RNA id: XM_021597567.2


Basic Information

Item Value
RNA id XM_021597567.2
length 1575
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110520325
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61836665 ~ 61841206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAtccgccagttgcccatcccagAACTAGTTTAATGTACATATTTTTCAAAGAAGGCTATGGGGCAAGTTCTCCAGTCCTGCTTGGTGTTGGCTTGAATCAGGAGTAGGAGGGTCAGACAGGCATGATGATGATAGAGGAAATTTGTAAAGGGTAAAAAAGCTGGTCCCGCAGACTGAGGTCAGTCCGATTCCAACGAGCAATCACTGCAGTGCTAACTAGTCTGggaaggaggagatagagagagcggaGCCACAAGCCCACCCGCAATATGATCACACACGCGCCAATGGAATAAGCAACAAAACAGTTGGAAATCGAAATCAATCTTCACCGTCCACGAGGAATTCGATATCAAATAGGTTATTTTGGTTTTACGCACAAAAGATGACGTTTGAACCTCTTTCCTTTTACGTGACGCAAAGTTTAGACACGTCCGGGTAGACAGACAACTTTAGGCTAGCTATATATTTTAGGATTTCATTACGCGTTTAAGTTTATCCATTCCGACTTCATAACCAGACATTGCATTTAGATTTATTGTTTATCCTAAACCAACTGTCAGCATATAACTGAGGATGATCATGTTTTCCCACGAGTTATTCGTCTCTTTCCTCGCGGTTACCTGTCTGTTTAGTATACCCAGAGCGTCTTCGGCGGCATGTGAGCCCATTCGGATCCCTCTGTGCAAGTCCATGCCCTGGAACATGACGAAAATGCCCAACCACCTCCACCACAGCACCCAGGCGAACGCAGTCCTGGCCATTGAGCAGTTTGAAGGGCTTCTTGGCACCCAGTGTAGTACAGATTTACTGTTCTTTCTGTGCGCCATGTACGCCCCAATATGCACGATTGACTTCCAACACGACCCTATCAAGCCCTGCAAGTCGGTGTGTGAGCGTGCGAAATGCGGCTGTGAACCTGTGATGAAACGGTATAATCACACCTGGCCAGAGAGCTTGGCCTGCGAGGATCTGCCAGTCTACGACCGGGGAGTCTGTATCTCACCTGAGGCCATTGTAAAAGCAGAAGGACCAGAATCAACTCCTGACTTTCCAAGTGATTCTCACAATGTCAACTGTAAAGGAGCCAACAATGATCGTTGCAAGTGCAAGTCAGTTAAACTGGGTCTCAAGACCTACCTAAAGAATAATTACAACTATGTGATTCGTGCAAGGGTGAAGGAGATTAAAAACAGGAATCATGACTTGACTGCAATCGTGGAGGTCAAAGACATCCTGAAGTCTTCCTTTGTTAACATCCCTCGTGATACCGTCACACTGCACTACAACTCTGGCTgtccctgtcctcctctcaccGCCAACGACGAGTACATCATCATGGGTTATGAGAATGAGGAGAGGTCCAGGCTTCTGCTCATCGAAGGCTCCATTGCACAGAAGTGGAAGGACCGTATGGGGAGGAAGGTGAGGCGTTGGGACCAGGTACTGAGGGACCAGAGCCGGGGGAACTCTGGCAGAAGCAATATGCGGCGGACCCACCACTGATCATCTAAGGCGTGTCCCTGTGCAGTGATgacagggttgcaaaattcctctAACTTCCCAGGTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320481 lncRNA upstream 138283 61693535 ~ 61698383 (+) True G282560
TU320459 lncRNA upstream 182469 61653550 ~ 61654197 (+) True G282538
TU320399 lncRNA upstream 267533 61568709 ~ 61569133 (+) True G282486
TU320397 lncRNA upstream 271316 61564123 ~ 61565350 (+) True G282484
TU320394 lncRNA upstream 272934 61563464 ~ 61563732 (+) True G282483
TU320559 lncRNA downstream 607 61841813 ~ 61843829 (+) True G282634
TU320587 lncRNA downstream 4084 61845290 ~ 61849674 (+) True G282658
TU320640 lncRNA downstream 116182 61957388 ~ 61964066 (+) False G282707
TU320646 lncRNA downstream 140865 61982071 ~ 61982481 (+) True G282712
TU320677 lncRNA downstream 161461 62002667 ~ 62003022 (+) True G282725
XM_036974830.1 mRNA upstream 4253 61773434 ~ 61832413 (+) False LOC110520324
XM_021597580.2 mRNA downstream 279993 62121199 ~ 62125952 (+) False LOC110520332
XM_036974864.1 mRNA downstream 280004 62121210 ~ 62125952 (+) False LOC110520332
XM_021597579.2 mRNA downstream 280012 62121218 ~ 62126483 (+) False LOC110520332
XM_036974863.1 mRNA downstream 287828 62129034 ~ 62156042 (+) False LOC110520333
XM_021597581.2 mRNA downstream 289643 62130849 ~ 62156042 (+) False LOC110520333
TU319833 other upstream 799561 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 942888 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 942888 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1079316 60740239 ~ 60757350 (+) True G281591
TU318844 other upstream 1546099 60287388 ~ 60290567 (+) True G281141
TU320641 other downstream 116182 61957388 ~ 61961475 (+) True G282707
TU320785 other downstream 352398 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 526408 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 865125 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 1175120 63016326 ~ 63022591 (+) True G284313

Expression Profile