RNA id: XM_036974880.1


Basic Information

Item Value
RNA id XM_036974880.1
length 3869
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC110520352
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62622919 ~ 62648515 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAAACACACTGAaagaacgacacacacacacacacaacagtattTCTAGTATAGCTGTTACCATTTACACCTCTACGTCTTCAGGATCCCATCCATACAGAGGCCTACTGCTCCTACCAGCGTTCTAGCTCTTGGGGGCCACAAAGTCAGATTTGTGCAGTGTATAATTTGTTTATAGAACCAGATCGTCTATGTAGGGAGAATCATCTTTGTTGTGTGGCAtcgtgggttagggttagagttagggtagcgTCATGGGAGGGGACATGAATCACTGAGCTGACATTAAGGGTTAGGGATTGAGGTGACTGGGTGAGTCATGTCATGTCTctctcactcatacacacacactgtccaccgGAATGGCCCCAGGAAAGAATACAGACATAGGGTAGTTATTGGAGACAGAAAAACACACTAATGTGATGTCATCTTGTGACTTAGTTTCATTGAAGGTTGTTTGTcacaaagttgtgtgtgtgtgattgtatgtaTTTTACCGTTGGTGCTGCAATGATACAATGTGTGGTTTTGGCAAAGCCTAGTGTTTAGAAGATATCCCATTCCATTTATGTTCCATCTTGTCTGAGACACAGTTATCCCAACATGGATTCAGAAGTTAAGATGGGCTGTGTTGTTGTGATTACTGATAGCCtgtcctgtggtgtgtgtgtatgtgtgtgtctgtcccagCTGATGAGGGTGCATGAATCTATTGGCTGCAGGCTCCATTCAACACTGTCCAATAgcatctggagagagacagagagagagagagagagaaagagagcgagaaagatgtGAACGTCGTAGTTTTTTCTTCTGTTAACGATAATCACGTCCTGTACGGTATTCAGTTGTTGCGGGGTTCAGACCACAAATACTTAGGCTATTCCCGGGAGCTCACGGCAACGGTGGAATTTACCCCAGGCACGTCGCTGGTGCACGAGGCTCTGCAGTCATCGACACACGGTCCCAGGATTTCTCTCAccgctctcctgtcctctctccccatcttctttTCTGTTTTCTTCGCAGTGAGGGATGAAACGCTCTGTCAGCTGACATTTTTACTGCAGCAGCTGCGTGAACAGACCAATGGAGCAATGACGTGTGTCGgcagAACAGTGTGACTGTACGAAGAGAACCGGGAGGTGACTGGCTGacccagggaggagagagacatattctgagacaaatacacacaaaaaacTGAGCagggctgtgtgagtgtgtgttaaacTCTCAGACGGAGTCCTGATCTAAACCGAACGCCGACACTCCCACatgtctcccccgtctccccccaCCCCTATCCCCTCTCTGCCCTCCTATCTACTGTGTGTCCTCTCCATGTTCCTGTCCCTGTCCAGACTGAGGGgcatcctcccccctctcctctcccttgtccTGTCCCTCCCCCCTGCTGCTAGCCAGTCAGTCATCACCACGTCCCAGGGCAGACTGAGGGGTCAGTTGACCCCCCTGCCTTCTGACCTGCTGGGCCCTGTGGTCCAGTACCTGGGGGTCCCCTACGCCCGCCCCCCCACCGGGGAGAGACGCTTCCAGCCCCCCGAGCCCCCACTGTCCTGGCCAGGGGTGAGGAACGCCACCCAGTTTTCCCCCGTCTGTCCCCAGCCTGTAGAGGAACACAGCCTGCTGACAGAGATGTTACCTCTCTGGTACTCTGCCAATCTGGACATAGCCAGCACATACCTGTCACAGCAGAGTGAAGACTGCCTCCACCTCAATATATACGTCCCTACTGAGGAAGACATCCATGATGAGGGCGGTCTGCGGCCAGTGATGGTGTATGTCCATGGAGGTTCTTATTCTGAAGGGAGCGGCAACATGATGGACGGCAGTGTCCTCGCTAGCTATGGAAACGTCATTGTCATCACAATCAACTACAGGCTGGGAGTACTGGGTTTCCTCAGTACGGGTGACCAGGCAGCTAAAGGCAACTATGGTCTGTTGGACCAGATCCAGGCTCTGCGTTGGGTGAAGGAGAACATTGCTGCATTCAGCGGAGACCCAGACAGAGTCACTGTGTTTGGCTCTGGGGCTGGAGCCTCCTGTGTCAGCCTACTAACTCTGTCCCACTACTCTGAGGATCTGTTCCAGAAGGCGATCATCCAGAGTGGGACAGCCCTGTCCAGCTGGGCGGTCAACTACCAGCCAGGGAAGTATGCAAGGCTGCTGGGGGACAAGGTGGGCTGCAGCCTGGAGGACTCATCAGAGCTCATCGTCTGTCTGCAGGGGAAGACCTACCAGGAGCTGGTGGAACAGAATATCACTCCAGCTAAATACCACACCGCCTTCGGACCTGTCATCGACGGTGATGTCATCCCTGATGACCCCCAGATACTCATGGAGCAGGGAGAGTTCCTCAACTATGACATCATGCTGGGTGTGAACCAGGGGGAGGGGCTTCAGTTTGTTGACGGGATGGtggacagtgaggatggtgtctCCAGCGACGATTTTGACTTTGCCGTGTCGGACTTCGTGGACAGTCTCTACGGCTACCCGGAGGGGAAGGACACGCTGAGAGAGAGCATCAAGTTCATGTACACAGACTGGGCCGACCGGGAGAACCCTGAAACACGGCGGAAGACGCTAGTTGCGCTTTTCACTGATCACCAGTGGGTGGCGCCGGCGGTGGCCACAGCAGACCTCCATGCCCAGTACGGATCGCCAACATATTTCTACTCCTTCTACCACCACTGTCAGAGTGACGCGTCGCCCGCCTGGGCTGACTCCGCTCATGGAGATGAGGTGCCGTATGTGTTCGGTCTGCCGCTGATCGGCCCCACGGACCTCTTCAACTGTAACTTTTCTAAGAACGATGTGATGCTCAGCGCCGTGGTCATGACATACTGGACCAACTTCGCCAAGACAGGAGATCCTAACCAGCCGGTGCCCCAGGACACCAAGTTCATCCACACCAAACCCAACCGTTTTGAGGAGGTGGCCTGGGCCAAGTACACCCCCAAGGAACAGCTGTACCTGCACATCGGCCTGAAGCCACGCGTCAGAGACCACTACAGAGCCGCCAAGACAGCTTTCTGGCTACAGCTGGTGCCCCACCTCCACAACATCAACGAGTTGCTGCAGTATGTGTCCTCTGCAACCCACAGCCCTCCCCAGGACACCACCCCCCACTCCTACACCAAGCGGCTGTCTAAAGGCCTGGGCTTGGGTAGCACGCgccaccccaaccccaacccccctGCCACGCCCCAGGCTCCAGCACTGCAGGGGGAGGAGCTGCAGGTCCCCCACCCCGTCATGGAGGACTACTCCACTGAGCTGAGTGTTACCATCGCAGTGGGAGCCTCACTCCTTTTCCTCAACATCCTGGCCTTTGCAGCTCTGCTCTACAAGAAGGACAAACGCAAGATGGAACACCGGAGGCTGCCACGCCCACCTCCACGCCGTGACATCATGAACGCTGACATCACACACCAACTGCAGGGGGAGGGACTTCTGAAGCAGCTGGAGGCTGAGGCTCTGCACCAACACAACACGCTGGAGATACacgacacacacaacatacaccacacactggaggctctggacacGCTGGACACACAGGACATCTACAACACTCTGGACACCCTGCGACTGACCTGTCCACCTGACTACACCCTGACCCTGAGACGCTCCCCTGACGACGTGCCCCTGATGACCCCCAGGTCCCTGCCCATGACCCCTGGCTCTCACCCTGCCACCCCCATGACCCCTGGATCTGTTGTGGGGGTACAGCCCATGCAGGGCTATAGTCCTTACAGTAACACTCACCTGccccatacacacacgcacacacaccccagcacacacacacattctaccaCACGTGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU321848 lncRNA upstream 18060 62598750 ~ 62605356 (+) True LOC110504388
TU321833 lncRNA upstream 44289 62578455 ~ 62579127 (+) True G283800
TU321835 lncRNA upstream 45732 62576483 ~ 62577684 (+) True G283802
TU321806 lncRNA upstream 104994 62516801 ~ 62518422 (+) True G283779
TU321739 lncRNA upstream 192481 62425693 ~ 62430935 (+) True LOC110520349
TU321851 lncRNA downstream 2535 62649487 ~ 62650344 (+) True G283817
TU321867 lncRNA downstream 7978 62654930 ~ 62655154 (+) True G283833
TU321871 lncRNA downstream 16428 62663380 ~ 62663709 (+) True G283836
TU321875 lncRNA downstream 23259 62670211 ~ 62670488 (+) True G283840
TU321896 lncRNA downstream 66191 62713143 ~ 62713848 (+) True G283860
XM_036974877.1 mRNA upstream 10941 62598678 ~ 62612475 (+) False LOC110504388
XR_005051351.1 mRNA downstream 51935 62698887 ~ 62701213 (+) True LOC118964306
XM_036965040.1 mRNA downstream 58499 62705451 ~ 62712740 (+) False LOC110504398
XM_021597616.2 mRNA downstream 136294 62783246 ~ 62813081 (+) False LOC110520355
XR_005051352.1 mRNA downstream 211261 62858213 ~ 62860498 (+) True LOC118964307
XM_036974891.1 mRNA downstream 300366 62947318 ~ 63007919 (+) False LOC110520359
TU320883 other upstream 214559 62367614 ~ 62408857 (+) True LOC110520346
TU320785 other upstream 426465 62193604 ~ 62196951 (+) True LOC110520339
TU320641 other upstream 661941 61957388 ~ 61961475 (+) True G282707
TU319833 other upstream 1586311 61033766 ~ 61037105 (+) True G281996
TU319500 other upstream 1729638 60891524 ~ 60893778 (+) True G281714
TU321897 other downstream 59379 62706331 ~ 62706970 (+) True LOC110504398
TU322433 other downstream 369374 63016326 ~ 63022591 (+) True G284313
TU322474 other downstream 478938 63125890 ~ 63128958 (+) True LOC110520364
TU322683 other downstream 620167 63267119 ~ 63312394 (+) False G284537
TU322754 other downstream 743979 63390931 ~ 63391284 (+) True G284599

Expression Profile