RNA id: XM_021597594.2


Basic Information

Item Value
RNA id XM_021597594.2
length 2113
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110520339
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62193287 ~ 62200069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgattacattactgagtttgtgTAATCCAAaaattacgttactgattacaattgtGGACAGGACTCTGCTGAATCGGGAGGTCGACTCTCCACCACTTACATAGAGGCCAGGGAAATCTCAGCGGAAATAGAAGCTTTCACCGTGGAGTCGCTATGCCATCAAAACGTGCAAGGCTTCTTCGGAGGCCTTTGCCCCCTAAAAAGAATCCCCCCATTGTGAAATCACTTCCTTCGCCTATACTTTCAGGTACAATCATAGACTCATTGCCCTCAACAGAGAGAAGGGATCTGAAGGACAGTGCCACCGGGCGGAGTGAGTCAAGCTGCCACATGCTTCCTCTTTGGGACTATGACCCTGCAGCCTTTAGGGTGGCTCCCACTCCTCTGACCTCGGTCCCATCCATGCTAATACCTGAAATAATTGAGGGATTCCCCTGTAAACCTCCACGCACTCTCCCCAAAATCCCCCTCCTCGACCTCCTCAAGACAGACCCCAGATACATCCCCTTTCCCCCTAGTTTTAGCTTCAATGACTTTCTGCGGGACCCTAATGGCGGCTGTGGGGCTCAGTCACTAGAGGGCCTGAAGAAAGTGGCACTGTCTCGCTGCAACTACAGGAAGCTGGTTGGGCTTTTCCTGATGGAGCTGCACAAAGGGCAGCAGACTGAGGTGTCCAAGCAGCTGATGTCCACTGAGAAATTGCCAGAGGCCAAGAGCAGGATCCCACAGAAGCAAATCATATGCGAGCTGGCAGCATTGATCCGTATGGAGGTGCAAACTCAGATGATGTGTCGGCGGAGCTGTTTGGGAGATGGGACCTGTAGGTCTGAACAGAAGTCTGTGGAGATATGGGTACCCCCAGGGGAAAGACAAGCTGTTCAGAAGCAGGGAAATCTATACCTAGGAACGGAGGTGATCCTGAACTCTGTGACTACCAAGCACTTCCAGGGCTCTCGGCGGACCCACTCCCCGTTCAGGCACTCTGGAGAGGGCATCAACCCATCTGAGCTGGCCATACTGGACTGTCTGACAGAGGGGGGCAAGGCACTCACCCTGAAGGCCCACTTCATTGCCCTGCTTCCTGATCTGACTCCTCTGGCCCAGAGCCTGCTCTACCTCAACCTATCCTTCAATGACTTCACTATCTTCCCAGTGGAGGTGTATGAGCTCACACAGTTGGAGGTGCTGAAGATGAGAGACAACCCCATAGAGGAGATTCCTACCGGCATCCACAGACTCACCAGGCTCAAAATCTTTGTCATCTCCTTCTGCAAGATCACCTCCCTGCCGTCAGAGCTGTACCAGCTGCCCACCCTGCAGTTTCTAGATGTATCCTACAACCTTCTCTCATCCCTAACAAATGACATCAGAAAACTCAGGACTCTGGAGTACCTGAATGTGGAGGGGAACCAGCTGCCTGGCCTGCCCTGTGGGGCCCTGCGCCTCTCCCTCACCCAGCTCAGGATCTCCAACAACTACATGCACCCCTACTTTTGGAAGAGCTGCAGCTGGAACTCTCCCCAGGATCTGCAACACTCAGCCACTATgaccctctctctcacagacacctGTCTGCGCTACGCCAGCCTTCCCCCTGAGGCACAGATGGCCCTTAACAGggtgggtgtgtgtgactgctgtagGGGTCCTATGTACGGACCTGGACTCAAGGTAATCCGTCCCTGCTACAATATCTTCGGACTACACAGGGTGCCCTTCATCTTCTATGCCTGCACCCCAGCATGCCACTGGAACTTCAAGATCCAGACCAAGAGTCTCTCCAGTCTTCTGTATGGAGAAGACACAACTCACAATAGTGAACAACTAACATGACTATGAAGGAACCAATACTGAGGCTACTGTATCTTGTCCTTAATAGCCAAAGACCTCTGAATATCTATCTCATCAGCTCTACTAATCTTGTGCCAAATTGTAACCTTACCATAATGTCTACTGATGTCTCTGTCTTTATATAACCTTGAGTAGTTGTCTGCAAAACATGTATTTTGCAAAGCAAGTGCATGTGAAAACTCCCATAATTATGGCACTTTTAATGTCTTTACATTTTCCATTGACCTCCAAttaaaataaagtatttctgaATACTAGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320783 lncRNA upstream 18925 62164883 ~ 62174362 (+) False G282815
TU320782 lncRNA upstream 18925 62168152 ~ 62174362 (+) True G282815
TU320790 lncRNA upstream 21395 62169746 ~ 62171892 (+) True G282822
TU320751 lncRNA upstream 63175 62126644 ~ 62130112 (+) True G282786
TU320759 lncRNA upstream 68224 62122795 ~ 62125063 (+) True LOC110520332
TU320878 lncRNA downstream 103414 62303483 ~ 62320393 (+) True G282907
TU320950 lncRNA downstream 209154 62409223 ~ 62409441 (+) True G282976
TU321741 lncRNA downstream 223345 62423414 ~ 62425547 (+) False LOC110520349
TU321739 lncRNA downstream 225624 62425693 ~ 62430935 (+) True LOC110520349
TU321806 lncRNA downstream 316732 62516801 ~ 62518422 (+) True G283779
XM_021597592.2 mRNA upstream 13005 62174585 ~ 62180282 (+) False cnot11
XM_021597593.2 mRNA upstream 13005 62174586 ~ 62180282 (+) True cnot11
XM_036974863.1 mRNA upstream 37245 62129034 ~ 62156042 (+) False LOC110520333
XM_021597581.2 mRNA upstream 37245 62130849 ~ 62156042 (+) False LOC110520333
XM_021597582.2 mRNA upstream 37245 62130849 ~ 62156042 (+) False LOC110520333
XM_021597596.2 mRNA downstream 762 62200831 ~ 62203750 (+) True LOC110520341
XM_021597598.2 mRNA downstream 49390 62249459 ~ 62254811 (+) True med4
XM_021597600.2 mRNA downstream 54891 62254960 ~ 62272829 (+) True LOC110520344
XR_002472968.2 mRNA downstream 81650 62281719 ~ 62286818 (+) True LOC110520345
XM_021597601.2 mRNA downstream 167420 62367489 ~ 62406396 (+) False LOC110520346
TU320641 other upstream 231812 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1156182 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1299509 60891524 ~ 60893778 (+) False G281714
TU319500 other upstream 1299509 60891524 ~ 60893778 (+) True G281714
TU319365 other upstream 1435937 60740239 ~ 60757350 (+) True G281591
TU320883 other downstream 167545 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 506262 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 816257 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 925821 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 1067050 63267119 ~ 63312394 (+) False G284537

Expression Profile