RNA id: XM_021597600.2


Basic Information

Item Value
RNA id XM_021597600.2
length 4224
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110520344
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62254960 ~ 62272829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTAAGGGGCACTTGGTTTACTACGCATGCGCCCAATTTATTGTTCGCTTCAGGGAAGGAAACATGGCGGCGTCCCTGATTTGTGGCCGATTTTCGGCTAGCCTGAGAAATTCTGGGGCCAGATCGACACTTACCACTGCATCCAAGgTGCTGGGTGGTTCCTCTGGCCTGCTTGGGCCTCAGCAGCAGTCCCCCCacctgcagcagcagcagaggaacCTCTCCCTGCACGAGTACATGAGCATCGGTCTGCTCAAAGAGGCTGGCGTCTGTGTGCCCGAGGGCAAGGTGGCCAGCTCACCCGATGAGGCCTACTCTGTTGCCAAGGAGATTGgcaCCAAGGATCTGGTGGTGAAGGCCCAGGTGTTGGCTGGAGGCCGAGGCAAAGGCACATTCGAAGGAGGGCTGAAGGGAGGAGTGAAGATTGTTTACTCGCCAGAGGAGGCCCGGGACATCTCCTCTCAGATGATTGGTCGTAAGCTGTACACCAAGCAGACAGGCGAGCAGGGCCGTATCTGTAACCAGGTGTTTATCTGTGAGCGCAGGTACCCCCGCAGGGAGTACTACTTCGCCATCACCATGGAGAGATCCTTCCAGGGCCCTGTGTTGATTGGCAGCTCTCAGGGGGGTGTGAACATTGAGGATGTGGCGGCGGAGAATCCCGACGCCATTGTGAAGGAGCCAATCGACATCATGGATGGAATCAAGATGGAACAGGCGGTTTCGaTTGCCACGAAGATGGGCTTCCCTGCTGCTCTGATCGGCGACGCAGCGGCTAACATAATCAAGCTGTACAACGTCTTCATGAAGTACGATGCCTCCATGCTAGAGATCAACCCCATGGTGGAGGACGCCTCTGGCCAggTGATGTGCATGGACGCCAAGATAAACTTTGACTCCAACGCGGCGTATCGCCAGAAGAAGGTGTTTGACATGCAGGACTGGACCCAGGAGGATGCCAGGGACCGACAGGCAGCCAAGGCTGACCTCAACTACATCGGCCTGGATGGATCCATCGGCTGTCTGGTAAATGGGGCTGGTCTAGCCATGGCCACCATGGACATCATCAAGCTGCATGGTGGCACTCCTGCCAACTTCCTGGATGTGGGGGGCGGAGCTACAGCCCACCAGGTGATGGAGGCCTTCAAACTTATCACCTCCGACAGGAAGGTGCAGGCCATCCTGGTGAACATCTTCGGTGGCATCATGAGGTGTGACATCATTGCTCAGGGCATCATCATGGCTGTTACAGACTTGGACCTGAAGATCCCCATTGTGGTACGGTTACAAGGATCCAGAGTGGACGATGCCAAAGCTTTGATCGCTGCTAGCCCACTGAAGCTCCTGGCCTGTGACGATCTGGACGAGGCTGCTAGAATGgtTGTAAAGCTTTCTGAGATTGTGTCGTTGGCTCAGGAGGCTCATGTGGACATCTCCTTCCAGCTGCCACTCTAAGCCATGCCCCCTAAACCTCGACACCCCACCCCCAACCTTTCGAACAGCAAGAAGAGCCTCTCACTACTGAGCGAATACTCCAATACAACACAGCCCATCAACTTCTCTGTTAGttctgattctctctctgtggcaAGGCTCCAAAATACACATGTGCATACACACCACTAATGTGGGAATTTTTGCTCTCCTAATCTCGactttcctccctctctgttttgtTATGTATGCCATGGCTAGTGTGTATTGTCTGTTCAAATGCAACACATTAACATGCTTTTCAGATCAGGCACGGGGGCGTTCCTTCAGATTATTCCATTATTACTCGCTCTGTTTTCACAATGATTCCTAGTTACTTcctcttcccccacctctctccttcagctCCCAGAATGCCTAGCTCTAGTCATAATGCACAACCCCCCCAACCTTGCTTGTTTCTTTGAGAGGGTGATAGACCTATCTATTTACCGGTACATTTTGGGAGAATTTCTGCTGTCTGTAAAGGTACAGCTAATTCCCCTTAGGCTTCGTTCTCCTGGATCACTTGGCTAAAGAGAGTTATGTCGCTGTCAGTCATAGTCCTCTCCCCTTTAAATCTCTTCCATCTGCCCCTACAGGAGAGGCTTTTACTGAGTGCTTCTGAGAATGGGAGATGCGATGGGGGAAGTTGGCCACTATGCAGAATGTAGCTCATCAGAAGCTAGGGGATAACACTTGAGCTTATACATTGCTGTTAGGAGGACCTCTTATGTCACTCATTTAATTTCCATGCAATTTTGAATGCATAGCTGGATAAAAGCTTTCTAGTACTCTCGTTTTGAACTAGTAAGAGTTCTATTCTTTGTGTGTGTTATCAAAACTACTGCCTATCTGGTTGTCAGCATGTTTGTGTATTTGTCTCTTCCTTCCCCTCACTCTCCCCTATAAGAGCCTGCTACAGTGTATGTGTAGTCTGCCACTATGTCATGGGGAAAACCTTTTTCACTTGGGTGTGTGCAGTGTCCTCTCAACTAAACTGTTAAAAGATTGTAATTAAgtcctctccatatctctctctctccattcctatctctctctgttactccctagCCCTCAGAACACAGAAACAGTTATTGTGAGTTGTCAAGACATTTATTATATCTTGTAAATAACGAGACCGCCGTTATCTTCTGTAAAATATTTATGCTTCTCTTGgggagtaaaaaaaaagaaaaaagaaatgtttgttttagtTTTGTTGCACTTGTACGGTACTTACAATGTGAAAGTTGTCTGCATCTCGTATGGCTGTTTGGCAACAAATGATAACAAAAGCACAAAGAAATATAAAGACCAGGCTCATGTGATGCCAAATTAGGTTCTATACTGTGAGACATTAGCATAAGTGTCAGATTCTTACATTTTCTACATGCCAGACAGTACATGTATTTCAGTTGCATAATAAGTCATTTTGGCTTCTATTTTAATTTCTGTTCTAACCAATGGACGATAAAGTTGTATTCTATTCCATCTCCTAATCCACTGGGGATACGTACTATGTTAAAAGTTTAAAAACAGGATTGTGTCAGAGCAGGGTTACCTCCTGTTGCCAGCACCGTCTGTCTCTGTATGGCACATGTGGACTGTGGCATTGGTTTTGACACGCTTCAAGGATACATTCGCCTTGAGCATCCTTGAAGCCAGGGCCCACAGCATATCAGGAGCTAAAGGCTGTGACCCAGTGGGTTATCGCTGTGTGGGTGGACTGAGTTGGTATACACTGTACTGTAATGAGGTGATGGGAGTTTGATTGCTGGAGACGATATTTTGCATTGCTTTAAGTACGTACCCGCCCCTTGGATCCTTTTCCACAGAGCTGAAGATTTGAATCACATTCTGCGCAAGTGTTTCTTTACCTCTACTTTACTCACACATTTTTGTGGTGACCCTCCCTACACTTTTCTCCCTGTCGATCGTGAATGATTTGTTTTACCAGTGAAACGTCCATTCAGCATCTGAACGCCAACCATTTGATCTCAGTTTCATGGAGTTATGCATTTTGTGTTGTTTAGAAGCAGTCCACAGTTTTCTGAATGATTTTCAGTAAATACATTTTCAGAGCAGATGGTTTTAAAACGGTAGCATACCTTCTGCTTTGTTTCTATCAAAGCACATATTTGGCCTAGTGTTATTCTCTGAGTTTTGGCCACGAGAGAGAAATGCAATCATTCGCACAATCATCCTAAAATCTCATGaggttttttttgtttgtcttgCAGTATCATTATACTATGCTATTGTATTTGGTTCTGTTATTCAGCTTTGATGCAACTTTATTCAACAAGCACCATTTTGCCACAGTAGCCTGTTTTCTAGGAGTAGAGCGCAGAAGCTTCGGGACCTTTAGCTGTCAGGAAGATGGGCCCAGAAAAGTTGGATTCGCAGCCACTCTGTTGCTGGACGTTTCTTTAAATGTTGAGAAAGAAGATGAAAACGATGTAGAGTCTGTTATTGTTCACTTACTgcttcaaaacacacacacacacacacaccatgattgTTTCCCAGAGCTAGCAGTTGAAGACTGGACTGCCTGGCCCTGATACTCTATTTGTCCTTCATAAACCTGTTCATGCTTGGGATAAGAATATGGGTAGCCTGAAGGCAAGAACAACACAGGAATTATGGAGATGTTCCCATATTTTAAAGGTAGGGGTGTGTCTCTCATGGCTTCATACATGCGACAGTGGCTGCCATCATAAAAAGCTATTGATGTAAAATGCAT

Function

GO: NA

KEGG:

id description
K01900 LSC2; succinyl-CoA synthetase beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU320783 lncRNA upstream 80598 62164883 ~ 62174362 (+) False G282815
TU320782 lncRNA upstream 80598 62168152 ~ 62174362 (+) True G282815
TU320790 lncRNA upstream 83068 62169746 ~ 62171892 (+) True G282822
TU320751 lncRNA upstream 124848 62126644 ~ 62130112 (+) True G282786
TU320759 lncRNA upstream 129897 62122795 ~ 62125063 (+) True LOC110520332
TU320878 lncRNA downstream 30654 62303483 ~ 62320393 (+) True G282907
TU320950 lncRNA downstream 136394 62409223 ~ 62409441 (+) True G282976
TU321741 lncRNA downstream 150585 62423414 ~ 62425547 (+) False LOC110520349
TU321739 lncRNA downstream 152864 62425693 ~ 62430935 (+) True LOC110520349
TU321806 lncRNA downstream 243972 62516801 ~ 62518422 (+) True G283779
XM_021597598.2 mRNA upstream 149 62249459 ~ 62254811 (+) True med4
XM_021597596.2 mRNA upstream 51210 62200831 ~ 62203750 (+) True LOC110520341
XM_021597594.2 mRNA upstream 54891 62193287 ~ 62200069 (+) False LOC110520339
XM_021597595.2 mRNA upstream 54891 62193610 ~ 62200069 (+) False LOC110520339
XM_021597592.2 mRNA upstream 74678 62174585 ~ 62180282 (+) False cnot11
XR_002472968.2 mRNA downstream 8890 62281719 ~ 62286818 (+) True LOC110520345
XM_021597601.2 mRNA downstream 94660 62367489 ~ 62406396 (+) False LOC110520346
XR_002472969.2 mRNA downstream 150591 62423420 ~ 62426300 (+) False LOC110520349
XM_021597610.2 mRNA downstream 261817 62534646 ~ 62542031 (+) False rubcnl
XM_021597609.2 mRNA downstream 261818 62534647 ~ 62542031 (+) True rubcnl
TU320785 other upstream 58009 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 293485 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1217855 61033766 ~ 61037105 (+) True G281996
TU319499 other upstream 1361182 60891524 ~ 60893778 (+) False G281714
TU320883 other downstream 94785 62367614 ~ 62408857 (+) True LOC110520346
TU321897 other downstream 433502 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 743497 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 853061 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 994290 63267119 ~ 63312394 (+) False G284537

Expression Profile