RNA id: XM_036974836.1


Basic Information

Item Value
RNA id XM_036974836.1
length 2164
RNA type mRNA
GC content 0.50
exon number 11
gene id zmp:0000000936
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61919894 ~ 61956548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTGCACAACGCTGCATTCTTTGCTTTTGAGCAGAAAGGTTTCTTAAGATCCAGAGGAAATTGTTACACATTCAGCCCAGAAACACTCCCAGACTACAGAAGAACTTCTGTTTGGGAAAACAGTGTTTTTGAGCATGTCTGATGCTTTTTAAATGTATATTCTTCAATATAGCCTTTAGGTTAAAATTGAAGATGGTGTTTTTACAGTCGTTTACTAGACAAAGTACATGGAGAAGCCTGTTTAATAGAAAAGGAATGTGACATGGACTTCAAGCTGTTCGGATAAGGCGTGGAACCAGAACTAAACTTCAGCTATGGATTGGAGTCAGATGTTGCAGATCTTCCTCTTCTCACTCATCTGTCTCACTGGCAGCTCCAAGGCTGTAGGAGAGCTCTGTAAGGACTATGGACGAGAGTTTGAGCGGGTATTTTCAGTCCCGGGTGATGCCGCCATGTTGACATCCACCCTGTTGGCCCCCAACGTGTTCAACCATCACACCGTCCCCTATAACATCTCATGGTACGACCCAAGGACTGGGAGAAAGCTGACCAGCGAGACGGGGAAAACATTGGTGCAGGGGAAGACACTGTGGATGTTTAACATTGAGATGGACGATGCTGGAGACTATGTCTGTGTTGTGAGAACTCCCTCCCAGTGCTACAAGCAGGCTACCTTACTGATTGTGAACCAGATCAACCCAGAAGAATGCGGTCGACCACAGAATGAGGTTGAACAGGTCCTGACCAATACAGCCAGCGCTTTCCTGTCCTGCCCATTGAGTGACCAGATCAGGAAAGTGGACAATTACTCCATCCAGTGGTACAAGGGATGCGAACGCATTGTGGAAGATGACCCATTGTGGGACAGGTTTACCTATGTCAGTGATGGCCAGAAACTCTTAGTAGCTCAGGTCCACCCTGAAGACCATGGATTCTACACTTGCACCATGACCTTTGACCTGGAAGGGCTCAGCGGCAGAATTTCAGAGACTTTTGTGGGTACGGTGAAAAAGGAGTATTGCCTTGTCCCCAAAGTGGTTGAACCTGCTAATAAGATCATCAAAGCAGATTTGGGCTCTTCCTTCAGTAAGATGTGTCGGGTGTTTGTGCTGAGTGTGGGGGGACAATGCGTGGACTTGAATTGGATAGCTAGAGATGACAATATTCCCGAAAATGTCTCAGAGCGAGTCTTTCAGGAATCACAAAGCgagtggagagaagaagagaagactgCTGTGTGGATTGAGCGTCAGTTGAATTTCTTGGAGGTGGAAGAGGAAGACTTTTACATTGACTACACGTGTCAGACCTGGAGCGACAGAGGCTATTATTCAGCCTCCTTCACACTCCACCCTACAGATCCAAACTACCTGCTCCCTATTGGGGTACTACTGACGAGTCTGGTATTGATGTTTACTGTTAGTGTTGTTATTTACCATCGCTTCAAGATTGACATAGTGCTGTCGTTCAGGAGGATGTTCCCATTTCTCTACACAAACACAGAGTCTGATGGAAAGCTGTATGATGCATATGTGGCGTATCCCCATCTCTCTGGGAGCGTGGCCAGTGGGGAGGTGGAAATGTTTGCCCTCCACACATTGCCCCAGGTTCTCGAGGGGAGGTGTGGCTACAGGCTCTTTATTCTGGGCCGGGACAGCCTACCAGGGGACGCCGTAGTAGATGCTGTGGAGGAGAGTATGTGGGCCAGCCGGCGTCTCCTCCTTGTCTACACTGGCTCTACGTTCTGCAGTGGAGGTCAGagtgacagcagcagcagcgatgtCCTGGAGACCTGGAAGAGCTTTGAGAGGCAGATGGCTATGCACCGTGCACTGCTGGAGGGTTCCCTTAAGGTGGTTCTGGTGGAGCTGGAAGAGATCACCCCCACACAGCTCGCCTTCTTCCCCGAGTCGGTGCGCCACCTCCGGGAGCGCCAGGGTGCTGTCTGCTGGTGGAAGAGTAGCAGGACTAGGAGGACCAGAGGGTTGAGGTGTGGGAGGTGGGGGgaagaggaggtgaaggagaagagagggtcttcaccctctttctcctcaccctctcattCCTCATCCTCACACTTCTGGAAGGAACTGAGGTATTATATGCCTGTGAGGGGCAAGAGGACAAAGTGTCCAGAGAAGAACAGTCTGTTGAACATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321411 lncRNA downstream 14957 61897733 ~ 61905194 (-) True G283398
TU321383 lncRNA downstream 70452 61845415 ~ 61849699 (-) True G283373
TU321287 lncRNA downstream 221832 61693218 ~ 61698319 (-) True G283282
TU321259 lncRNA downstream 230576 61653325 ~ 61689575 (-) True G283256
TU321251 lncRNA downstream 272872 61643098 ~ 61647279 (-) True G283251
TU321562 lncRNA upstream 191769 62148317 ~ 62151490 (-) False G283541
TU321561 lncRNA upstream 193976 62150524 ~ 62151490 (-) True G283541
TU321611 lncRNA upstream 291699 62248247 ~ 62254684 (-) True G283587
TU321614 lncRNA upstream 312676 62269224 ~ 62271259 (-) True G283589
TU321724 lncRNA upstream 456168 62412716 ~ 62413039 (-) True G283697
XM_021581389.2 mRNA downstream 3590 61890113 ~ 61916561 (-) True il-1r1
NM_001124360.1 mRNA downstream 3719 61890109 ~ 61916432 (-) False il-1r1
XM_021597555.2 mRNA downstream 147179 61768503 ~ 61772972 (-) True LOC110520322
XM_021597552.2 mRNA downstream 191550 61663705 ~ 61728601 (-) True LOC110520320
XM_021597551.2 mRNA downstream 191554 61663705 ~ 61728597 (-) False LOC110520320
NM_001124355.1 mRNA upstream 823 61957371 ~ 61964014 (-) True il-1rii
XM_036974843.1 mRNA upstream 10080 61966628 ~ 62034002 (-) False LOC110520327
XM_036974841.1 mRNA upstream 10080 61966628 ~ 62080471 (-) False LOC110520327
XM_036974844.1 mRNA upstream 10080 61966628 ~ 62081148 (-) False LOC110520327
XM_036974852.1 mRNA upstream 10080 61966628 ~ 62081148 (-) False LOC110520327
TU315276 other downstream 4330968 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 4516576 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 4622389 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 6508664 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 758027 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 3013001 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 3057711 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 3098152 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 3098152 65054700 ~ 65075985 (-) True G286638

Expression Profile