RNA id: XM_021597555.2


Basic Information

Item Value
RNA id XM_021597555.2
length 2729
RNA type mRNA
GC content 0.37
exon number 4
gene id LOC110520322
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61768503 ~ 61772972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGAAGCAGGAGCTTCGCACTGTGAACATTACATCCTATGGAGTAGCCTAGAGTGGTAGAGCGGCAGACCAATCTAACACTGGATTCTTTTTTTCTCCTTTGCTTTGTTTtgagaagacaaaggagatgcaGTCTCTTGCCCAGGAAATCAAGACATTTTCCAAGACCAATTTGAGAAAGCAATGCACCCGCGTGACGACGTTGAGCGGCAGGaggataattgagacatggaaaGGGTCGACTATACATGTTGTAGAGGATAAAAGTCAGCCTGAGATAGCATGCGGCTATGTACAGGACAACAGCTGGGACGTACAAGTTGGAGTTATTAAACCTTATTTACTATTAGGCTCACAAGATGCTGCACATGACTTTGGCACTTTGAGAAAATATAagGTGTCCCACATTTTGAATGTAGCCTACGGTGTTGAAAACGCATTTCCAGACCTGTTCATTTATAAAACACTGAGCATTCTGGATGTTCCTGATACTGACATAACATCCTATTTCCAAGAGTGCTCAAAATTCATAGACCAAGCAAATGCAGAGAAAGGAGTTGTGTTGGTTCACTGCAATTCTGGAGTCTCGAGGTCAGCCTCGGTCGTCATTGGGTACCTGATGTCCACAGAAGGAAAGCCTTTCAATGATGCGTTTACCTTGGTGAAATCGGCTCGGCCAGCCACGTGCCCAAACCCAGGGTTTCTTGAACAGTTGAAAGGTTTCAAACCGAAAGGGGGCATAGAAGCCAATGGTGTGGGCTATGCATGagcaacaacagcaacacctccagGGCCAGAGTAATGCATTTCATCATCAGCCACTGTTTCTCACAAGGAGGCCATTCTGATGTGTCCAAAATTGTGCCCTATTTTCCTATACATATAGGATAATATAGTATAATGCgctggggccctggtcaaaagtagtgcaacatATAGGGAATAAGATGTCATTTGAATCTTACTATGTCCCCTAATACCCAAGGTACCCCAACATCATGTTGAGGTGTTCATTTGACGCCATTTTTTCAAAAGCCCTACAATGCCCTGTCAATATACACTGTGGGTCCAGTGTTATTCAATAGTTAAACATCTCTGTTATCAATTTCTATAAACCACTGAGTGTGGTAATGAGGCCACAATGGAATGTAAGAAAGGTATAAATATACAATTCTCAACTTGATGAACCATGTCTGTACAACAATTCTTAAGTTCATTTTGAGTCTTTCCTTTTTTGTCCCAAAATGTGTGAGGTGAAAGTTAGAGAAAACTGACTAAACTGTATTATTTAATATAGTTTTAATTTTGTTAACTTATATCTTGGTTTAAGAAATATTATGGACATCCTTACTTTGTCTTAACATATTATTTATTGCATGTTGGGATGTTATCTATGGCAAGGGATTTCAGAAACTTTCCTTGCCCAGGGTCCCCCACCCATGCAAACCGACAACCCCGGGACCCCAATCATTTGTTAGcaaaaagtaaaataatgtatTGTCTTATCATTAGGTGAATGATAATTGCAAGTATAAGTAATCATTTTTAAATTAATAGATTTGGTTTGGACTGTTTAATTATTTTAACCTAGCCGCAGTTCATTGCAAGTGTAAACTCGACTCAACTTGCTGTTGTGAAGCAAATTTTCATATTTTCATATAACTTTCATATAACTCTACATATTTTTCTATTGAGttgagagaacatttagcagaTTTGAAGCTAATTTCcagcaattctatgcatttttcCGTGGCTACTGCTGTGTGCTTTTGCTCAAATATTATTAAATCAATGTGCATGTGCCCTGGAATTTTCatttctccctgactgtctagcttttatttgattgttagttctcaaagatgctACTACTTAAAACTATACATAGTTCAATATCTTTTCTGCATGCTTTCTATCTGGTTTAGGTAGTTTAAGTTGACACTAAAACTGTTTTTCCATCCTGAAACGGCGGCCTAAGAATTTTCTATACAGAAAAAACCCTGGTAATTAGCATCATATTAAAGGGATAATTCGAGATTATGGCTATGAAgccatttatctacttccccagagtcagatggtaGCAtactagctagcatgctaacggttcctgtagacttccagttattgtgctaacggtagttagcattggctcgtgaaATTACCTCTAACGTCCTCCATACTGGACGCAGAGATTTAACAATAGTATCCACGATGGTATTCTGTTGTAGCAGCGATAttcataaaaaatgtttttttcacaTAAAATCCTCGAAAATATTTCCCCCAAATTTGAAAACCCCTGATCTATGCGACGTTGAATAAACTAAGAGAATAATATAGTGGAGgctagattttttgttgttgttgtaacagtttttatgtttttatgttattattataagttttaaatgttgttttttattgCAAAAAAATTACTATGATTGTGGGTGTTTGAAATATGATGTTTATTAATGTTAAATTATTTTATATGAACATGTTTGATAAAATGTTATGAACTCTTGTTCTAGAATGTAAACATATAATTATTCTAGTTACTTATTCTTCCATACTCAATGTAGGCTAGGCTACTGCTAACATTTACAACATAATATATGTTTCGGGAACTAGTGTGAATTGCGTTGTCAATAACCTGTTGATTAATGCAGAAATTCACCCTTTggatcaatgtgtgtgtgtaaattcaGAATATGTTTGAATAAAAT

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321287 lncRNA downstream 70184 61693218 ~ 61698319 (-) True G283282
TU321259 lncRNA downstream 78928 61653325 ~ 61689575 (-) True G283256
TU321251 lncRNA downstream 121224 61643098 ~ 61647279 (-) True G283251
TU321223 lncRNA downstream 165306 61602757 ~ 61603197 (-) True G283224
TU321192 lncRNA downstream 200028 61567975 ~ 61568475 (-) True G283198
TU321383 lncRNA upstream 72443 61845415 ~ 61849699 (-) True G283373
TU321411 lncRNA upstream 124761 61897733 ~ 61905194 (-) True G283398
TU321562 lncRNA upstream 375345 62148317 ~ 62151490 (-) False G283541
TU321561 lncRNA upstream 377552 62150524 ~ 62151490 (-) True G283541
TU321611 lncRNA upstream 475275 62248247 ~ 62254684 (-) True G283587
XM_021597552.2 mRNA downstream 39902 61663705 ~ 61728601 (-) True LOC110520320
XM_021597551.2 mRNA downstream 39906 61663705 ~ 61728597 (-) False LOC110520320
XM_021597553.2 mRNA downstream 63313 61663705 ~ 61705190 (-) False LOC110520320
XM_021597549.2 mRNA downstream 185443 61578579 ~ 61583060 (-) True LOC110520317
LOC110520318 mRNA downstream 220251 61506974 ~ 61548252 (-) True LOC110520318
NM_001124360.1 mRNA upstream 117137 61890109 ~ 61916432 (-) False il-1r1
XM_021581389.2 mRNA upstream 117141 61890113 ~ 61916561 (-) True il-1r1
XM_036974835.1 mRNA upstream 146922 61919894 ~ 61948009 (-) False zmp:0000000936
XM_036974837.1 mRNA upstream 147179 61920151 ~ 61942087 (-) False zmp:0000000936
XM_036974836.1 mRNA upstream 147179 61920151 ~ 61956548 (-) True zmp:0000000936
TU315276 other downstream 4179320 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 4364928 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 4470741 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 6357016 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 941603 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 3196577 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 3241287 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 3281728 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 3281728 65054700 ~ 65075985 (-) True G286638

Expression Profile