTACCTCATTTTAATGTACACTTGCTACATTTCCTAAACACAGTGATATTTTATTTGGATTCAAATGTTTTGGAggagtgttttatttatttaaaacattGTGATTTGTTTTATTCCTTTCAGTTCCTCTGCTGTATTTTAAGGTTTTGGATGGGATTGTGTTGGATATTCAACATGTACACATTTAACATTTTTAAAGTTACCCTGACCTGCATTCATATTGAAGATCTGTGTACTAGTGCACAATCGATCGTAACCTTGGCTGACAATGTACCACAGTATGTAAATAGTTGTTGCCTGGTATTTATTTTACATGTCTGATTATGCAATTTAACATTGTATATAACAAAATGTCCCTGTTTTTGAAAGGAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319132 lncRNA downstream 13285 60408064 ~ 60408356 (-) True G281393
TU319131 lncRNA downstream 13702 60407197 ~ 60407939 (-) True G281392
TU319129 lncRNA downstream 15581 60405795 ~ 60406060 (-) True G281390
TU319115 lncRNA downstream 40456 60380979 ~ 60381185 (-) True G281376
TU319114 lncRNA downstream 42515 60378927 ~ 60379126 (-) True G281375
TU319633 lncRNA upstream 76701 60540132 ~ 60540345 (-) True G281832
TU319675 lncRNA upstream 152755 60616186 ~ 60616431 (-) True G281872
TU319665 lncRNA upstream 195835 60659266 ~ 60660495 (-) True LOC110520306
TU319749 lncRNA upstream 428412 60891843 ~ 60892823 (-) True LOC110520309
TU319993 lncRNA upstream 566955 61030386 ~ 61030761 (-) True G282125
XM_021597504.2 mRNA downstream 5338 60292403 ~ 60416303 (-) False map2
XM_036974797.1 mRNA downstream 5338 60292403 ~ 60416303 (-) False map2
XM_036974798.1 mRNA downstream 5338 60292403 ~ 60416303 (-) False map2
XM_036974799.1 mRNA downstream 5338 60292403 ~ 60416303 (-) False map2
XM_036974800.1 mRNA downstream 5338 60292403 ~ 60416303 (-) False map2
XM_036965030.1 mRNA upstream 34143 60497574 ~ 60523192 (-) True LOC118944680
XM_036974812.1 mRNA upstream 81673 60545104 ~ 60560296 (-) False heg1
XM_036974813.1 mRNA upstream 81673 60545104 ~ 60560296 (-) True heg1
XM_021597518.2 mRNA upstream 96999 60560430 ~ 60589318 (-) False slc12a8
XM_021597520.2 mRNA upstream 96999 60560430 ~ 60589318 (-) False slc12a8
TU315276 other downstream 2832458 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 3018066 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 3123879 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 5010154 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 2251144 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 4506118 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 4550828 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 4591269 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 4591269 65054700 ~ 65075985 (-) True G286638

Expression Profile