RNA id: XM_021597520.2


Basic Information

Item Value
RNA id XM_021597520.2
length 2988
RNA type mRNA
GC content 0.50
exon number 16
gene id slc12a8
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60560430 ~ 60589339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGGCAttggacaaaacaaacatttacctGCTGACGTTAGTCGAACACGTAGCAATACTACGCTTATGGTGCAGACAGAATGTGAGGGCAAAACATACGGTTGGATTTTTTTTATCACAACATTAATAATTTATATGATATTTAATGTACTTTTATTGTATTAAGATTTTAGAATGAGAAACTCGATATTTGGAACAGGCTGTTTTTGAGGACTTCAGTGGAGATGGTAGTTCATTTTtgagGGTACTAAACTAGAGTGCGTGCAGGCAAAGGTTTGGTCAAAGCGGTTATGGAAGCGTTGCCATTCGGCTGGATGCTCCACAGGTCTAACGTGGAGGATGTGACAGAACTTCTGAAGGCTAGGGAGTCTAGGAGGGCCAGCGGCAGTAAAACCACACCTGTCCAGGATCTGTTCCATGAGGACGCTCAGGGGTCGCAGCATCTCTCTCAGCCATGGTGGAGGGTGAAGCTGTTTGTGTGGGAGCCTGTCCTGTTTGGGACGTGGGACGGAGTCTTTACTACCTGTATGATCAACATCTTTGGTGTGGTGTTGTTCCTCCGCACTGGGTGGCTGGTGGGGAACCTAGGTGTATTGCTAGGTATGCTCCTGGTATCCGTGGTGGTTATCGTTGCCCTGGTAACAGTGATGTCAGGCATCGGCGTCTGCGAGCGCTGTGGTGTCGGTAGTGGTGGAGTTTACTCCATGATCTCTACTGTCCTGGGAGGAAGAGTAGGTGGGACCGTGGGGCTCCTGTATGTTTTCGGCCAGTGTGTGGCTGGGGCCATGTATATCACAGGGTTCTCAGAGTCTATTGCTCAGCTCCTGAGCCTGCAGAGTGAGTGGGCCGTTAGAGGGATGTCTGTGGCTGTCCTGCTCGGCCTTTTGGGTATTAACCTCGCCGGGGTCAAATGGATCGTCCGTCTCCAGCTGATACTACTGGCCGTGCTGGCTGTCTCAACGCTGGACTTCGTTATCGGGACGTTTTCCCACCTCGACCCAGAGCATGGCTTCGTAGGGTACTCCGAGGAGCTGCTACGTAAGAACACTCTACCAGACTACACGACAGGAGAAGGATTCTTCACTGTGTTTGGAGTGTTCTTCCCCGCTGCTACAGGTGTGATGGCAGGCTTCAACATGAGCTCAGATCTGCAGAGACCGGAACACAACATCCCTGTGGGAACACTGGCTGCCGTCTGTACCTCGTGGTTCCTGTATCTGGTCTTTGTGTTCCTGCTGGGAGCCATCTGCACCAGAGAGGCACTGCACTTCGACTTCTTAATAGCAGAAAAGGTCTCCTTGGTGGGTTTCTTGTTTCTCCTGGGCCTCTACATCTCCTCGCTGGCCTCCTGCATGGGCGGTCTGTACGGGGCACCCAGGATCCTCCAGGTCATCGCCCAGGAGAGGGTCATCCCAGCCCTCGCCTTCCTGGCACAAGGGaAAGGTCCTAATAAGACTCCGGTGGCGGCCATAGTCTTGACTAGCCTGCTGACCATGGCTTTCATCTTCATCGGACAGGTCAACGTCCTAGCCCCCATCGTCACCATCAACTTCATGCTCACTTACAGCTTCATTGACTACTCCTACttcagCGTGGCGATGACCTATAACCTCCAGcccagagagaagagggttggtcctGCCAAGAGGCCTGGGACTGGAGCCTCATCCTTCACAAACCATACATCCAAGCCCCTCATGACCACCACCCACCAGGGTTATGGTACAGAGGGGGATGTTGCGAGCCCAGGGAAGGGGACCCTGTTAGAGTTTACTAGGGATATGGACCAGATCTTTCCCCTGCCCAATGGTggtgaacaggaggagacagaaaaGGACAAGGCCACAGAGAAGGTTTCCATGCCAGGCCTGAGAGGCAGGATCAGGAGGGTGAAAGCCCCTGCCAAGAAGACTCTGATGGACAGCTTTGGGCTAGACCTTAACAGCAATGCCTTccctagtgagggagatggagaaggagatggaggggttgATCCGGCTCCCCCAGGTCCAGGAGAGTGTATCTTCCCCCAGGAAAGACCTGTAGAGCCCAGCCGAGACCCGGAGGAAGTGATACAGGACAAGACCCTCCTTCCCGGTCGTAACCCCATAGAGCTTGACCCTCCAGGGTCGCAGAGAGAAAACACTGGTTCTGACTGTAAACCAGACTACCAGGGATCAGAAATCCAACCGATGCCTGATTCCTTCTATGCCAAATTCTGCAACCACTGGATTGCACTGATTGGTACATTATGTTCCATCCTGATCATGTTTGTCATTCAGTGGGTCTATGCCTTGGCCAATATAATAGTCGCCTTGGTCCTCTTCCTCTACATTGGAAAAGCAAGCCCTGGACTTCCAATAGGAGTGGCATCTCGTTTCAGCTTTTTCAAATGGATTAGGACAACCCTGAGCAACCTAGGAAGGGGTGAGCTTCCTCAGGACCAGATTATCGTGACACCCTCTCTGTCAGGAGTCGGCATGGAAACTAGGCAGCTGACAGAGGAAAACCTGGACTTTGCCTCTCGGGACCGCTACCACCAGTCTTCCTTTATCGAACCAGACAGGATGGCGCACCTACAACTTAACTAATCACCACAACTCTGGATGGCTGGTCCCATCACAGACCATAGTAGCCTGGTCCAATATTTGTTTTGGCTGTCTTGCCAACTTGTTACAATGACCATGGGAGTTAGCAAAACAGCACAAaatgatctgggaccaggctgaaGTAATGTCTCATTCTAGaatttatagacagattattaaCAGTCAAGCTGAAATCAGTAGTCCTACTCTATGACATCTGGATTTGTACAGGTCTCTGTGACTGTGGCAATGCATTACATGTTTTAGCAATGCATTCCTCTCAATGATGTGCTCAAATGGTTCTTCTCTATTTATTGTGTCCATTATCATTgaatatataaataatacatGTTATTTTCTTCCAATCTATGTTTGACCTCTGATTAAAATGTCTGGCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319633 lncRNA downstream 20085 60540132 ~ 60540345 (-) True G281832
TU319132 lncRNA downstream 152074 60408064 ~ 60408356 (-) True G281393
TU319131 lncRNA downstream 152491 60407197 ~ 60407939 (-) True G281392
TU319129 lncRNA downstream 154370 60405795 ~ 60406060 (-) True G281390
TU319115 lncRNA downstream 179245 60380979 ~ 60381185 (-) True G281376
TU319675 lncRNA upstream 26868 60616186 ~ 60616431 (-) True G281872
TU319665 lncRNA upstream 69948 60659266 ~ 60660495 (-) True LOC110520306
TU319749 lncRNA upstream 302525 60891843 ~ 60892823 (-) True LOC110520309
TU319993 lncRNA upstream 441068 61030386 ~ 61030761 (-) True G282125
TU320047 lncRNA upstream 519810 61109128 ~ 61110355 (-) True G282179
XM_036974812.1 mRNA downstream 134 60545104 ~ 60560296 (-) False heg1
XM_036974813.1 mRNA downstream 134 60545104 ~ 60560296 (-) True heg1
XM_036965030.1 mRNA downstream 37238 60497574 ~ 60523192 (-) True LOC118944680
XM_036974809.1 mRNA downstream 96999 60421641 ~ 60463431 (-) False kansl1l
XM_021597521.2 mRNA upstream 4209 60593527 ~ 60600103 (-) False znf148
XM_036974814.1 mRNA upstream 4209 60593527 ~ 60600106 (-) True znf148
XM_021597522.2 mRNA upstream 17792 60607110 ~ 60615212 (-) False LOC110520303
XR_005051348.1 mRNA upstream 17792 60607110 ~ 60615212 (-) True LOC110520303
XM_021597526.2 mRNA upstream 31168 60620486 ~ 60633875 (-) False snx4
TU315276 other downstream 2971247 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 3156855 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 3262668 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 5148943 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 2125257 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 4380231 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 4424941 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 4465382 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 4465382 65054700 ~ 65075985 (-) True G286638

Expression Profile