RNA id: TU321848


Basic Information

Item Value
RNA id TU321848
length 5241
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC110504388
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62598677 ~ 62612475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGTCCTGTGAAGATGGCGACTACCATTAAACAGGCGTTGCTGGATTTCCTAACTATTTAAATTAAAGGAATTGGAGAcgtagAGTGAGAGACGAGGGCCAGGAGAACAGTGCTAGTGGCCAGAGGTTTTCAGGCCATCACTCACCCCCCACACAGAGCTGATAAAATGGAGTGTGCAATGGACACTCGGCAAGAGTTTCACCAGCAACTGGAAACAGACACCCATGCCCAGACATGCTCAACTTTGGTGAATAGTAAGTGTGTTTTTTTAAACCTCCTGCTTTGGGCTGCATGTGTAAAtgtgcagtatatacagtaccagtcaaaagtttggacacacctactcattctagggtttttctttattttactatttcctacattgtaaaataatagtgaagacatcagaactatgaaataacacatatgtaatcatgtagtaaccaaaaaagtgttaaacaaatctaaatgtattttatatttgagattcttcaaagtacgtagccaccctttgccttgatgacagatttgcacactcttggcattctctcaaccatcttcatgaggaattattttccaatagtcttgaaggatttcccacatatgctgagcacttgttggctgcttttccttcactctgcagtccaattgatcccaaccatctcaattgggttgaggtcaggtgattgtgaaggccatgTCATctcatgcagcactccatcactcttatttggtaaaatagcccttacacagcctggaggtgtgttgggtcattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaagcgGATGGGACGGTgaattgctgcagaatgctgtggtagccatgctggttaagtgtaccttgaatttgaaataaatcacacactgtcaccagcaaagcaccatcacaccaccacctccatgcttcacagtgtaaCTACACATAAAGAGATCATCCATTTagtctcacaaagacagaggCTTTtaacccaaaatctcaaattaaGACTAACGGCCCTCATGAGCGCCAGTTTCataatagcgcttgatggtttttgcgactgcactttaagaaactttcaaagttcctgaAATTTTTGAcaaaccttcatgtcttaaagtaatgatggattgtcatttatctttgcttatttgagctgtttttgccataataaggacttggtattttaccaaataaggctatcctctgtataccacccataccatgtcacaacacaactgattggctcaaatgcattaagaaggaaagaaattgcacaaatgaacttttaacaaaggcacacctgttaaaacCCTCTTACAGCTCCCCCCcttactttgtgcaatttccacctgaagacatacccatatctaacagcctgtagctcaggcacagaaccaaggatatgcatattcttggtaccatttgaaagaaaacactgaagtttgtgtacatgtgaattgaatgtaggagaatataacacaatagatctggtttagatagaacaatgaaaaaaaaacatatgttttttatttttgtatcatctttaaaatgaacaagataaaacattcagataggatgatggggacaatttcagtgaaaaatataagagggcaacagtacttgtgcaaagtttcagaatgataacttctaAAATGAGTGTgcttacatgacatttatcatgaagtcacccaggtgtcccacacaagtagcccaaatgtacccaagtggccaaattggtgaaggtatacattttgaaacaaaaaactatatacaaaataccaaaatggtattctaacacccccccccccccccccccccccacccatttacaaaataacatgggtaactatttaaacactttcaatatttggaagaccctcagtcctctatcaaatcaaatcaatttatatagcccccgcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctgggaaaaactcactagaaaggcaaaaacctaggaagaaacctagagaggaaccaggctatgaggggtggccagtcctcttctggttgtgccgggtggagatcacagtggttgtagagggtgcaacagggcAGCACCtcgagtaaaaatgaacagtttagggttccatagccacaggcagaacagttgaaactggaacagcggcaaggccaggtggactggggacagcaaggagtcatcatgccaggtcctgatgcatggtcctagggctcaggtcctcctccgagagaaagagagaattagagagagcatacttaaattcacacaggacactggataagactcccattcggagtcagtgtcactgtgaaagaaaatgttcagttagaatagtttcacatatgagccctgtatcaacaggtataataaacagatatatatagagagttgaaggttgaatatattaggtTGAATATAGTATtattacctgctagatctactgtctcttatattatgacatttcagctagatctactgtctctattatattatgacagaccagctagatctactgtctccatttcactttggccattgatgtggtcctgccctctcctcaacagcctcaaataggctatttcatgtgggttggggtggggcggcagacacacgtaatgtcatgaaatgtgagatgcatGTTTATAAATtgcttctaaaatgtaaaaaaaaatcacaaataatattttatattattcatttcaaacaagggcattagcatgataagaacttaccagtccaaaacgatgtcctctcccgttcaaaaaatattcctccacaatcgctaagTGAATCATCCTACAAGAATCTCtctcaccttcccaatcaatttattctaaaattgtgtgaacatctgtatatctagacttagatttagctttccctgacttagtcgccataatgattgatatataaacagctgaatctgcgcgttcaccaaacaatgcagtgcgtaacatgtgtttctccttccggtatgaaacttcaatagcgaatgactcactttacgctggagcttactacatgggttggtcttgcaacacataaacatggcgtattgccgtttagctcagctcattggctatctacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcgaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaatttttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgatttcgcaaggcactgtacccagctagatttcaaaacgatcagtggtcattgggttaaaagacagtcaatcaacgaaacagcgggcaaatcattggtgcacaatgatgtcatgacttgttgtcttcaaatcggtttctttcagtcagtACATCCTGCGAAATGGCCCATcatgtttgattgtgttacaaacaaaccagttgattgcagtgaaaccaaacatgactggaaaagtcacgttctgtgtgggttatttacctggaatgtgtcgtcgaaaatggaatgagacggaattcacgacacaagcggttcacaaaatgttttgtgttaggctataaaaacgggTTTTATCAAACAAaggatcattcattgtgtaacaatgagcattggaattgcaaacagacaaagatcgtcaaaggtaaactttttattttaatgcagttgtGATTAGGTTACGCCTGTGAtggttaaatgtttttttttaatggggttctatgctcagataatcgcatcgtattctttcgcagtaaatgcttttttaaatctgaccgcagttggattagcaagattctaggctttcgatacacgtgagacacttgtattttcatgaaagtttaatatgactatttatgtagcgatcaccgtatgttgtgggatttcagcccgctagcgggttccgtgcgcagagaggttaattgaaatgcattccaggtgaccctctcatgaatctggttgagagaatgccaagaatgtgcaaagctgtcattaaggcaaactgtggctactttgaagaatctaaaatatatttggatttgtttaacacttttttggttactacatgattccatatgtgttcatagtttttgatgtcttcgctattatgtTGCACATCTTTTAGAATTTTGAACAACGTTACCTGACACTCTTGTCCCTGCTCCCCTTTTTTCTTCTGCTGCTGTGGCTGGAAATATCTCacctgaggatttaaaaaaaattgaagacAGATAAATGTAGCTATCTTGCTTGCACTTTATACAGTTCcaaacaaactagctagctaacttgctagACTAGTAACTTTAGTTAATCATGTTTCTATCATCAACATACTTTTGGATATTTGTTAGCTAATTGCCATTATAATTGTGGCAGCAATATTATAGAGCTAAATTATGTTAGTTTTTAGGTTATATCTATCTTATGTAGTTaactagttggctagctaacgttagtcaaaCAACCTAACTTACCTTTCTTGCAGTTTCTCATGCAGGATCACTCTGAGGGGATTCAAGTGATTTGTGTTTCAAGCCGCAGGGCTTCTGTATTGCGCACTGGTCACTCGTATACTGGTCCCTGGCGTGCCGTTTCTCGCACAGGTGTATTCTGAAGTGATTCAAGTGAATTGTGTTTCGCGCCATAGAGCGTCTGTATCGAGCATGGGTCACTCGTGCATGTGTCACTGGCACGGGTGTTTCTTGAGTTGTAGGCTGCCTGCCACAGCTCACAGAGCTAAATAACCTTCAGAACTGTGTTGaacccagacagattatttttttACCAAGAAAAGTGAATGTGCTTTACAGAACTTTATTGAAACTATGTTTGGTATTTATTTTGGTGTGGTGGAAATCATTCTGCCATGGAGCAGTGCAACACTTGAGTGAACCTAGAGGAAACCCTGCCCCAAGTAAATGTTTGTTGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321833 lncRNA upstream 19623 62578455 ~ 62579127 (+) True G283800
TU321835 lncRNA upstream 21066 62576483 ~ 62577684 (+) True G283802
TU321806 lncRNA upstream 80328 62516801 ~ 62518422 (+) True G283779
TU321739 lncRNA upstream 167815 62425693 ~ 62430935 (+) True LOC110520349
TU321741 lncRNA upstream 173203 62423414 ~ 62425547 (+) False LOC110520349
TU321851 lncRNA downstream 44131 62649487 ~ 62650344 (+) True G283817
TU321867 lncRNA downstream 49574 62654930 ~ 62655154 (+) True G283833
TU321871 lncRNA downstream 58024 62663380 ~ 62663709 (+) True G283836
TU321875 lncRNA downstream 64855 62670211 ~ 62670488 (+) True G283840
TU321896 lncRNA downstream 107787 62713143 ~ 62713848 (+) True G283860
XM_021597612.2 mRNA upstream 50968 62543577 ~ 62547782 (+) True dhrs12
XM_021597610.2 mRNA upstream 56719 62534646 ~ 62542031 (+) False rubcnl
XM_021597609.2 mRNA upstream 56719 62534647 ~ 62542031 (+) True rubcnl
XR_002472969.2 mRNA upstream 172450 62423420 ~ 62426300 (+) False LOC110520349
XM_021597601.2 mRNA upstream 192354 62367489 ~ 62406396 (+) False LOC110520346
XM_036974879.1 mRNA downstream 17563 62622919 ~ 62648515 (+) False LOC110520352
XM_036974880.1 mRNA downstream 18060 62623416 ~ 62646952 (+) True LOC110520352
XR_005051351.1 mRNA downstream 93531 62698887 ~ 62701213 (+) True LOC118964306
XM_036965040.1 mRNA downstream 100095 62705451 ~ 62712740 (+) False LOC110504398
XM_021597616.2 mRNA downstream 177890 62783246 ~ 62813081 (+) False LOC110520355
TU320883 other upstream 189893 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 401799 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 637275 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1561645 61033766 ~ 61037105 (+) True G281996
TU319500 other upstream 1704972 60891524 ~ 60893778 (+) True G281714
TU321897 other downstream 100975 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 410970 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 520534 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 661763 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 785575 63390931 ~ 63391284 (+) True G284599

Expression Profile