RNA id: XM_021597524.2


Basic Information

Item Value
RNA id XM_021597524.2
length 4434
RNA type mRNA
GC content 0.45
exon number 10
gene id tgfbr2l
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60634539 ~ 60654313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATCTGGATCCGCCTACACGGAACTCCAGCCAAAAGCCCCGAGCCCAACCAGTTGTTTCACTGAATACGACTTCAATAAGCTAAATGAACGTCTATCTTACTACTCACGTTCCCAAATACATAGTCAAATACAGTGCGACCACGAAGTTTTAATCaggttattttttaaatgtcaataTTATGGGGTGCTGGAGATTCTCGGCAGTGAATATTGTTCTTCTGTCTTTCTGTCTTCCTATCCTCTCCTTCACACACATCAAGACCAACCTGTGTAAGTGGTGTGACTACTCCAGCCCTATCTGtgaggacagtgtgtgttataccaactgctccctctcctccttctgtaCTCTGAGTGAAGAGATTTGCATTGCAATATGGCGGAAGGACAATGAGAGTATGAGTGTGAAGACGTTATGCCACCAGCCCCAGCAGCCACTGGAGAATATCATGTTGTCAAACTACTCCTCCAACGAGTGTGTGATGGCTCCTCAGCCCTCTGAGGATGGGGTCCTGTTCGTTTGTGGCTGCCTGGGAGAACACGAGTGCAACGATAAGCTTATATTTGACAAGGGCTCCAATGATTTTTCCAAGCTCAAGAGTAAAGATGTGATTCCAGTGGTGGTGATCAGCCTGGTCCCTCCCTGTTTAGTGGCTATCATCGCTACCATGGCTTTCTACCTGTACCGTACCAGACAGCCCGGCAAGCAGCCCAAAGACTGGGCTCCCAAACGCACACACTACCAGGCCTTGGACATCCCAGAGGGACTCAGTGGGGAGGCCATCACCGGCGGTGAAGACTGCCATGGCAAGCTGTCAGCCATCAATAGTGACGCTACATCTGACATGTCTCCCGTCCGGGCCCATAACTTCAACCACAGCACGGAGCAGCTACCCATCCAGCTAGAAGCCTTGGTGGGGAAAGGGAGGTTTGCTGAGGTGTGGCGGGCCAGGCTCCACCACCAGGCAGCTGCTCCTCAGTATGAGACGGTGGCAGTGAAGATCTTCCCGTCTGTGGAGTATGTGTCCTGGAGCAACGAGAGGGCCATCTTCTCTGACGCCAACCTGGAGCATGAAAATGTGGTTCAATTCCTGACAGCAGAGGAGCGAGGGCCCTCCGGCTCCCCTCAGAGGCAGTACTGGCTGGTCATGGCCTACCACGGCCTGGGAAACCTACAGgacttcctggcgggccatGTGTTGAGCTGGGCTGAGCTGTGTGCTATGGCTGGGTCGGTGGCTCGAGGATTGGCCCACCTCCACAGTGACACCACCCCTTGTGGGATCTCCAAGGTGCCGGTGGCCCACCGTGATCTGAAGAGCAGCAACATTGTGGTGAAGAGCCGGAGAGAGTGTGCCCTCTGTGACTTTGGTCTGGCTCTGAGACTGGACCTCTCCCTCACCGTGGATGACTTTGCCAACAGTGGCCAGGTGGGTACAGCTCGCTACATGGCCCCTGAGGTGTTGGAGTCCAGAGTGAATCTGGAGGATCTGGAGGCCTTTAAACAGATGGATGTCTACTCCATGGCCCTGGTCCTCTGGGAAATGGTGTCCCGCTGTGAAGTCATAGGAGAGGTTAAGAGTTACGAGCCACCGTTTGGCTCTAAGGTGTGTGACCAGCCGTGTGTGGACAGCATGAGGGACCTGGTCCTGAGGGACAGAGGCAGACCTGAGATACCCACCAGCTGGACAACACATCAGGGGATGAATCTGCTGTGTGCCACCATCACTGAGTGTTGGGACCATGACCCAGAGGCCAGGCTCACAGCCCACTGTGTGGTGGAGCGCTTTGGAAGTCTAGAAGAGGAGATGGAGCAGGGAGTGTTAGACGCTGTCAACAGCCAGGAGTGTCCTCCCTCTGACACCTTCCCTGACTCCACCGGCTGTGATGTGGACCCTCTGACCCCTGAAACAGATACAGAGGGGACCCTCATCCCTGGGCAGATAAGTGAGATATTATAAGGAGGACTTAAACTTCATCACCAAAAAGAGACATCTTTGTATGATAGATTGAAGGCACTCTACCCTATGAACAAAGAGGAAAACATATTTTTTCTATGATAGATTGTATCCTTTGAAGGAGCTGGTCTCCGGATTGATTTGTAATATAACCTTTATGAAGTGTCTTATGAATGCACGTATGAACTTTTGCCACTGAAGAGATATTCTTTCTGCCCCTTGGAAAGTTGTGTGTACAGGATTCAGGGAACAGAGCAAACAAGAAGACCACAAATCATTATCCCAACTTCACTATCACACTGCAACATGTACATTTGACCAATAACTCAAAAAGCAGATTAGTTTCCAAATCTGAAGTACATACATCCTATAATGAATGATCACATGGATCTGTTCTAaatgcaggttgacgtttattttcacgaatcttgtcctggaggcagaactgagctaTTTCCGCTTAGATAGGCTAGCTGCAAAGAAAAAAAGGGCTAttattgtaaaaattcatgaaaacaatgtttttattttggcCTTcgttttaggttagggttaggcataagggttagcagtgtggttaagattagatttaaaatcagattttatgactttgtggctgtgccagctagtgaccactctgcagagctgcctccagaacaggGTTCATGATAGAAAAATGCAAATTGCACTTAAAATGGAACCTTATTCCCTACagattgcactacttttgaccagattccTATGGctctgcactatatagggaaataggatgccatttgggacgtacaaCTGTTTATTATTTGCTAAAGTATAGAGAGCACTACATTTTGACAACCTTCATTGGTGTACCAGCTATTTAAATTGGAGATCATTTACTTTACAATAATTATTACTTATGATTAAttatcatttattttttaaaattagtTTTCCATTGCCTTCTCAGTGTGTAGCCTCAAACAGTGGTGTGGTTCTCATTCCCCTTAATATATCCTAAATGGCTCCCTATGTCCTACATactgtggtgcactacttttaaccagttAGCGCAGAGCTGAGAGGTTTGCATTTTTCTAAGGGTTTCATTCTGATTAACCACAAGATGCTCTGACTACAAATGGTGAATGCTGTTATATAGGCTAGAGACCACAACACAAGCTAACAGGGTGAAATGCCTTTTTTTAAGATGAATGAGAACCAAGGAGCTTTTAATGATCATTTGAACTGATAGCTGTACAAAAGGACTTTCTAAGGATACTTTGATCCGTTTGTAGCCATTGCATACAACTACATTGTTTTTCCCCACCATGTGAAGTACTTGCTGCCTTCATCTGTTTACTAAGACACATAGTTAATTTGTTGAAATCAAATCTGATGTCTGAACATTATTAAGAGGGCATGATCTATCTTTATATACTATGCATCAGAGAACTCACAGTAAGAGCGACTGCTCTCCCAGACAGCCTGGTATTACACTCAGATCTACACCAATTCAATCATTCACTGACTCTTTTGCTTCAAAGGTAATGTTAAAATATTTTATCACACTAACCGAGCGGACTAAAATAATTAAAACAGGAGTTGGTGTAGATTTGATTACGCCATTAAGAAGATCAATAGCTTTTTCTCATAGAACCAATCAATGGCTGGGAAAGAAGCACTGTCTAATTGTGAGAGGCATGGCAGTGACATCCTCTTTGAATCATGAGCTGGGTCGTGTTAGATTGgcacaaatggaagaaaacaaggTGAAATGTAAAAGTACTCCCTTAGCCTTTATTGGACAaggctatttttttatttatttccgtTGCTACggcgtgccctaatgaacacaaccaagGTTAACCCTCTTCCCTTGGGAATGGTCAAGTTTGAGGATGCACAGAGTAAGACCATGGCCTTAACTATGGAGAAATGTCTAAGTATGATATTAATGAACTATGCAGAAGACTAAAGAATGGTGTTATTGAACTTCTGATGAATGACCACAGATAAAAACAAAATTATTGTGAACTGGTTCCACAACATGTTACCTATTTGTCTTGTAAAATAGGTTATGTATCAGGTCTCTTATTTTGTTACTATTTGTGAGGGGGGAAAAACCCACCACAAAACTGTCATAAAAAGACACATGAAAAAGAACGTCAAGCAGCTTTATTGGTTTGTTGTTCCAGAACCCTTATTTTAAGAGGTTGACATTATACGTGTCACAATATTTCAGTAAGAAGCACAGATTTAGGCCCGGATTCAATCTGATTGAGCTTTGTCAGTATGtgccatttaaaggtaatttccaattgagccaACATATGCAAATTAGGTCTCCACAAAGGCAGGAACAATGTAattttttttctgttttaattttacccctttttctccccaattttcgtggtatccaattgtttagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU319302 lncRNA upstream 160 60634084 ~ 60634379 (+) True G281538
TU319239 lncRNA upstream 12906 60619072 ~ 60621633 (+) True G281492
TU319238 lncRNA upstream 13409 60619072 ~ 60621130 (+) False G281492
TU319288 lncRNA upstream 18725 60615592 ~ 60615814 (+) True G281525
TU319269 lncRNA upstream 28247 60605699 ~ 60606292 (+) True G281517
TU319349 lncRNA downstream 69269 60723582 ~ 60727146 (+) True G281579
TU319459 lncRNA downstream 194869 60849182 ~ 60923455 (+) True G281680
TU319542 lncRNA downstream 298827 60953140 ~ 60955335 (+) True G281754
TU319782 lncRNA downstream 312015 60966328 ~ 60966638 (+) True G281957
TU319783 lncRNA downstream 313256 60967569 ~ 61023059 (+) True G281958
XR_005051347.1 mRNA upstream 251187 60382674 ~ 60383352 (+) True LOC118964303
XM_021581343.1 mRNA upstream 348459 60277245 ~ 60286080 (+) False myl1
NM_001124291.1 mRNA upstream 348462 60277444 ~ 60286077 (+) True myl1
XR_005039919.1 mRNA upstream 364640 60267642 ~ 60269899 (+) True LOC110505381
XM_036974796.1 mRNA upstream 582245 59870559 ~ 60052294 (+) True erbb4b
XM_036974822.1 mRNA downstream 677046 61331359 ~ 61370875 (+) False LOC110520315
XM_036974823.1 mRNA downstream 677230 61331543 ~ 61370875 (+) True LOC110520315
XM_036974824.1 mRNA downstream 821563 61475876 ~ 61505428 (+) True LOC110520316
XM_036974825.1 mRNA downstream 935745 61590058 ~ 61647253 (+) False LOC110504376
XM_036974826.1 mRNA downstream 955548 61609861 ~ 61647253 (+) False LOC110504376
TU318844 other upstream 343972 60287388 ~ 60290567 (+) True G281141
TU317976 other upstream 580122 60052716 ~ 60054417 (+) False G280315
TU317977 other upstream 580122 60052716 ~ 60054417 (+) True G280315
TU315509 other upstream 2844207 57789734 ~ 57790332 (+) True G277973
TU314786 other upstream 3369647 57264567 ~ 57264892 (+) True G277296
TU319365 other downstream 85926 60740239 ~ 60757350 (+) True G281591
TU319499 other downstream 237211 60891524 ~ 60893778 (+) False G281714
TU319500 other downstream 237211 60891524 ~ 60893778 (+) True G281714
TU319833 other downstream 379453 61033766 ~ 61037105 (+) True G281996
TU320641 other downstream 1303075 61957388 ~ 61961475 (+) True G282707

Expression Profile