RNA id: XM_036974847.1


Basic Information

Item Value
RNA id XM_036974847.1
length 7340
RNA type mRNA
GC content 0.50
exon number 31
gene id LOC110520327
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61966628 ~ 62081171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGCTTTAcaggggagtgagtgagagagcgacaacaagagagagggaggcagggggagaatAGAGAAAGCAAGCAGCACTCTGCACTGCCAGCCGCGGTAGCTCAATATGGAGTAACCGCGTAGGCTCGACAACGACGGGAGTACAAAGAACAACCCGTTTTGGATCGAAATTACATTCACAAGGAATAAGGGATCACTTCCAATAATGAGATACGACATTGCATACACACAATCAACTTGAAGGGAATAAAATAGACTTAGCAATTTCTATGTATTATTGAAAAATGGCGAACGAGTCTCCAGCTAAAAGTCTAGTTGACATAGACCTTGCCTCTTTGCGGGACCCAGCTGGTATTTTCGAACTGGTGGAAGTGGTCGGCAATGGCACGTATGGACAAGTATACAAGggccGACATGTCAAGACAGGACAACTGGCGGCCATCAAGGTCATGGATGTCACAGAGgatgaagaagaggagatTAAACTGGAGATTAATATGCTGAAGAAGTACTCCCACCACAGAAACATAGCCACCTATTACGGAGCCTTCATCAAGAAGAGCCCACCAGGACATGACGACCAGCTATGGCTGGTGATGGAGTTCTGTGGTGCAGGCTCTATCACAGACCTGGTGAAGAACACCAAGGGCAACACACTGAAGGAGGACTGGATCGCCTACATCTCCCGTGAGATCCTCAGGGGTTTGGCTCACCTGCACGCCCACCATGTGATCCACCGTGACATCAAGGGCCAGAACGTGCTGCTGACTGAGAACGCTGAGGTCAAACTGGtgGACTTTGGTGTGAGCGCCCAGCTGGACCGGACAGTGGGCAGGAGGAACACCTTCATTGGGACACCCTATTGGATGGCGCCGGAGGTCATTGCCTGCGACGAGAACCCAGACGCCACGTACGACTACAGAAGTGACTTGTGGTCCACTGGAATCACAGCTATAGAGATGGCTGAGGGAGCTCCTCcACTGTGCGATATGCATCCAATGAGAGCGCTCTTCCTCATCCCCAGAAACCCTCCTCCTCGACTCAAGTCAAAGAAATGGTCTAAGAAGTTTTGCAGCTTCATTGAAGGCTCCCTGGTGAAGAACTATACCCAGCGCCCCCCCACCGACCAGCTGCTGAAACACCCCTTCATCAGGGACCAGCCCAACGAGAGGCAGGTCCGCATCCAGCTCAAAGACCACATCGACCGCAccaagaagaagagaggggagaaggaTGATACAGAGTATGAGTACAGTGGAagtgaagaagaagaggaggaagctcAGGAGCAGGAGGGGGAGCCCAGctctATAGTGAACCAGCCAGGGGAATCAACCCTGCGTAGGGACTTCATCCGTCTGCAGCAGGAGAACAAGGAGCGCTCGGAGGCCCTGCGCAGACAGCAGCTCTTGCAGGAGCAGCAGCTCCGGGAGCAGGAGGAGTACAAGCGCCAACTACTGGCAGAGAGGCAGAAACGCATCGAGCAGCAGAAAGAGCAaaggaggaggctggaggagCAACAGCGTCGCGAGCGGGAGATGAGGAGGCAGCAGGAGCGTGAGCAGCGGCGACGCGAGCAGGATGACAAGAGGCGTATGGAGGAGGTTGAACGCCGgcgtaaagaggaggaggagcgcaggagggcagaggaggagaagaggagggctgACCGCGAGCAGGAGTACATCCGTCGCCAgttggaggaggagcagaggcaCCTGGAGATCCTGCAGCAGCAGCTGCTCCACGAACAGGCCATGCTGCTGGTGAGACCAAACTCTGAGCACAAGTGGAAGGAGCTGGAGGAGCAGCGTATGGCCCAGAAGCTCCAACAGCAGGATCAGTCCTACCTACTGCTTCTCCAACAGCAGCCCAAACCCCTGCCGCCAGCTACCAACAGGCCTCAGTCCCCACAGCAACTGTTGATTCAAGAGAAGACCAAGTCCCCACAGCAACTGACTTCTGACCCCAAAGGCCCCGCCACAATCGGAGAGGCTGATGAGAGGTACCGTAAGAACATCCAAGGATCTCCTCAGGCTGCCCAGGTTAAGGTCCAGCCCCCAGTTCCTCCCCGCGCCGCAGAGACCGTCGCTAATGGAAACGCCCCCGTGGCCGCCCCGCCCGCCATGCACAGACCGATGGAAGCCCAGGTTCCTGTGAGGACAACGTCCAGGTCTCCAGTACTGTCATGCAGGGACTCCCCTTCCCATGGCAATGCCACACCTAGCAACCCGGTGAGCCAGAGGAAAGCAAGCAGTGCTGCAGCGGAGCCGCGTCTGCTGTGGGAGCGGGTGGAGAAGCTGGTCTCCAGGCCAggcagtggtagtagtggtagtactgGCAGTTCCTCTGGCTCCAGTAACTCCAGCTCTCACAGCGGCTCAGGGGAGAGATTCAGAGCCCGCTCCTCATCAAAGTCTGAGGGTTCTCCCCTTCAGCGcccagagcatgctgggaaaaccccagaggagaggaaggaattGGTCAGACCTAACCAACCGGTGGACCTGACGGCACTGGCCAAAGAGCTGCGTGCAGTGGAGGACGTTCCACGCCCCCACAAGGTGACGGACTACTCCTCATCCAGTGAAGAGTCGGGCACCacagatgaggatgatgatgaagaggtggaccaggagggtggggaggagtcTACCTCAGGACCAGAGGACTCTCGGGCTGTCTCTTCGAGGCTGAGCAACGGGGAGACGGAGTCTGTGAAGACTATGATCGTTCACGAGGAGGGCGAGAGTGACGCTAAAACCACACCCTGTAAAGATGGCACTCTGATCGTCAGACCGAGTGCAGGTGACAGCAAAAAGCGACCTGTCCCCAGCCCTGGTCAAGGCCCTGTCCTTGGCTTTGTCCCCAGCCCCGGGCTAATTCACCCTGCCCTCCAGGGCCACCCCGTTCTCCAAGGCCACCAGGAGAGAAATGGCTTTGCAGGCCGCATTCACCTCCTGCCTGACCTGATCCAGCAGAGCCaccactccccctcctcctctgcctcctcctccccctcctcctccagcctGACCAGCCCCACCATGTCAATGTCCCCCCAGAGCCCCCTGGACAAGCTCAGCATGCTACTGGAGAGCCATTCTTCCAGCAACAGCATGCAGAAGCAcaagtcctcctcctccttcactcccTTTATTGATCCACGCCTCCTCCAGGTCTCTCCATCCGGCGCCGCTCTCAATAACCTGGCTTTTGGGAACGACGCCAGGCTGGCAGAGGCACTGAGGGCGGACCCGTCACGTAAAGGCTCCGTGGTCAATGTGAACCCTGTCAACACACGACCACAAAGCGACACCCCAGAGATCCGCAAGTATAAGAAGAGGTTTAACTCTGAGATCCTGTGTGCAGCACTCTGGGgagtgaaCCTCCTGGTGGGCACAGAGAGTGGTCTGATGCTGCTGGACCGTAGTGGTCAGGGGAAGGTCTACCCCCTAATCAGCCGACGCCGCTTCCAACAGATGGACGTACTAGAGGGACTCAACGTCCTGGTCACTatatcagGCAAGAAGAACAAGCTGCGTGTTTACTATCTGTCCTGGCTGAGGAACAAGATCCTGCACAACGACCCTGAGGTGGAGAAGAAACAGGGCTGGGTCACTGTGGGAGACCTGGAGGGCGCTGTGCACTACAAAGTTGTGAAATACGAGAGGATCAAGTTTTTGGTTCTGGCCCTGAAGAACTCGGTGGAGGTCTATGCATGGGCACCGAAGCCCTACCACAAGTTCATGGCTTTCAAGTCGTTTGGTGACCTGGTGCATAAGCCCCTGCTGGTTGACCTGACGGTGGAGGAAGGTCAGAGATTAAAGGTCATCTATGGCTCCAGTAACGGATTTCATGCCGTTGACGTGGACTCGGGGGCAGTCTACGACATCTACCTGCCCACCCATaTCCAGACCAGTATCCAGTCCCATGCCATCATCATCCTGCCCAACACAGATGGCATTGAGCTGCTAGTGTGTTACGAGGACGAGGGTGTCTATGTCAACACCTATGGACGCATCACCAAGGACGTGGTGCTGCAGTGGGGCGAGATGCCCACTTCTGTGGCCTACATACGTTCTAACCAGATTATGGGCTGGGGGGAGAAGGCCATAGAGATCAGGTCTGTGGAGACCGGACACCTGGACGGGGTCTTCATGCACAAGAGAGCCCAGAGACTCAAGTTCCTGTGTGAGAGAAATGACAAGGTGTTCTTTGCCTCGGTGCGGTCCGGAGGAGCCAGCCAGGTGTACTTTATGACCCTGGGGCGTACCTCTCTGCTCAGCTGGTAGAGAAAGACCATGCCCCCTCTACACTGGAAACCAACCAACCGCGTTTTACCCAACGTTCAGTGATGCCAACGGACAAAAGCCAACCATCTCCGTCTTAGCTACGACCTTCGACCCGGAGCATCATGTTATATTGAGGATACATACAACATCCAGATGCCGTCTCCCCAGCCGTGAATACCAGATATGAGAATTGTTCAAAATTAAGTTAATTGATtataaaacaacaaaaataaaagggGGAACGGTTTGCCCCGCTGTGGTGCTCAACTGATTGTGGACACGTCTGTGCGGGGTCGTTGCCCTGAACACCTGTGACCTCTGTGTGTGTCGTTCCTAGTAACTGACTGTGCTGTGGGCTTGAAGTTTACTAACTACTCTCTGCATCTTCTGCTCGTATTTCAGGAACCCCCTTCCACCCCACCCTTTTCCTTAGCGAGGGAGGAGCAGGGGTGGAGCATACAGTGTTAATGCTAcagtagtgtatgtaaatgtatttCTGTTTGGTACAATGATTGCTGACTGCAAGGGGGCGGAGGGGGTTGAAGCTGTCAGTCATGGAGGAGGCGGGAGTAGAGAAGCCGAGCAAGGGAGCCAATTTGTTCGATGCCATGATGACAGAAGGTGGAAGGGTCCAAGGCGTTTTACCGTAAATCTGGTAGTATCTGAGAGGACTCAGCTGGACTGTGTGTTGATAGAGTTAAGACAGCTACAGTATTTTAATGGGCGCGGTCAAAGAAAATGATTTTATCCGGATGGACTTCAGACTAGTATTTTTTATTATAAATTCCCTAAAAAAAGTGAAACTATGTGGAGTTAATATTTCTTTTACCTTATTTTCTAAAATCACATTTGCACAGTCTCCAGTTTGCTTGATTTTATTCCAACCCACAACACATTGAAGTGTTTTAGGAGTTAGAGAGAGTGGGTGGGTTAGAAAAGGAAACCATGTCTATGTATAATAAAATGTCATTTAATCTCATCCATAGTTTCAGTGGTCATGGGAGTGGATCCCTCGGTGATCTGGCTTGGACCATCAGAGGGTCCAGGATGGAGGACATGGTCCGGATGTGAATAGACAGATATAATaaaagagagtggaggagaagggTAAGGTGatagtattttgtgtgtgtgtgtgtgtgtggttggttggttggttttaaAGGGGCCaatagatgagagaggaggggtgttGATGTACGTTTTTGTAGCAGAAAGGTTACACATGGTCAGCACAACTCAATGGACTCCTAGTCAGTGGATAGAACAAAACAGTGTTTTATTGTTCTTTTGATATTTCATTTGTATCTTTTCATGAATGCAGTGCACTAAGTGTCAAGAATGTAGAAAGAAGTATACTGTGTGGTGGTCAAAGGCATGAGACTTTTATTTGTGTTCCTTGTCTCAAGTGATTGATTTCGATGTTCAATTTCAAAGTAACACAAGTGAATACTAAATGAAGGCTCCGCTATTAAAGATGTTGATTTTCCTTTCAGAAACTCAATGTTTTAAAGTGCATCAGAGCTGGAGAGGGAGCAGCTCTGAGTTGAGACGATGCTAGGCTATAGTAGTTTTCTGTGGAGCCAGTATGCTCACAGTAGCCTAATCAGCCTTATTCACCAACAGGGCTTAGTCCTTAGTGTAACTGTAAACAACATGACCACGCTTAGCTAAGTCGTCTTGAGCACGGTACATTTGTCCATCTTGTGCAATGTCAGCTTATCAATCAATGGAAGGcaataaaatacaaaacaactTGTTTCAAATCAGAGGAGAGCAGTCTGGTCACCAGGAGCCAGAACACAGGTGACCTGACCATTGTGATTCTACAGCTCTCGTCTGACGGTGTTCATGACGGAAACCCACTTtgggcagaatcctttttttcacTGTTAAAGGCTATAGTCTGTACAGATATGTAAAGAAGACTATTCAATTAACTGCAATATCCCCTGCTACGGCTCTCCCACAACAGTGGTGTATCTAACCTTCGTTGACCATGGTGACAAACAagaacaacatcaacaacaggcTATAATCTTGTTTTGTAATGTGGTGATGGATCAAAGCTATTTCACCCAAGTGGACAGACTCTGTACACTGACTATGTGTCCGACAGTGGGTCAATGATCTCTGAGTTGGGTCTTTCTCGTACTAACAGTCATGTCATTATGTGTGTAGAGCTGTGGGAAAGGCATTGCAAATTACATGTCACAGAATTGTTTCACGAGCCAACTTGTATATGGAAAAAGAAACCAGTTTGAAGAGCGAACCCCaatgctgtatgtgtgtgtttaatagCCTCCCAATGCTGACCCACTATGTCTTTCTGGTTGCATCAAGGCCTTCATGAGGCATAAGTTACTTTATTAAGATTATGGTTATTGATATTCTTATTAATGGAAAAAGATTTAACATTTTTGCAATCTGAAAAGCAGTCGCTTGCTGATTTAACGTTTTTAAAAAAGTGCTAAGATGGCAACATTAAATGTTTTTCTTTAAATTACAAAACCATTTCGTTGATCTCACTTGAAGCATTTTGTATTCTTAAGTTTTAACTTGGTTAAGAAGCTTAATAATGGTTTCTGTAAGTTTATGTACTCTGCAGTGGTTGAATATTATAATGCTCACGTTAGGTCGAGAAAATTGAAATGTTTACAGAGGCAATGTTTTGTTACACTAATGTGCAtcatatttatgtttttttgttgcttGTTTTGTATTGAACGTTATTTTAGTCAATAATCCTAAATGATGCCATTGTTTTTCTCGCTCAAATAACCAACTCACAACACAATAAAGAATACACTTGCAATATTTAATTTTCCAGATGTTCCCATAACATTAATCCAGCGTTGTGGGGACATTGTTGTGATGTACAGTCCGTTTCCTGCAGGCTTGGATGTCAGTCAGGTTTGGGTGTTTTTCTCCAGTGTTTCTGCCATGCTACTCTAATTTATGTCCTCTCTATGTATGACAGGAAGTCCTGTATTTTCCtgaagtttttttttctttgaatAAACTAAAGTAATTTAAAGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321411 lncRNA downstream 61434 61897733 ~ 61905194 (-) True G283398
TU321383 lncRNA downstream 116929 61845415 ~ 61849699 (-) True G283373
TU321287 lncRNA downstream 268309 61693218 ~ 61698319 (-) True G283282
TU321259 lncRNA downstream 277053 61653325 ~ 61689575 (-) True G283256
TU321251 lncRNA downstream 319349 61643098 ~ 61647279 (-) True G283251
TU321562 lncRNA upstream 67167 62148317 ~ 62151490 (-) False G283541
TU321561 lncRNA upstream 69374 62150524 ~ 62151490 (-) True G283541
TU321611 lncRNA upstream 167097 62248247 ~ 62254684 (-) True G283587
TU321614 lncRNA upstream 188074 62269224 ~ 62271259 (-) True G283589
TU321724 lncRNA upstream 331566 62412716 ~ 62413039 (-) True G283697
NM_001124355.1 mRNA downstream 2614 61957371 ~ 61964014 (-) True il-1rii
XM_036974836.1 mRNA downstream 10080 61920151 ~ 61956548 (-) True zmp:0000000936
XM_036974835.1 mRNA downstream 18619 61919894 ~ 61948009 (-) False zmp:0000000936
XM_036974837.1 mRNA downstream 24541 61920151 ~ 61942087 (-) False zmp:0000000936
XM_021581389.2 mRNA downstream 50067 61890113 ~ 61916561 (-) True il-1r1
XM_021597575.2 mRNA upstream 9113 62090263 ~ 62102123 (-) True LOC110520328
XM_021597577.2 mRNA upstream 45488 62126638 ~ 62129589 (-) True LOC110520331
XM_021597590.2 mRNA upstream 83693 62164843 ~ 62169717 (-) False LOC110520337
XM_021597589.2 mRNA upstream 83693 62164843 ~ 62171802 (-) False LOC110520337
XM_021597591.2 mRNA upstream 83693 62164843 ~ 62174314 (-) False LOC110520337
TU315276 other downstream 4377445 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 4563053 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 4668866 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312498 other downstream 6555141 55410143 ~ 55411487 (-) False G275250
TU322065 other upstream 633425 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 2888399 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 2933109 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 2973550 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 2973550 65054700 ~ 65075985 (-) True G286638

Expression Profile