RNA id: XM_021597579.2


Basic Information

Item Value
RNA id XM_021597579.2
length 2089
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC110520332
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62121199 ~ 62126483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATTACACCCCTTTCTGTTTGTGCATTAATGTGTTTGCTTGAGTGTATTCTATTTTGTTTgtatgtcagtctgtgtgtgtggctgtgggaTGATTGTGGGGATGATTGCTGTCTCAAATGCTTTTGTGTGACGTGTGCTGTTTTACTAGTGTGGTGGTGATTGGGAAAGCATCTGATTGTTGATTGTAAGTTTCCATGAGGGAAACACAAGAAGacaaaatattcctccacaatgAATGTCATTCAAATAAAAAACTGAGGaaagatagacacacacacaaaacacacacaagggTGTCCATCATGTCTCTGGGTTGGCTGTAGTTGGTCCCTCAGTCCAGATGAAAGTGCTGGCAAATCCATACAATGGCTTATTAACAGTATAAATCTCCCCCACCTGTCTGTGAGGCTCGTCTCTAAAATGAACTGAAGAGTCCTTTCCAATATGGTTGATATAACATACAATCACTGCTCAGGGGACCTACAACAAAGACAAACATACAGTAAAGGCCTGTTCTAAATGTAATGATCAATATGTTGAGCTGAAGTGTAACTGCAAAAGCTCTTGTTTTTCTATTGGTTCCATCATAGAGCGAAGTGACTATAGGATTTCATAAGCATTCATAACCATGTTATATGCAACCATAACTACTAATTAACACAAACTGAACTGACCCAGAATAGAGACGTTATATGTTCGAGGGTGGGGGTCTGGGTCTCCCCCTTGAGTGTTCTACGCTATTTTCCATTCAAGGACCACCGGGCAGGTACAGCTAATCCACAGTCTCTCTGGAATATTGTTTCAGATTCATCCAGGAGAAACTCGATCCACTGACCCACACATTCAGCTTTCATGCTTACACAGGGAAACCGGGCCCCAGCAGTCACAATAACTCTCTGTAGTCAATCTAATGAAAAATACTAATTTATCAGTAAATGTACACAACACTGATAAATTGATGTAGTGAGATTAGAGGAGACAAATTATATGATAATAAATGTTGACATTTCAACTCTGTGTCACTTCCACAGGATCACAGAGTAAAAAGGTTGTTAACACAGTTAGGCCTACATAATACATTTATTTGGTAGCCTACTTCATGGTTTTGACTGACTGAACATGAGCATCATCTGGTCATCCAAAGATAATTTCCTTTAATCAAGTGCACTGGGAAAAAAATGGAGACCAATTTTATAACCTCCATTTTGATTTTATATTCAGTGGCATCCtgtttttgatgaatttattttatttagtttcCGATCTAAATGTATCTAAAAACCATTATCAAAATTGACTTACACAAGTTGTTATTGTCTGACAGGCAAGAGAGAGGACACCTGCGCTCTAAGACTCAGATGATGATCAAGGAGACCAGTGGGATGTTGATTGGTCACTTCTACGTGGGAGATGATGCTTCTCCCATCAAAGTTATAGCCTATATAATTCTCTCGGTTGAGAAAGTCATTAGTGTTGAGTTCTAGGACCTGATTTTGCGATATAACAAGACTTACTCCTGCAGCACCaaaccacacacagagaagctATACTCTCACCAAAGCGCATGAGAATCTGATTGCTCGAGATGAGCGCAACGTATCTGCGACAACTTTGCCTCCTTCATTTGGTCTGGTGCCTTGGATGTTGGAAGGTGACAGAAGCTAATCCCAGCAAAGAGTGTGAACATGGAATTGTTTTGACAAAGGGTCCTGGGATCCAGACTGATGTGGGAGATATGTGGAGAGATCAGAATGAGCAGCAAGTTCAGAATGTATTCAAAAGATTCCTGTTCCACTATTCAAAGGCAAACTCAGTAGGCTCTATACAGCATGCGTCCCATTCAGTGCACCCATTGATGCGCCTGTCACCAAAACTGTCTCAGAGGAGAAAGAAGCAGCTCCTGCTTTTGAAGCTCCGGGATCTCCCTGAAGGTGTGATGTAAAAATCAGACTGTGGAATAACTTGAAGGCAGACACCAGCAAGTTGCATACCCCTGAACACAAAATGGTAGACAGACAGAAGCAGCATTCTCAGCTCTCGCTGGACTTGATATTTTTGAGAAATAAATTAAGATAAATGTGACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320770 lncRNA upstream 205 62113453 ~ 62121013 (+) True G282805
TU320677 lncRNA upstream 118196 62002667 ~ 62003022 (+) True G282725
TU320646 lncRNA upstream 138737 61982071 ~ 61982481 (+) True G282712
TU320640 lncRNA upstream 157152 61957388 ~ 61964066 (+) False G282707
TU320587 lncRNA upstream 271544 61845290 ~ 61849674 (+) True G282658
TU320751 lncRNA downstream 161 62126644 ~ 62130112 (+) True G282786
TU320783 lncRNA downstream 38400 62164883 ~ 62174362 (+) False G282815
TU320782 lncRNA downstream 41669 62168152 ~ 62174362 (+) True G282815
TU320790 lncRNA downstream 43263 62169746 ~ 62171892 (+) True G282822
TU320878 lncRNA downstream 177000 62303483 ~ 62320393 (+) True G282907
XM_021597566.2 mRNA upstream 280012 61836665 ~ 61841206 (+) False LOC110520325
XM_021597567.2 mRNA upstream 280012 61836666 ~ 61841206 (+) False LOC110520325
XM_021597568.2 mRNA upstream 280012 61836666 ~ 61841206 (+) True LOC110520325
XM_036974832.1 mRNA upstream 288805 61773435 ~ 61832413 (+) False LOC110520324
XM_036974863.1 mRNA downstream 2551 62129034 ~ 62156042 (+) False LOC110520333
XM_021597581.2 mRNA downstream 4366 62130849 ~ 62156042 (+) False LOC110520333
XM_021597582.2 mRNA downstream 4366 62130849 ~ 62156042 (+) False LOC110520333
XM_021597583.2 mRNA downstream 4366 62130849 ~ 62156042 (+) True LOC110520333
XM_021597592.2 mRNA downstream 48102 62174585 ~ 62180282 (+) False cnot11
TU320641 other upstream 159743 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1084113 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1227440 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 1227440 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1363868 60740239 ~ 60757350 (+) True G281591
TU320785 other downstream 67121 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 241131 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 579848 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 889843 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 999407 63125890 ~ 63128958 (+) True LOC110520364

Expression Profile