RNA id: XM_021597593.2


Basic Information

Item Value
RNA id XM_021597593.2
length 2092
RNA type mRNA
GC content 0.49
exon number 7
gene id cnot11
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62174585 ~ 62180282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTACCGGGGTCGAGTCAAAGGTCAAAACTCAACGCTGCAATGTTGTGAACGAAGTGGAAACTGATGGGAGAACAGCTGAGAAAAGCTAACTTACTTCTTATTAAACATTTGATAATAATTACATTCATGCTTTTACGACCAGTAAGTCTGGTATGCATTTTTTTAGTTGATCAAGGTCGAATTTGTTTAGCTGTATAACTTACTTTTACAATGACTTTGGTGACAAGCTAGCTAGTAAGCTAACTAGCATTTTCTAATTTATCTAGCTGCCCATATCTGCACTCCCGTGGAGTTTGTGGAAATGTATCTAGCTTCGTTTTAAGTATGAACTGAATAACGCGACCTACGTACAATTATAAAAGACTACTTGAAAGCAGTGATTTATCATTTTGGTCACATAGCTAAAAGCTAGATATCAACAACATAGGTACAATGACACTTGCCCCGAAGGAGCTCTCCAACCTCTTGGGAATCATCTCAGAGGAAGCTTGCACCAACACTTTCGAAAGTCTATCATCCGCTTTTCATCATTACTTCGCGAAGGCCGAACATTTCCGAGTAGGATCGGTTTTGGTGATGCTACTGCAACAGCCGGACCTTCTGCCAAGCTCTGCACAGCGCCTGACTGCCCTCTACCTCCTCTGGGAGATGTACCGCACAGAGCCCCTGGCCGCCAATCCCTTTGCCGCTGTCTTTGCGCACTTGCTGAACCCCTCCCCAGTTGGGGATGAGCAGGAGAAACAACTGTCTGGATTCCTGCCACCCATTACACAGCCCGAGAAGTTCTTCCTCTCCCAGCTAATGCTGGCGCCTCCAAGGGAACTCTTCAAGAAGACCCCCAGACAGGTGTCCTGCATGGACGTGGGGAACATGCCACAGTCCATAGACATTAGTGGGCTGCAGTTGGCATTGGCAGAGCGCCAGTCAGAACTACCCACCCAGAGTAAGGCCAGCTTCCCCAGCATCCTCAACGACCCGGATCCAGATTCTTCCAACTCTGGGTTTGACAGCTCAGTGGCCAATCAGATCACAGAGTCTCTGGTCACTGGGCCTCGACCTCCACTGGAGAGTCACTTTCGTCCAGAGTTCATCCGGCCGCCTCCTCCCTTGCACGTGTGTGAGGATGAGCTGGCTTGGCTAAACCCCACGGAGCCCGACCACCGTGTGCAGTGGGACCGCTCCATGTGCGTGAAGAACAGCACGGGTGTGGAGATCAAACGCATCATGGCCAAGGCCTTCAAGAGCCCACTGTCTGCCCAGCAGCAGTCACAGCTCCTGAGTGAGCTGGAGAAGGATCCAAAGTTGGTGTACCACATCGGTCTGACCCCGGCCAAGCTGCCTGACTTGGTGGAAAACAACCCTCTGGTGGCCATCGAGATGCTTCTCAAACTGATGCAGTCCAGCCAGATCACGGAGTACTTCTCCGTCCTGGTCAACATGGACATGTCTCTGCACTCCATGGAGGTGGTCAATAGGCTGACAACGGCTGTGGACCTCCCTCCAGAGTTCATTCACCTGTACATCTCCAACTGTATCTCCACATGTGAACAGATCAAAGACAAGTACATGCAGAACCGCCTGGTGCGCctagtgtgtgtgttccttcagTCTCTGATCCGGAACAAGATCATAAACGTGCAGGACCTGTTCATCGAGGTGCAGGCCTTTTGCATTGAGTTCAGCCGCATACGGGAAGCAGCTGGCCTCTTCCGCCTCCTCAAGACCCTGGATACAGGAGAAATCCCCCCAGAGGTCAAACCTGCCAAATAACGCTTTCATAGTACATAGAACGTGGCAGTAGCCTGTTGTGCCAAATAACACCCCCCAGGTAGTAAGCCCACAGAGGCACAACCCGCTAAATAGCGCCCCAACCAAGAGAAACTGACCAAGGCTGTATAACCACCCAGACAATCCTCACGATCTCACCAATACCCGCTTGGAGTCCAGCTTTGAACTCAGTTACTGTTTTTCGTCTCTCTTTTCTGGACAAAGATGGACATATTTTGAAAATAGATTTTGAAACTGTTTTTTTCCCTCCATAGATTGATGCTTGTTGGTTTTGTTTCATTAAATGGATATGTAATGAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320783 lncRNA upstream 224 62164883 ~ 62174362 (+) False G282815
TU320782 lncRNA upstream 224 62168152 ~ 62174362 (+) True G282815
TU320790 lncRNA upstream 2694 62169746 ~ 62171892 (+) True G282822
TU320751 lncRNA upstream 44474 62126644 ~ 62130112 (+) True G282786
TU320759 lncRNA upstream 49523 62122795 ~ 62125063 (+) True LOC110520332
TU320878 lncRNA downstream 123201 62303483 ~ 62320393 (+) True G282907
TU320950 lncRNA downstream 228941 62409223 ~ 62409441 (+) True G282976
TU321741 lncRNA downstream 243132 62423414 ~ 62425547 (+) False LOC110520349
TU321739 lncRNA downstream 245411 62425693 ~ 62430935 (+) True LOC110520349
TU321806 lncRNA downstream 336519 62516801 ~ 62518422 (+) True G283779
XM_036974863.1 mRNA upstream 18544 62129034 ~ 62156042 (+) False LOC110520333
XM_021597581.2 mRNA upstream 18544 62130849 ~ 62156042 (+) False LOC110520333
XM_021597582.2 mRNA upstream 18544 62130849 ~ 62156042 (+) False LOC110520333
XM_021597583.2 mRNA upstream 18544 62130849 ~ 62156042 (+) True LOC110520333
XM_021597579.2 mRNA upstream 48103 62121218 ~ 62126483 (+) False LOC110520332
XM_021597594.2 mRNA downstream 13005 62193287 ~ 62200069 (+) False LOC110520339
XM_021597595.2 mRNA downstream 13328 62193610 ~ 62200069 (+) False LOC110520339
XM_021597596.2 mRNA downstream 20549 62200831 ~ 62203750 (+) True LOC110520341
XM_021597598.2 mRNA downstream 69177 62249459 ~ 62254811 (+) True med4
XM_021597600.2 mRNA downstream 74678 62254960 ~ 62272829 (+) True LOC110520344
TU320641 other upstream 213111 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1137481 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1280808 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 1280808 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1417236 60740239 ~ 60757350 (+) True G281591
TU320785 other downstream 13322 62193604 ~ 62196951 (+) True LOC110520339
TU320883 other downstream 187332 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 526049 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 836044 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 945608 63125890 ~ 63128958 (+) True LOC110520364

Expression Profile