RNA id: XM_021597609.2


Basic Information

Item Value
RNA id XM_021597609.2
length 2546
RNA type mRNA
GC content 0.50
exon number 14
gene id rubcnl
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62534646 ~ 62542031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCCTTTGACCTTTGATAAAAACATTTATTACACAAAGACATAGCTCACTCGCTATTTGAACTTggagtttgtaaattcagagcttaTTTAAAAATAGCTTATTTATCTAAAGTTATCATTCACTTCATCATTTGTTGAGGAACACCCACAGAGAGACTTCTTGCGTCTGGTTTGAAAAGGGCATTGCTTTACCACAGAAATTTCAACCCAACATTAAATACAGGAAGTAAAGATATCCTCCGACCCACTCCTTGCTCAACAAGTTGACCGTTTTACAGCTGTGTTATTTCAGATGTCATACGACAAAAAGACTCAGGTTCAACCATGTCCTTCATTTTGGAATCAAACAAAATGAAGCTCTACAGAGTCAATGTCCTTCATGTCCATCCGTCAGTCAAACAGTGAGCTCTGACCTGCACTTTATTGTCCAACTCTAATATGGACTCACAGGATATCAAAAAGgtGGTCAGTCGAGGCACTGCCTCTCCTCTACGGAAGTCAAACAATGTGAGCTGGTATGTGGACACTGTCCCCACATCCCCCTATCTAAGTCCACCACACGGACACTGCACTGACACAGAAAGCAGCGGGGAAGAAAAGAGCACAGGGCAGTCCtctcatgatgatgatgatgaaggacACTTTAAGAGTAATGAAGCACCAGGGAGTTACTTAAACAGGGAGGACCCCTCTCTGCTGACCCCAGGTGATGACCAATATCACCTGCCCAGAAGTAGCCCCGTTATCTCCCACAGGAGGAAGTCCTTAACATGGCATGGAGATACAGGGCTGTCTCTGTCTGCATTGCCCCCTACTACTGTGGCCCCTCTGGGTCTTAGTAGTGACCCCCCATCAACATCTGACCGATATCATCTTCATCTTACTGAGCCCCCACTGGCAGCAGAGAGGTCAACTGGTACTGTAAAGGCAGAGTCTACCCCCTGTCCCTGTCCTACTATATCTCAGTCACATAAGCCACGCTGTGTCTCCATCTCTGCCAACCTGAACCGCCTGCTTACCAGCGGGCTCCATCTGCCCTTCAGGGGCTCCCAGGGGCCAGGGCTGGACCAGGAGGAGGGTCCCCGACTACGCTCAACCTCTGATGCCCATCCACAATTAGTGCCTATTAAGGATAAAAGACAAAGTGATATTACACACTGCTCTGCAGACATTATCAAGACTGGCTGTGACCTGGACAAGGAGAATGCTCATTTCATAGTGGTGGACATGGTGCTGGAGGCCTTGGAGGGGGTGAAGTGGGCTGTGAGTCTGAGTCAGAAGAGCTGTGGGGCTATGGGGAACCATACAGAGGCCTCAGAGGACTCAGGGGCCCAAATCTGCATCCACCCCTCAAAGACACACTCTCTTGTTTCCACTGACAGTGGATATGAAGGTTGTGGCGCAAACAATAGACCAATAACCAGAGGCGCTAATATGTCCTTTAAAAGTTCCATGGGTTTTCCCATAATGCGCTGCTCTGCTGAGGGCCTAGCCCAGCAGCTGGTGTGTGACTTCAGGAAGCAGTGGTTTCCCACACAGGAGCTGAAACGCGGCCGTCAGAGCATCAGAACCTCGCTGCAGGAACTTCCTGGAGGGGTTTGTATGGTGAGTGATGCCCGTCTTAGTCTGAGTGAGGAGATCAGACAGAGAACCAGGATGAGGGGAACTCTGAACTGGGCCCCACCCCGGTTCCAGATCATCTTCAGCGTCCACCCCACCCAGAGGCGCAGTGAGGTTGTTGCCTCCCAGCACTTCCTCTGTGCAGGCTGTGGAACTGAAATAGAACCCAGATACATCAAGAAGCTGCGCTACTGTGAATACCTGAGCAAGTACTTCTGTGACTGTTGCCAAGGCGGTGCTGAGTCTGTGATCCCAGGCCGGGTGCTGACCCAGTGGGACTTTGGAAGGTACCCAGTCAGTGATTTTTCCAAGCAGCTGCTGGACTCTGTGTGGCACCAGCCTCTCTTCGACCTGACCTGTGTTGGCAAGACCCTTTACAGCAGGGTGCGAGAACTGGACAGGTTCATGGACCTGCAGGAGCAACTACTAGGCATTAAAAGACTGCTGAAAGCATGCAGATTATCTGAGGGGGTCCTGAAGGAGTTTGAGCAGCTTCCTGATCACCTGACACAAGAGCCACACCTGTTCTCCATGGATGACCTCCTGAGGGTAAAACGAGGTCAGCTGGTGCCGCTGGCCAGGGCCGTGCTCCGGGTGGCCATCGCCCACGTGGAGAGCTGTCAGGTCTGCCTGGCTAGAGGCTTCATCTGTGAGTTCTGCAAGCAGAAGGATGTGTTATTTCCCTTCCAGAGTGAGACCTGCACACGCTGTCAAGTGTGCAAGGCCTGTTTCCACAAAGACTGCTTCAGAGATGAGGAGTGCCCTAAATGTGCACGGATCCAATGTCGAAAAAAGCTGATGGACACGTTCTGCCTCTAGAGTACATGTTGGAAGTGTGGGAAAATATTCTCACATTCTTACATGTGTTTGTCTTTTGAATCTGAATACAGAGTATTCCAAATAATAAAATGCTGTGCATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321806 lncRNA upstream 16225 62516801 ~ 62518422 (+) True G283779
TU321739 lncRNA upstream 103712 62425693 ~ 62430935 (+) True LOC110520349
TU321741 lncRNA upstream 109100 62423414 ~ 62425547 (+) False LOC110520349
TU320950 lncRNA upstream 125206 62409223 ~ 62409441 (+) True G282976
TU320878 lncRNA upstream 214254 62303483 ~ 62320393 (+) True G282907
TU321835 lncRNA downstream 34452 62576483 ~ 62577684 (+) True G283802
TU321833 lncRNA downstream 36424 62578455 ~ 62579127 (+) True G283800
TU321848 lncRNA downstream 56719 62598750 ~ 62605356 (+) True LOC110504388
TU321851 lncRNA downstream 107456 62649487 ~ 62650344 (+) True G283817
TU321867 lncRNA downstream 112899 62654930 ~ 62655154 (+) True G283833
XR_002472969.2 mRNA upstream 108347 62423420 ~ 62426300 (+) False LOC110520349
XM_021597601.2 mRNA upstream 128251 62367489 ~ 62406396 (+) False LOC110520346
XR_002472968.2 mRNA upstream 247829 62281719 ~ 62286818 (+) True LOC110520345
XM_021597600.2 mRNA upstream 261818 62254960 ~ 62272829 (+) True LOC110520344
XM_021597598.2 mRNA upstream 279836 62249459 ~ 62254811 (+) True med4
XM_021597612.2 mRNA downstream 1546 62543577 ~ 62547782 (+) True dhrs12
XM_036974865.1 mRNA downstream 56646 62598677 ~ 62612475 (+) False LOC110504388
XM_036974868.1 mRNA downstream 56646 62598677 ~ 62612475 (+) False LOC110504388
XM_036974869.1 mRNA downstream 56646 62598677 ~ 62612475 (+) False LOC110504388
XM_036974872.1 mRNA downstream 56646 62598677 ~ 62612475 (+) False LOC110504388
TU320883 other upstream 125790 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 337696 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 573172 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1497542 61033766 ~ 61037105 (+) True G281996
TU319500 other upstream 1640869 60891524 ~ 60893778 (+) True G281714
TU321897 other downstream 164300 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 474295 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 583859 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 725088 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 848900 63390931 ~ 63391284 (+) True G284599

Expression Profile