RNA id: XM_021581389.2


Basic Information

Item Value
RNA id XM_021581389.2
length 2626
RNA type mRNA
GC content 0.48
exon number 10
gene id il-1r1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61890109 ~ 61916561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCTAGCTGAGTGGGCGGCTTGTAGTGGAACCAGGCATACGATGCGCTCCCTGAGACGTAAAGTAGGCTAACGTTACTCATATAGGTTCAAAGTTCCGGGAAGGGGATTTCCGCCAAACCATTACTCTTGTAGACCAAATGAGGAGACGGTGTTTATTCCACTGACGCAAAATAAAGCACAAAGCATCAAGCTAAGAACACCAGGGGGCCGTAGAGGTCCACCACATCAGTGCAGGTCACTTCTTCCAGCTGAAGTGTAGTGATGACGATGATGCTGAGGACCGAACCACTGTGACCTGGAGTAGAGGGGGGAACCAGACCCTTAACACAACCTCTGGGGTGGAGGTCAGAGGGGAGGTTCTGTGGTTTCTACCTACCCACACCTCCCATAACGGACACTACACTTGTGAGAGCAAGTACCCCACTGGATCGTGGGAGATGAAGTTTGTTTTGTCTGTGGACCCTGGGCCCTGTCCTGTCCCAGCTGAGAACAGGACTGTATCCCAGGGGATGAGTGAAGTGGTGTTCTGCAGACAGCAGGATGTCCTCAGTCTAGACCCCACAGCACACATCCGATGGTTCAAGGACTGTAGTCCTGTCGACAAGCATGGAGAGACGATCATTGAAGAAGATTGTCCGAAGAGGCTCCGGTTGGTCAATGCTACTGAGAGCCATGCTGGAGTTTATACCTGCCTGGTAGAGTTCTCTCTGCAGGGGAGAAACTACACCGCCACCCACAGCACTCAGCTCAAAGTCAACAAAGAAAAAGTCCCGTTGAAACCCCAAGTAACCTATCCCAGAAAAGAAACCTTTACGGTTGAACCAGGCTCAAGAGTAGAGCTGGTGTGTTCAGCGTTTCTAGGGGTCGGTGAAGGTACAGAGTCAGAGAGCTCTATGTTCTGGACGGTAGATGGAAGACATACCGACCACATAGAACAGCTCAACGTGACAAAGACAACAATCCTTTCTAGGAGTAGTGGGGTCTATGGCCGGTCCACTCTGTCTATCTATGAGGTCCGTCCTGAGTTCCTCAACGTGACCATCAGCTGCATCGCCAGGAACGCCGTGGGTCGGGACATAGGGTTTCTGTGGCTCCAACCAGCCAATCACAGTGGTTTCTACACATGCCTGTGTCTCTGCCTGGCCTTTTCTATGGTCGTTCTTGGAGTAGCGATGTGCTGCCTCTTTAAAGTGGACCTGGTGCTGGCCTATAGGAGACTCCTCCCCCTAGTGTCCAAAAAGAGGGCACCAGATGGAAAGCTGTATGATGCCTATGTCAGTTATGTCCATGGTGATGGGTTGTCCAAGGCAGAGATGTTTGCTCTGCAGGTTCTACCTGAGGTGTTGGAGAGACGATACGGATACACACTTTTTGTCAGTGGCCGGGATGACCTCCCTGgggaagCGATCCATGATGTCACCTCAGAGACAATGCGGAGAAGCAGACGACTCATCATCATCCTGTCAGCCCAGAGTGCATCCCCTCTACACCCCAAAATGGATCCTGAGGACCAGTTACCACTGCACCAGAGCCTGCAGGACCGCCCTAGCTACGACCAGCAGATTGGCCTGTACGACGCTTTGATCCAAAATGGCCTCCAGGTTGTCCTGGTGGAGATAGATGGCAAGGTGGACTACACTTCCCTGCCCAAGTCACTTCACTATATCAGGAGGAAGCAGGGAGCTCTGAGATGGAGGAGGCCCAGCTCTGGAAAGAGCAGCTCCACTGCGTCCCCTAATGGCCACTTCTGGAAGTGTCTTAGATACCACATGCCCTTCAAGCCCAAAGGGGCTCTGAAACCGCAGCCAACACCTGGGATAAACTGTAGTATAGAACTGTATTAGTCATGTCTCTATTAGACGTTATCTGACAATGTTTATATTGATGTATTCACATGGCTATTATGCCTATGGCTGGTGAGGCCAAGCCTGATCCTGGAACCCTTGAATTGTTGAATtatagattttttaaaatatgtttgagACACCAATGTGATCGAGTGTCCTAAGAATTGTACAAGAGCACTTGTGCAGATTGAGAGGCTTTTTCTTGTAGCAATCCGGCCTACAAGAAACAGTTACACTCCTCCTGAATAGAGTTTTGCTAATTTTGCTCATACTTTGCTCATACTAGTTCCAGTGTAATCGAGTGTCCTCTAAGAATTGTGCAAGAGCACTTGAGAAGCTTTTTCTAGCAGTAACAGAGTTATTTGTGTAATGCGTCAGGGCAGTGGTACTGGTACAGCTGGCCTGGCGCTATGTTGTCTCAGTATAAACAGGATATCATCTGGCTGGTTTGGAAACAGCATGGTCTCAACCAAGGTTTCCACTGACTTAGTAATCTCTAAATGGTACAGTCTctacatttgttttgtcttgtttttattGTATAACTACTGTACTTTATTAGCTCACTTTACACTGTACATTTGATAAATTATGAAATGTGATGAACTGGACTATTTTCTTCCAATAGTTCCATCAATAGTTGCTGAATATAAGGATAGATATGTTCGAGACCTTTAAGTTAATGAAGTTGAATTCATGTTTGCCTCTGTGTGCATGTTTGAGAAAGAGTGTATGCTCTTGTGAATGCTGCATGTCAATTAAAAGTGTGTTTGATGG

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0004908 interleukin-1 receptor activity molecular_function

KEGG:

id description
K04386 IL1R1, CD121a; interleukin 1 receptor type I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321383 lncRNA downstream 40414 61845415 ~ 61849699 (-) True G283373
TU321287 lncRNA downstream 191794 61693218 ~ 61698319 (-) True G283282
TU321259 lncRNA downstream 200538 61653325 ~ 61689575 (-) True G283256
TU321251 lncRNA downstream 242834 61643098 ~ 61647279 (-) True G283251
TU321223 lncRNA downstream 286916 61602757 ~ 61603197 (-) True G283224
TU321562 lncRNA upstream 231756 62148317 ~ 62151490 (-) False G283541
TU321561 lncRNA upstream 233963 62150524 ~ 62151490 (-) True G283541
TU321611 lncRNA upstream 331686 62248247 ~ 62254684 (-) True G283587
TU321614 lncRNA upstream 352663 62269224 ~ 62271259 (-) True G283589
TU321724 lncRNA upstream 496155 62412716 ~ 62413039 (-) True G283697
XM_021597555.2 mRNA downstream 117141 61768503 ~ 61772972 (-) True LOC110520322
XM_021597552.2 mRNA downstream 161512 61663705 ~ 61728601 (-) True LOC110520320
XM_021597551.2 mRNA downstream 161516 61663705 ~ 61728597 (-) False LOC110520320
XM_021597553.2 mRNA downstream 184923 61663705 ~ 61705190 (-) False LOC110520320
XM_021597549.2 mRNA downstream 307053 61578579 ~ 61583060 (-) True LOC110520317
XM_036974835.1 mRNA upstream 3333 61919894 ~ 61948009 (-) False zmp:0000000936
XM_036974837.1 mRNA upstream 3590 61920151 ~ 61942087 (-) False zmp:0000000936
XM_036974836.1 mRNA upstream 3590 61920151 ~ 61956548 (-) True zmp:0000000936
NM_001124355.1 mRNA upstream 40810 61957371 ~ 61964014 (-) True il-1rii
XM_036974843.1 mRNA upstream 50067 61966628 ~ 62034002 (-) False LOC110520327
TU315276 other downstream 4300930 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 4486538 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 4592351 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 6478626 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 798014 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 3052988 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 3097698 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 3138139 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 3138139 65054700 ~ 65075985 (-) True G286638

Expression Profile