RNA id: XM_021597583.2


Basic Information

Item Value
RNA id XM_021597583.2
length 4945
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC110520333
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62129034 ~ 62156042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttgggttaaatgcggaaatAAGACGCTCGCTGTGTAGGCTACAGTTGCAACCGGTGTGAGAGAAAATATGAGCACAAGACGCCTGCTATCTCGGACAGCGCTTGAGATCAGTCATGGATGATTCTGAAATCACCTAATTTTCTCCGACGCGTGGAACTGTTGAAGAAGTGTGCATTCTATCAATAGCACAACAAAAACTACAATCGGCTTTGTTTTGTTTTCGTCCATTCTCTTTCGCAGAAGAGGGCATGGGGACACAGGGGGGAAATTTACAGGTCTTCTGGTGGGAGCTCTGGACTCAGTGCTGGACTCCAATGCCCGGGTCACACCGTTCCGTATCCTACTACAGATGCCTGGGTCACAGGTCAGCTGGACAATAGCTTGTGGTGCTGCTGTTGGAGAGATGAACAGACATTGGGACTGGCTGGTCCAGAACctactccactctctctcagtgtTTGAGAACAAGGAGGATGTCGCCAGCTTCGTAAAAGGGAAAGTCAAGggtCTGATAGCGGAGGAGGTAAGGGGGAGGCAGGCGGCTCAGGAGGAGGAGCCTGAGAAGTTCCGGGAGGCGCTGCTGAAGTTTGAGCTATGTTTCGGCCTGCCCTCCTCAGAGAAGCTGGTCACCACCTACTCCTGCTGCTGCTGGAAGGGGCGGGTCCCCCGGCAGGGCTGGCTCTACCTCAGCATCAACCACATGGCCTTCTACTCCTTCCTGTTGGGAAAGGAAGTGAAGTTTGTGATCCCGTGGGCGGAGGTGACGAGGCTGGAGCGGGTCTCTACGGGTCTCATGACGGACATGGTGCGTGTGATGACGCGGCGGTGCCAGTTGGACTTCTCCATGTTCCTGAGCCTGGATGAGGCGTTTGGGGTCATTGGTCAGCTGGCTGACATCGCCCTGCGACGCCTGCTGGACAGTGAAGGCCTGGAGCTGGACCGAGTCCTCCAGCAGTCCTCCAACATAACCAAGAGGGTTCTGGAGGAGCAGGCGTTAAGGACGTATGTCCTGGCTCTATTTCGGCTACCACGGGGCGAACGTCTTCAGGAGGTGGCGCTGTGTTCAGTGTGGACGCCCCATGCCCGCTGTCACACGACAGGAACACTCTTCACCACCGACAGCTACCTATGCTTCGCCAGCCGAGAGGAGGGCCACTGCAGCCTGCTTATCCCTCTCTCAGAGGTGATCTCCATAGAGAAGGCGGAGAGCACCAGCCTGCTGCCAAACCCAGTGATCGTCAGCGTGAGGGGTAAGAAAGCCTTCCAGCTGATTGAGCTGCAGGACAGAGACAGCCTGGTGGACGGCCTGACATCACGCCTCAGAGCCCTCCAGTGGAAACACTCCATGTTCCGCAGCAAGAAATCTCTGACCTCCTCGTCTCCCTACTACACCTTCTGCTATGACACCATGTACTGTGATGGGGAGGATATCGAGGAGAGAGCACTACGTCAAACAGTGAACACAGAGGCTCTGATGGCATGCTATCATCACTCTCAACCTGACCCCAACAACAGCACGGCTACCATGGAGCAGGTGAAAGAGCGTCTATGGGAGGACCACTTCCCGGAGTACGGTCGAGGTGTCCACATGTTCCGCACAGAGAAGATCCAGAAGCTGGTTGCCATGGGGATACCAGAGTCGCTACGGGGAGAGCTATGGATGACCTTCTCTGATGCCTCATCAGAGTTGGCATCCCACCCAGGCTACTACTCGGGGCTGGTGACAGAGTCTATGGGGCAAAGCAGTCTGGCCACGGAGGAGATCGAGAGAGACCTGCAccgctctctgccagaccacccCGCCTTCCAGAATGTCAAAGGCATTGCCGCGTTGCGCCGTGTCCTCACCGCATATGCCCACCGCAACCCCAAGATTGGCTACTGCCAGTCGATGAATATCCTGGCATCTGTGCTGCTGCTGTACACTAAAGAGGAGGAGGCCTTCTCACTGCTAgtggctgtgtgtgagagaatgcTACCTGACTACTTCAACCGCAGAGTTATAGGTGCTCAGGTGGACCAGTCAGTGTTTGAAGAGCTGATCCGGGATCGTCTTCCCGAGCTGGCCGAGCACATTCCcgacctctcccccctctcctccatctccctgtcctgGTTTCTCACCCTCTTCCTCAGCGTGCTTCCCTTCCGCAGCGCTGTCTGTGTGGTAGACTGCTTCTTCTTTCACGGCATCAAAGCCATCTTCCAGCTGGGGCTAGctgtgctggatgctaacgctacgGCACTGTGTGCTAGTGCAGACGACAGCCAGGCACTCATGATCCTCACTGGTTTTCTGGACCAGGTGAAGTACGATGAGGATCCAGCTCCCCctacccctcaccctctctcgtctcagagtggggaggaggagggcagaCCGCCTGTTAAACAACACACCCTGATCACTGACCTCATCGCTGACTCCTATGAGAAATTTGGAGACCTGACGGTGAGACAAATTGAGAAGTTGCGATGCAGACACCGGATCCAGGTTCTCCAAGCACACGAGGACACCACCAAGGAGAATGCGCTCAGGGTGGTGACCccagatgtctctctctcccctgaaaACCTGGCTGATGTCTACGACCTCTTCAAGACAGAGCACTTCATCAACCTGTACTGGGGCGATGGGGGCACCACATTGGCCCTCCAGCACCATGACCCAGGCCGGCCCTATGTGGAGCAGTACAGAGTGGACCGGGTCCAGTTTAAGAGCCTGTACATGCTGCTGGTTCCCTGGCTTTGTGGCTTTCATACTGACACCGTGGCCCACCGGACCTTCACACTACTGGACCAGGACAGAGACTCACTCATCACCTTCAGAGAGTTCGCTGGGTGGCTGGATACGCTATACTTTGAGGAACTGAATGAAAAGGTCAGACTACTGTATCGTTTGCACATACCTCCAGCTCTGACTGAGAGTGAGGATGACCCATCTCCACTGAAGAGCCCTCAGCTGTCCACTACCGGACCACTCCATGTAGAGCTGCCCAATGCTCCtgatgtgtgtgttcatgttgaaGGGGAGATGAGAGACTTTCAGGAACAGTTGAAACAGATGTTGAAAGACCTGGctaaagagaaggagaaggatgtGGAGCAACCTGTACCTCCAATGAACCAGAGGGAGTTCATCCAGTTCTGTAAGACCCTCTACAGCATGTTCCATGGCAACCCAGACGAGAATGAGCTCTTTCAGGCCATCGCTACAGTGACCAGCCTGGTGCTGCAGATCGGCGAGGTCGGGCACCGCAGCCGCTGctcagggtcagaggtcagcagCAAGGGTGGGGCCGGGGACGAGGTAGAGGACGATCACAGGGAGGGGAGTCAAGAAGAACATCCCGTCTTCagcaccaaagaagaagaagaaggagagagaaaggaggggaccAGCAAGAGTTCAGGGTCTGAGAGTCAGAGCGAGTGGGCGGTCAGCTACGCTCAGATCCTGGCTTCTCTCCTCACAGAACAGCAGCTAGTCAACTTCTTTGAGAAACCGATGGACCTGTCAGCAAAGGTGGCTGAGGCAAAAGTGAAACAGTACCATGAAAGGGCTGGTCTGCTTATGCTCCAGCAAGGGACCAGCTGATTTCAACATGACCAACAGAACCTCGATGTGAGAACCATAGTGTGACCCAATACTGGGTTTCCAATCTAGTTTCTTATCTAGTTGTCCAGGCACCTTTGTCCCCAATAAGTGTTGTCTGTGTCCTCCGTCTTAAAAGGATGAGTGGGTACCAAGAGTCCGTATGTGCCTATATTGAGTCGTTGGTCGAGCACAAAGGAGAAGTAATGTAGATGTGTAGGTCTTCCTCTCCTGATGTAGCCGTGAAGAAAGGTGGCCTTGTCTTTTGGGATCAACAACTGTCTGAAAGCAGGTTAACCAAAACCAAGACATGCATGATAATCAAGAGACTACATGATGCATCAGTCATAATCATATATACTACTGTGAGAACGTCACACACCATGCACTACACATAGCACCATGAAAAGGGTTATTTTTCGTTCAGTATTTATACACACGTTTTCATTCTGCTTCATCCGGTCTATGAAATGGGAACAAACTCAAATGTGCCCAGTTTTAGTGACATTTTACTTGACTTAACATTGGCTGCCTGGTTGGTGATACACTTGTTTACCATATTGTCCAATCAAGTAGAGCAGACAAGTGTTATTTTCTGCCCAAATATGTTATGCGTGTACGCCTGCAGTGTATCATTTTGGCAAGCTTTTTCATTTTCCTTTTTTTATATGTAGCCCAAGGAGTCAAGAACTATTAACTGCCAAATGTTTGTCATACAATAATGGACATTGGAATCTTGCTTTTATGTGCGACACATTAAAAATGTGCACCTATATATTTTGTCAAATCACATTCGTCACAGTTTACAGCAAGTATAAAAGGTGCAGCGAAATACTTGCGCTAGCTCCTCAACAATGCAGTACATTAATCAATAGTGTTTATCCTGTATTGATTGAATGATTTTGTTCTTTAAGAAGTCTTATtttaggtgttctaaaactgtttgagcCTTATTATTCTACCAAGCATATTTCTTCATTCCAGCCTTAAGTCTAAGTGACCAGTGTTATGTTATAGACTAAAGTCCTACACACTTTCTTAAAATCAGTTGATACTAAACAAACAGAACTGCTGTACCTCAGATTTAGTTGAATAAGTCTTCTATATAGAGAACTTGATTTTTCCATTTCAAATCAGTGGTGGTGTTAAATTTAGGTTTTGGTTATTCCAGAACCAGTCTGATGCCTTCTAATTGACTACAGATGCACCTTGATGTTATTCGTAGTGCACACTCACAAGTTCACTTGATGTGCATTCTCACAAATCAGGCCATTTATCACTTCTTTAACGTGTCTGCTGCAAAATATCGGACATGGTTTGTTTGTAAATCATTAAAAACAATGTTGCA

Function

GO: NA

KEGG:

id description
K19951 TBC1D8_9; TBC1 domain family member 8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320751 lncRNA upstream 737 62126644 ~ 62130112 (+) True G282786
TU320759 lncRNA upstream 5786 62122795 ~ 62125063 (+) True LOC110520332
TU320770 lncRNA upstream 9836 62113453 ~ 62121013 (+) True G282805
TU320677 lncRNA upstream 127827 62002667 ~ 62003022 (+) True G282725
TU320646 lncRNA upstream 148368 61982071 ~ 61982481 (+) True G282712
TU320783 lncRNA downstream 8841 62164883 ~ 62174362 (+) False G282815
TU320782 lncRNA downstream 12110 62168152 ~ 62174362 (+) True G282815
TU320790 lncRNA downstream 13704 62169746 ~ 62171892 (+) True G282822
TU320878 lncRNA downstream 147441 62303483 ~ 62320393 (+) True G282907
TU320950 lncRNA downstream 253181 62409223 ~ 62409441 (+) True G282976
XM_021597579.2 mRNA upstream 4366 62121218 ~ 62126483 (+) False LOC110520332
XM_021597580.2 mRNA upstream 4897 62121199 ~ 62125952 (+) False LOC110520332
XM_036974864.1 mRNA upstream 4897 62121210 ~ 62125952 (+) False LOC110520332
XM_021597567.2 mRNA upstream 289643 61836666 ~ 61841206 (+) False LOC110520325
XM_021597592.2 mRNA downstream 18543 62174585 ~ 62180282 (+) False cnot11
XM_021597593.2 mRNA downstream 18544 62174586 ~ 62180282 (+) True cnot11
XM_021597594.2 mRNA downstream 37245 62193287 ~ 62200069 (+) False LOC110520339
XM_021597595.2 mRNA downstream 37568 62193610 ~ 62200069 (+) False LOC110520339
XM_021597596.2 mRNA downstream 44789 62200831 ~ 62203750 (+) True LOC110520341
TU320641 other upstream 169374 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1093744 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1237071 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 1237071 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1373499 60740239 ~ 60757350 (+) True G281591
TU320785 other downstream 37562 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 211572 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 550289 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 860284 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 969848 63125890 ~ 63128958 (+) True LOC110520364

Expression Profile